Clone Name | rbah61j02 |
---|---|
Clone Library Name | barley_pub |
>emb|X89006.1|SHRNAF16B Saccharum hybrid cultivar H65-7052 mRNA for cytosolic fructose-1,6-bisphosphatase Length = 1318 Score = 176 bits (89), Expect = 5e-41 Identities = 173/201 (86%) Strand = Plus / Minus Query: 367 ttgatctcctccacgtcgtcgctgctgccgaggaatatcggggatctctcgtggatgtcg 426 ||||| |||||||| |||||| ||||||||||||||||||||||||||||||||| | | Sbjct: 1062 ttgatttcctccacatcgtcgtagctgccgaggaatatcggggatctctcgtggatcttg 1003 Query: 427 gtggggatcagatcgagcgaccgtcctttgcctgtgaaagactggcctccagcttcctcc 486 || |||| |||||| || | |||| ||||||||||||| ||||| |||||||| | |||| Sbjct: 1002 gttgggaccagatcaagagcccgttctttgcctgtgaaggactgacctccagcctgctcc 943 Query: 487 atcaggaatgacatggggaacacctcatacatcacacggagctttccgttcgggctcttc 546 || ||||||||||||||||| || ||||| | |||||||||||||| || ||||||||| Sbjct: 942 attaggaatgacatggggaaaacttcataaaggacacggagctttccatttgggctcttc 883 Query: 547 ttgtctgcggggtacagaaat 567 | ||| || ||||||| |||| Sbjct: 882 tggtcagcagggtacaaaaat 862
>gb|AF218845.1|AF218845 Porteresia coarctata fructose-1,6-bisphosphatase mRNA, complete cds Length = 1035 Score = 161 bits (81), Expect = 3e-36 Identities = 171/201 (85%) Strand = Plus / Minus Query: 367 ttgatctcctccacgtcgtcgctgctgccgaggaatatcggggatctctcgtggatgtcg 426 |||||||||||||| || ||| ||| ||||| ||||| ||||||||||| || || | | Sbjct: 992 ttgatctcctccacatcttcgaagcttccgagaaatattggggatctctcatgaatcttg 933 Query: 427 gtggggatcagatcgagcgaccgtcctttgcctgtgaaagactggcctccagcttcctcc 486 || || | || || || | |||| |||||||||||||||||||||||||||| | |||| Sbjct: 932 gtaggaacgaggtcaagagcccgttctttgcctgtgaaagactggcctccagcctgctcc 873 Query: 487 atcaggaatgacatggggaacacctcatacatcacacggagctttccgttcgggctcttc 546 |||||||||||||||||||| || ||||||| |||||||| ||||| |||||||||||| Sbjct: 872 atcaggaatgacatggggaaaacttcatacagaacacggagttttccattcgggctcttc 813 Query: 547 ttgtctgcggggtacagaaat 567 |||||||| ||||||| |||| Sbjct: 812 ttgtctgcagggtacaaaaat 792
>ref|NM_190752.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1110 Score = 153 bits (77), Expect = 7e-34 Identities = 170/201 (84%) Strand = Plus / Minus Query: 367 ttgatctcctccacgtcgtcgctgctgccgaggaatatcggggatctctcgtggatgtcg 426 |||||||||||||| || ||| ||| || || ||||| |||||||||||||| || | | Sbjct: 1052 ttgatctcctccacatcttcgaagcttccaagaaatattggggatctctcgtgaatcttg 993 Query: 427 gtggggatcagatcgagcgaccgtcctttgcctgtgaaagactggcctccagcttcctcc 486 || || | || || || | |||| |||||||||||||||||||||||||||| | |||| Sbjct: 992 gtaggaacgaggtcaagagcccgttctttgcctgtgaaagactggcctccagcctgctcc 933 Query: 487 atcaggaatgacatggggaacacctcatacatcacacggagctttccgttcgggctcttc 546 |||||||||||||||||||| || ||||||| |||||||| ||||| || ||||||||| Sbjct: 932 atcaggaatgacatggggaaaacttcatacagaacacggagttttccatttgggctcttc 873 Query: 547 ttgtctgcggggtacagaaat 567 |||||||| ||||||| |||| Sbjct: 872 ttgtctgcagggtacaaaaat 852
>dbj|AK119536.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-B07, full insert sequence Length = 1315 Score = 153 bits (77), Expect = 7e-34 Identities = 170/201 (84%) Strand = Plus / Minus Query: 367 ttgatctcctccacgtcgtcgctgctgccgaggaatatcggggatctctcgtggatgtcg 426 |||||||||||||| || ||| ||| || || ||||| |||||||||||||| || | | Sbjct: 1095 ttgatctcctccacatcttcgaagcttccaagaaatattggggatctctcgtgaatcttg 1036 Query: 427 gtggggatcagatcgagcgaccgtcctttgcctgtgaaagactggcctccagcttcctcc 486 || || | || || || | |||| |||||||||||||||||||||||||||| | |||| Sbjct: 1035 gtaggaacgaggtcaagagcccgttctttgcctgtgaaagactggcctccagcctgctcc 976 Query: 487 atcaggaatgacatggggaacacctcatacatcacacggagctttccgttcgggctcttc 546 |||||||||||||||||||| || ||||||| |||||||| ||||| || ||||||||| Sbjct: 975 atcaggaatgacatggggaaaacttcatacagaacacggagttttccatttgggctcttc 916 Query: 547 ttgtctgcggggtacagaaat 567 |||||||| ||||||| |||| Sbjct: 915 ttgtctgcagggtacaaaaat 895
