>GCM1_RAT (Q9Z288) Chorion-specific transcription factor GCMa (Glial cells|
           missing homolog 1) (GCM motif protein 1)
          Length = 436

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 25/106 (23%), Positives = 44/106 (41%)
 Frame = +2

Query: 2   MDXVSWILVQAKLSKKQRPDYRDT*YKLPAQGSVDFLYSSLIYQNSEEITTEMSSRQCVQ 181
           M  V      + L  K RP+ +    ++P+QGS+   +S   +Q   ++ +  S+     
Sbjct: 169 MKKVHMASASSSLRMKGRPEMKGLPGEIPSQGSLPLTWS---FQEGVQLPSGYSTPLIAN 225

Query: 182 FMDKGNKNAKQNVFTTSLIFPSSFAMTKQTETRPP**QLDILKMFK 319
                    +QN     L FP S+ +   TE   P   LD  K+++
Sbjct: 226 A-------PQQNSLNDCLSFPKSYDLGGTTELEDPTSTLDPTKLYE 264


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,712,756
Number of Sequences: 219361
Number of extensions: 1595006
Number of successful extensions: 4013
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4010
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)