>dbj|AK070516.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023057C24, full insert sequence Length = 1376 Score = 153 bits (77), Expect = 7e-34 Identities = 170/201 (84%) Strand = Plus / Minus Query: 367 ttgatctcctccacgtcgtcgctgctgccgaggaatatcggggatctctcgtggatgtcg 426 |||||||||||||| || ||| ||| || || ||||| |||||||||||||| || | | Sbjct: 1103 ttgatctcctccacatcttcgaagcttccaagaaatattggggatctctcgtgaatcttg 1044 Query: 427 gtggggatcagatcgagcgaccgtcctttgcctgtgaaagactggcctccagcttcctcc 486 || || | || || || | |||| |||||||||||||||||||||||||||| | |||| Sbjct: 1043 gtaggaacgaggtcaagagcccgttctttgcctgtgaaagactggcctccagcctgctcc 984 Query: 487 atcaggaatgacatggggaacacctcatacatcacacggagctttccgttcgggctcttc 546 |||||||||||||||||||| || ||||||| |||||||| ||||| || ||||||||| Sbjct: 983 atcaggaatgacatggggaaaacttcatacagaacacggagttttccatttgggctcttc 924 Query: 547 ttgtctgcggggtacagaaat 567 |||||||| ||||||| |||| Sbjct: 923 ttgtctgcagggtacaaaaat 903
>dbj|AB007193.1| Oryza sativa mRNA for fructose-1,6-bisphosphatase (cytosolic isoform), complete cds Length = 1544 Score = 153 bits (77), Expect = 7e-34 Identities = 170/201 (84%) Strand = Plus / Minus Query: 367 ttgatctcctccacgtcgtcgctgctgccgaggaatatcggggatctctcgtggatgtcg 426 |||||||||||||| || ||| ||| || || ||||| |||||||||||||| || | | Sbjct: 1072 ttgatctcctccacatcttcgaagcttccaagaaatattggggatctctcgtgaatcttg 1013 Query: 427 gtggggatcagatcgagcgaccgtcctttgcctgtgaaagactggcctccagcttcctcc 486 || || | || || || | |||| |||||||||||||||||||||||||||| | |||| Sbjct: 1012 gtaggaacgaggtcaagagcccgttctttgcctgtgaaagactggcctccagcctgctcc 953 Query: 487 atcaggaatgacatggggaacacctcatacatcacacggagctttccgttcgggctcttc 546 |||||||||||||||||||| || ||||||| |||||||| ||||| || ||||||||| Sbjct: 952 atcaggaatgacatggggaaaacttcatacagaacacggagttttccatttgggctcttc 893 Query: 547 ttgtctgcggggtacagaaat 567 |||||||| ||||||| |||| Sbjct: 892 ttgtctgcagggtacaaaaat 872
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 101 bits (51), Expect = 2e-18 Identities = 66/71 (92%) Strand = Plus / Minus Query: 447 ccgtcctttgcctgtgaaagactggcctccagcttcctccatcaggaatgacatggggaa 506 |||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct: 37515202 ccgttctttgcctgtgaaagactggcctccagcctgctccatcaggaatgacatggggaa 37515143 Query: 507 cacctcataca 517 || ||||||| Sbjct: 37515142 aacttcataca 37515132 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 523 cggagctttccgttcgggctcttcttgtctgcggggtacagaaat 567 ||||| ||||| || ||||||||||||||||| ||||||| |||| Sbjct: 37515027 cggagttttccatttgggctcttcttgtctgcagggtacaaaaat 37514983 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Minus Query: 367 ttgatctcctccacgtcgtcgctgctgccgaggaatatcggggatctctcgtg 419 |||||||||||||| || ||| ||| || || ||||| |||||||||||||| Sbjct: 37515400 ttgatctcctccacatcttcgaagcttccaagaaatattggggatctctcgtg 37515348
>dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0505D12 Length = 146951 Score = 101 bits (51), Expect = 2e-18 Identities = 66/71 (92%) Strand = Plus / Minus Query: 447 ccgtcctttgcctgtgaaagactggcctccagcttcctccatcaggaatgacatggggaa 506 |||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct: 109739 ccgttctttgcctgtgaaagactggcctccagcctgctccatcaggaatgacatggggaa 109680 Query: 507 cacctcataca 517 || ||||||| Sbjct: 109679 aacttcataca 109669 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 523 cggagctttccgttcgggctcttcttgtctgcggggtacagaaat 567 ||||| ||||| || ||||||||||||||||| ||||||| |||| Sbjct: 109564 cggagttttccatttgggctcttcttgtctgcagggtacaaaaat 109520 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Minus Query: 367 ttgatctcctccacgtcgtcgctgctgccgaggaatatcggggatctctcgtg 419 |||||||||||||| || ||| ||| || || ||||| |||||||||||||| Sbjct: 109937 ttgatctcctccacatcttcgaagcttccaagaaatattggggatctctcgtg 109885
>gb|AF378183.1|AF378183 Oryza sativa cultivar Milyang23 cytosolic fructose-1 mRNA, partial cds Length = 504 Score = 87.7 bits (44), Expect = 4e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 484 tccatcaggaatgacatggggaacacctcatacatcacacggagctttccgttcgggctc 543 ||||| ||||||||||||||||| || ||||||| |||||||| ||||| || |||||| Sbjct: 500 tccattaggaatgacatggggaaaacttcatacagaacacggagttttccatttgggctc 441 Query: 544 ttcttgtctgcggggtacagaaat 567 ||||||||||| ||||||| |||| Sbjct: 440 ttcttgtctgcagggtacaaaaat 417
>ref|XM_475314.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1032 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Minus Query: 453 tttgcctgtgaaagactggcctccagcttcctccatcaggaatgacatggggaacacctc 512 |||||||||||||| || |||||||||| |||||||| ||||||||| |||||||| || Sbjct: 912 tttgcctgtgaaagcttgtcctccagcttgctccatcaagaatgacattgggaacacttc 853 Query: 513 atacatcacacggagctttccgttcgggctcttct 547 |||| ||||| || |||||||| |||||||||| Sbjct: 852 gtacagaacacgaagttttccgtttgggctcttct 818
>gb|AC134930.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0042J17, complete sequence Length = 124139 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 453 tttgcctgtgaaagactggcctccagcttcctccatcaggaatgacatggggaacac 509 |||||||||||||| || |||||||||| |||||||| ||||||||| |||||||| Sbjct: 67591 tttgcctgtgaaagcttgtcctccagcttgctccatcaagaatgacattgggaacac 67647
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 453 tttgcctgtgaaagactggcctccagcttcctccatcaggaatgacatggggaacac 509 |||||||||||||| || |||||||||| |||||||| ||||||||| |||||||| Sbjct: 21350269 tttgcctgtgaaagcttgtcctccagcttgctccatcaagaatgacattgggaacac 21350325
>gb|BC012927.1| Homo sapiens fructose-1,6-bisphosphatase 1, mRNA (cDNA clone MGC:21278 IMAGE:4517633), complete cds Length = 1513 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 526 agctttccgttcgggctcttcttgtctgcggggtacagaaat 567 |||||||| || ||||||||||||| ||||||||||||||| Sbjct: 1024 agctttccattggggctcttcttgttagcggggtacagaaat 983
>ref|NM_000507.2| Homo sapiens fructose-1,6-bisphosphatase 1 (FBP1), mRNA Length = 1527 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 526 agctttccgttcgggctcttcttgtctgcggggtacagaaat 567 |||||||| || ||||||||||||| ||||||||||||||| Sbjct: 1038 agctttccattggggctcttcttgttagcggggtacagaaat 997
>dbj|AK223395.1| Homo sapiens mRNA for fructose-1,6-bisphosphatase 1 variant, clone: FCC107D09 Length = 1557 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 526 agctttccgttcgggctcttcttgtctgcggggtacagaaat 567 |||||||| || ||||||||||||| ||||||||||||||| Sbjct: 1102 agctttccattggggctcttcttgttagcggggtacagaaat 1061
>gb|AF073475.1|AF073475 Homo sapiens fructose-1,6-bisphosphatase (FBP1) mRNA, partial cds Length = 1011 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 526 agctttccgttcgggctcttcttgtctgcggggtacagaaat 567 |||||||| || ||||||||||||| ||||||||||||||| Sbjct: 824 agctttccattggggctcttcttgttagcggggtacagaaat 783
>dbj|D26054.1|HUMF16B1 Homo sapiens mRNA for fructose-1,6-bisphosphatase, complete cds Length = 1051 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 526 agctttccgttcgggctcttcttgtctgcggggtacagaaat 567 |||||||| || ||||||||||||| ||||||||||||||| Sbjct: 833 agctttccattggggctcttcttgttagcggggtacagaaat 792
>gb|AY544122.1| Homo sapiens growth-inhibiting protein 17 mRNA, complete cds Length = 1145 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 526 agctttccgttcgggctcttcttgtctgcggggtacagaaat 567 |||||||| || ||||||||||||| ||||||||||||||| Sbjct: 914 agctttccattggggctcttcttgttagcggggtacagaaat 873
>gb|L10320.1|HUMF16BPA Human fructose-1,6-bisphosphatase homotetramer gene, complete cds Length = 1401 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 526 agctttccgttcgggctcttcttgtctgcggggtacagaaat 567 |||||||| || ||||||||||||| ||||||||||||||| Sbjct: 969 agctttccattggggctcttcttgttagcggggtacagaaat 928
>gb|M19922.1|HUMALD Human fructose 1,6-bisphosphatase mRNA, complete cds Length = 1382 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 526 agctttccgttcgggctcttcttgtctgcggggtacagaaat 567 |||||||| || ||||||||||||| ||||||||||||||| Sbjct: 1025 agctttccattggggctcttcttgttagcggggtacagaaat 984
>dbj|D26056.1|HUMF16B3 Human mRNA for fructose-1,6-bisphosphatase, complete cds Length = 1051 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 526 agctttccgttcgggctcttcttgtctgcggggtacagaaat 567 |||||||| || ||||||||||||| ||||||||||||||| Sbjct: 833 agctttccattggggctcttcttgttagcggggtacagaaat 792
>dbj|D26055.1|HUMF16B2 Human mRNA for fructose-1,6-bisphosphatase, complete cds Length = 1051 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 526 agctttccgttcgggctcttcttgtctgcggggtacagaaat 567 |||||||| || ||||||||||||| ||||||||||||||| Sbjct: 833 agctttccattggggctcttcttgttagcggggtacagaaat 792
>ref|XM_520717.1| PREDICTED: Pan troglodytes similar to Fructose-1,6-bisphosphatase (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) (LOC465260), mRNA Length = 2142 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Minus Query: 527 gctttccgttcgggctcttcttgtctgcggggtacagaaat 567 ||||||| || ||||||||||||| ||||||||||||||| Sbjct: 1830 gctttccattggggctcttcttgttagcggggtacagaaat 1790
>emb|AJ243392.1|PSA243392 Pisum sativum mRNA for cytosolic fructose-1,6-bisphosphatase Length = 990 Score = 50.1 bits (25), Expect = 0.008 Identities = 88/109 (80%) Strand = Plus / Minus Query: 454 ttgcctgtgaaagactggcctccagcttcctccatcaggaatgacatggggaacacctca 513 ||||| ||||||||||| ||||| || | ||||||| ||| ||||| ||||| || ||| Sbjct: 869 ttgccggtgaaagactgtcctccggcctgttccatcaagaaggacattgggaagacttca 810 Query: 514 tacatcacacggagctttccgttcgggctcttcttgtctgcggggtaca 562 |||| ||||| || ||||| || || ||||| ||||| || ||||||| Sbjct: 809 tacaatacacgaagttttccatttggactctttttgtcagcagggtaca 761
>gb|AY866483.1| Homo sapiens fructose-1,6-bisphosphatase 1 (FBP1) gene, complete cds Length = 40644 Score = 48.1 bits (24), Expect = 0.032 Identities = 36/40 (90%) Strand = Plus / Minus Query: 528 ctttccgttcgggctcttcttgtctgcggggtacagaaat 567 |||||| || ||||||||||||| ||||||||||||||| Sbjct: 36326 ctttccattggggctcttcttgttagcggggtacagaaat 36287
>emb|AL161728.25| Human DNA sequence from clone RP11-342C23 on chromosome 9 Contains the FBP1 gene for Fructose-1,6-bisphosphatase 1, a novel gene, the FBP2 gene for Fructose-1,6-bisphosphatase 2, a gene for a putative novel protein and one CpG island, complete sequence Length = 170532 Score = 48.1 bits (24), Expect = 0.032 Identities = 36/40 (90%) Strand = Plus / Minus Query: 528 ctttccgttcgggctcttcttgtctgcggggtacagaaat 567 |||||| || ||||||||||||| ||||||||||||||| Sbjct: 85908 ctttccattggggctcttcttgttagcggggtacagaaat 85869
>gb|U21930.1|HSLFBPS6 Human fructose-1,6-biphosphatase (FBP1) gene, exon 6 Length = 1314 Score = 48.1 bits (24), Expect = 0.032 Identities = 36/40 (90%) Strand = Plus / Minus Query: 528 ctttccgttcgggctcttcttgtctgcggggtacagaaat 567 |||||| || ||||||||||||| ||||||||||||||| Sbjct: 1014 ctttccattggggctcttcttgttagcggggtacagaaat 975
>ref|XM_389456.1| Gibberella zeae PH-1 chromosome 4 conserved hypothetical protein (FG09280.1) partial mRNA Length = 1029 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Minus Query: 522 acggagctttccgttcgggctcttcttgtctgcggggta 560 ||||||||| || || |||||||||||||| |||||||| Sbjct: 855 acggagcttgcccttggggctcttcttgtcggcggggta 817
>gb|M80597.1|BEUF16BPP Beta vulgaris cytosolic fructose-1,6-bisphosphatase mRNA, complete cds Length = 1278 Score = 46.1 bits (23), Expect = 0.12 Identities = 59/71 (83%) Strand = Plus / Minus Query: 478 gcttcctccatcaggaatgacatggggaacacctcatacatcacacggagctttccgttc 537 |||| |||||| | |||||||||||| || |||||||| | || || || |||||||| Sbjct: 922 gcttgctccattaagaatgacatgggaaagacctcataaagaactcgtagttttccgtta 863 Query: 538 gggctcttctt 548 ||||||||||| Sbjct: 862 gggctcttctt 852
>gb|AF317553.1|AF317553 Beta vulgaris cytosolic fructose-1,6-bisphosphatase mRNA, complete cds Length = 1279 Score = 46.1 bits (23), Expect = 0.12 Identities = 59/71 (83%) Strand = Plus / Minus Query: 478 gcttcctccatcaggaatgacatggggaacacctcatacatcacacggagctttccgttc 537 |||| |||||| | |||||||||||| || |||||||| | || || || |||||||| Sbjct: 923 gcttgctccattaagaatgacatgggaaagacctcataaagaactcgtagttttccgtta 864 Query: 538 gggctcttctt 548 ||||||||||| Sbjct: 863 gggctcttctt 853
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 353 ccgcgtacagcgccttgatctcctcca 379 |||||| |||||||||||||||||||| Sbjct: 4131116 ccgcgtgcagcgccttgatctcctcca 4131090
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 73 tcaacgatgcacacagccattc 94 |||||||||||||||||||||| Sbjct: 457857 tcaacgatgcacacagccattc 457878
>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome Length = 2519802 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 73 tcaacgatgcacacagccattc 94 |||||||||||||||||||||| Sbjct: 1890243 tcaacgatgcacacagccattc 1890222
>gb|AC159879.2| Mus musculus BAC clone RP24-497H22 from chromosome 12, complete sequence Length = 201836 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 105 tacatgtatacatggatgtatattt 129 |||||||||||||| |||||||||| Sbjct: 193654 tacatgtatacatgcatgtatattt 193630
>emb|AL844607.4| Mouse DNA sequence from clone RP24-280G18 on chromosome 4, complete sequence Length = 160298 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 229 tagaaaagaaatgcctgatat 249 ||||||||||||||||||||| Sbjct: 80636 tagaaaagaaatgcctgatat 80616
>gb|AC159242.2| Mus musculus BAC clone RP24-325A23 from chromosome 13, complete sequence Length = 193570 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 attacactgaatgacacagac 225 ||||||||||||||||||||| Sbjct: 94912 attacactgaatgacacagac 94892
>gb|AC158354.2| Mus musculus BAC clone RP24-160P23 from chromosome 12, complete sequence Length = 178034 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 105 tacatgtatacatggatgtatattt 129 |||||||||||||| |||||||||| Sbjct: 140013 tacatgtatacatgcatgtatattt 140037
>emb|BX247907.8| Zebrafish DNA sequence from clone CH211-232D19 in linkage group 8, complete sequence Length = 169530 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 105 tacatgtatacatggatgtat 125 ||||||||||||||||||||| Sbjct: 75306 tacatgtatacatggatgtat 75326
>emb|AL139021.6|CNS01DX3 Human chromosome 14 DNA sequence BAC R-517O13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 176343 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 ctgatatatgaatcacatttg 263 ||||||||||||||||||||| Sbjct: 162800 ctgatatatgaatcacatttg 162780
>emb|AL135752.6|CNS01DVG Human chromosome 14 DNA sequence BAC R-401H9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 171754 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 ctgatatatgaatcacatttg 263 ||||||||||||||||||||| Sbjct: 110976 ctgatatatgaatcacatttg 110996
>gb|AC121870.2| Mus musculus chromosome 9 clone RP24-121D5, complete sequence Length = 191747 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 atacatgtatacatggatgt 123 |||||||||||||||||||| Sbjct: 90680 atacatgtatacatggatgt 90661
>ref|NM_184786.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1632 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gcgccttgatctcctccacg 381 |||||||||||||||||||| Sbjct: 967 gcgccttgatctcctccacg 948
>ref|XM_324153.1| Neurospora crassa OR74A hypothetical protein (NCU04797.1) partial mRNA Length = 1053 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 538 gggctcttcttgtctgcggggtac 561 ||||||||||||||||| |||||| Sbjct: 857 gggctcttcttgtctgccgggtac 834
>ref|XM_955330.1| Neurospora crassa OR74A hypothetical protein (NCU04797.1) partial mRNA Length = 1053 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 538 gggctcttcttgtctgcggggtac 561 ||||||||||||||||| |||||| Sbjct: 857 gggctcttcttgtctgccgggtac 834
>ref|NG_001336.2| Homo sapiens T cell receptor gamma locus (TRG@) on chromosome 7 Length = 140728 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 tggcctccagcttcctccat 488 |||||||||||||||||||| Sbjct: 53151 tggcctccagcttcctccat 53132
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 gcgccttgatctcctccacg 381 |||||||||||||||||||| Sbjct: 20477264 gcgccttgatctcctccacg 20477283
>gb|AC006033.2| Homo sapiens BAC clone RP11-121A8 from 7, complete sequence Length = 171816 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 tggcctccagcttcctccat 488 |||||||||||||||||||| Sbjct: 141696 tggcctccagcttcctccat 141715
>gb|AC005158.3| Homo sapiens BAC clone GS1-250N6 from 7, complete sequence Length = 266344 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 455 tgcctgtgaaagactggcctccag 478 |||||||||||| ||||||||||| Sbjct: 75856 tgcctgtgaaagcctggcctccag 75879
>gb|AC112791.3| Mus musculus BAC clone RP23-182O1 from 13, complete sequence Length = 208443 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 atacatgtatacatggatgtatat 127 ||||||||||| |||||||||||| Sbjct: 132294 atacatgtataaatggatgtatat 132317
>emb|AL732479.6| Human DNA sequence from clone RP11-351D13 on chromosome 10, complete sequence Length = 97781 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 atacatgtatacatggatgtatat 127 ||||||||||||||| |||||||| Sbjct: 36657 atacatgtatacatgtatgtatat 36634
>emb|AL357037.13| Human DNA sequence from clone RP11-383B24 on chromosome 10 Contains the 3' end of a 44kDA polymerase (RNA) III (DNA directed) polypeptide D (POLR3D) pseudogene, the 3' end of the ADK gene for adenosine kinase and a novel pseudogene, complete sequence Length = 165773 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 atacatgtatacatggatgtatat 127 |||||||||||||| ||||||||| Sbjct: 107604 atacatgtatacatagatgtatat 107581
>emb|AL136160.18| Human DNA sequence from clone RP11-16L6 on chromosome 13q12.3-13.3 Contains part of a novel gene, a glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene and a novel pseudogene, complete sequence Length = 155430 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 tggcctccagcttcctccat 488 |||||||||||||||||||| Sbjct: 135969 tggcctccagcttcctccat 135988
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ccacgtcgtcgctgctgccg 396 |||||||||||||||||||| Sbjct: 146509 ccacgtcgtcgctgctgccg 146490
>gb|AC092124.2| Homo sapiens chromosome 16 clone RP11-1079H2, complete sequence Length = 197992 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 ggcctccagcttcctccatc 489 |||||||||||||||||||| Sbjct: 161028 ggcctccagcttcctccatc 161047
>gb|AC068870.17| Homo sapiens chromosome , clone RP11-775C24, complete sequence Length = 194237 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 tggcctccagcttcctccat 488 |||||||||||||||||||| Sbjct: 92959 tggcctccagcttcctccat 92978
>gb|AC100795.2| Homo sapiens chromosome 18, clone RP11-956K8, complete sequence Length = 193569 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 atttgtatgtatatgcaatg 32 |||||||||||||||||||| Sbjct: 177707 atttgtatgtatatgcaatg 177726
>gb|AE009824.1|AE009824 Pyrobaculum aerophilum strain IM2 section 79 of 201 of the complete genome Length = 10029 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gcgccttgatctcctccacg 381 |||||||||||||||||||| Sbjct: 5499 gcgccttgatctcctccacg 5480
>ref|XM_694107.1| PREDICTED: Danio rerio similar to WD and tetratricopeptide repeats 1 (LOC570606), mRNA Length = 2590 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 atacatgtatacatggatgt 123 |||||||||||||||||||| Sbjct: 2431 atacatgtatacatggatgt 2412
>gb|AF159056.1|AF159056 Homo sapiens T-cell gamma receptor locus, complete sequence Length = 140691 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 tggcctccagcttcctccat 488 |||||||||||||||||||| Sbjct: 53143 tggcctccagcttcctccat 53124
>gb|AC160639.2| Mus musculus BAC clone RP23-103I12 from chromosome 14, complete sequence Length = 195224 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tgtatgtatatgcaatgcat 35 |||||||||||||||||||| Sbjct: 145278 tgtatgtatatgcaatgcat 145259
>gb|AC154332.2| Mus musculus BAC clone RP23-259P17 from chromosome 14, complete sequence Length = 208155 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 caggaatgacatggggaaca 508 |||||||||||||||||||| Sbjct: 62112 caggaatgacatggggaaca 62093
>gb|AC023263.4|AC023263 Homo sapiens, clone RP11-590E14, complete sequence Length = 174176 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 atttgtatgtatatgcaatg 32 |||||||||||||||||||| Sbjct: 25200 atttgtatgtatatgcaatg 25219
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 gcgccttgatctcctccacg 381 |||||||||||||||||||| Sbjct: 20470293 gcgccttgatctcctccacg 20470312
>gb|AC108867.3| Homo sapiens BAC clone RP11-102H15 from 4, complete sequence Length = 132858 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 tggcctccagcttcctccat 488 |||||||||||||||||||| Sbjct: 26304 tggcctccagcttcctccat 26285
>gb|AC146165.2| Pan troglodytes BAC clone RP43-36N14 from chromosome 7, complete sequence Length = 159324 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 455 tgcctgtgaaagactggcctccag 478 |||||||||||| ||||||||||| Sbjct: 18901 tgcctgtgaaagcctggcctccag 18924
>gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B24 genomic sequence, complete sequence Length = 152883 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 gcgccttgatctcctccacg 381 |||||||||||||||||||| Sbjct: 121564 gcgccttgatctcctccacg 121583
>gb|AC016593.5|AC016593 Homo sapiens chromosome 5 clone CTD-2005H4, complete sequence Length = 124211 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 tggcctccagcttcctccat 488 |||||||||||||||||||| Sbjct: 4632 tggcctccagcttcctccat 4613
>gb|AC134575.3| Mus musculus BAC clone RP24-67I21 from chromosome 14, complete sequence Length = 172103 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tgtatgtatatgcaatgcat 35 |||||||||||||||||||| Sbjct: 19989 tgtatgtatatgcaatgcat 19970
>emb|BX510300.12| Mouse DNA sequence from clone RP23-221A16 on chromosome 4, complete sequence Length = 128614 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 caatgcattctgcacagctc 47 |||||||||||||||||||| Sbjct: 65843 caatgcattctgcacagctc 65824
>dbj|AK119569.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-A08, full insert sequence Length = 1844 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gcgccttgatctcctccacg 381 |||||||||||||||||||| Sbjct: 1023 gcgccttgatctcctccacg 1004
>gb|AF165175.2|AF165175 Homo sapiens PAC P704-39J11 chromosome 21 map 21q21, complete sequence Length = 92070 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 tggcctccagcttcctccat 488 |||||||||||||||||||| Sbjct: 73150 tggcctccagcttcctccat 73131
>gb|AY104220.1| Zea mays PCO073762 mRNA sequence Length = 1416 Score = 40.1 bits (20), Expect = 7.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 523 cggagctttccgttcgggctcttcttgtctgcggggtaca 562 |||||||||||||| ||| |||||| ||| || ||||||| Sbjct: 1370 cggagctttccgtttgggttcttctcgtcagcagggtaca 1331
>dbj|AP001671.1| Homo sapiens genomic DNA, chromosome 21q, section 15/105 Length = 340000 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 tggcctccagcttcctccat 488 |||||||||||||||||||| Sbjct: 265934 tggcctccagcttcctccat 265915
>gb|AC142450.3| Mus musculus BAC clone RP24-425G6 from 8, complete sequence Length = 153108 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tatgtatatgcaatgcattc 37 |||||||||||||||||||| Sbjct: 136989 tatgtatatgcaatgcattc 137008
>gb|AC135120.4| Mus musculus BAC clone RP24-536H22 from 8, complete sequence Length = 153982 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 tatgtatatgcaatgcattc 37 |||||||||||||||||||| Sbjct: 94709 tatgtatatgcaatgcattc 94690
>gb|AF057177.1|AF057177 Homo sapiens T-cell receptor gamma V1 gene region Length = 53221 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 tggcctccagcttcctccat 488 |||||||||||||||||||| Sbjct: 53143 tggcctccagcttcctccat 53124
>emb|AL672174.8| Mouse DNA sequence from clone RP23-408K4 on chromosome X, complete sequence Length = 201642 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 catgtatacatggatgtata 126 |||||||||||||||||||| Sbjct: 115343 catgtatacatggatgtata 115324
>emb|AL670544.7| Mouse DNA sequence from clone RP23-16G8 on chromosome X, complete sequence Length = 236946 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 atatgaatcacatttgccag 267 |||||||||||||||||||| Sbjct: 220967 atatgaatcacatttgccag 220986 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,024,038 Number of Sequences: 3902068 Number of extensions: 5024038 Number of successful extensions: 110494 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110110 Number of HSP's gapped (non-prelim): 384 length of query: 567 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 544 effective length of database: 17,143,297,704 effective search space: 9325953950976 effective search space used: 9325953950976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)