Clone Name | rbah61i24 |
---|---|
Clone Library Name | barley_pub |
>SOXA_RHOSG (P54995) Dibenzothiophene desulfurization enzyme A| Length = 453 Score = 33.1 bits (74), Expect = 0.63 Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 5/119 (4%) Frame = -1 Query: 580 LEAAVAGQLLLNEHWIQDLPYDRTGELESLVSFVKNNLDLCKWAAVATVATQAFSLFLAM 401 L A A +N+H D YDR E V + N+ W A V +A +F Sbjct: 140 LNDAEARNFGINQHLEHDARYDRADEFLEAVKKLWNS-----WDEDALVLDKAAGVF--- 191 Query: 400 TLRAMVSPANADY-DSEEDFVVIRRPLLL---AQGAPAYIPTTADPRGAQ-PGLWSSSM 239 PA Y D +++ +R PL + QG P + PRG + G W+ ++ Sbjct: 192 -----ADPAKVHYVDHHGEWLNVRGPLQVPRSPQGEPVILQAGLSPRGRRFAGKWAEAV 245
>ARD1_RAT (P36407) GTP-binding protein ARD-1 (ADP-ribosylation factor domain| protein 1) (Tripartite motif protein 23) (Fragment) Length = 554 Score = 30.8 bits (68), Expect = 3.1 Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 17/93 (18%) Frame = -3 Query: 356 RRRFCGHKEAAASCPRCSSLYPYHGRPKRCPAWPMELID--EAKVW--------IELHKR 207 R CGH C C S P HGR RCP + ++ D ++ VW +EL +R Sbjct: 27 RLLLCGH----TVCHDCLSRLPLHGRAIRCP-FDRQVTDLGDSGVWGLKKNFALLELLER 81 Query: 206 LHLQHTGSKCSTATVR-------ICVTDDEAHI 129 L H G + I +DEAH+ Sbjct: 82 LQNGHIGQYGAAEEALGISGESIIRCDEDEAHV 114
>MTR1A_PIG (O02781) Melatonin receptor type 1A (Mel-1A-R) (Mel1a melatonin| receptor) (Fragment) Length = 154 Score = 30.4 bits (67), Expect = 4.1 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = +1 Query: 91 WHITRYDLCTAYMICASSSVTQI--LTVAVLHFDPVCCRCSRLWSSIHTFASSMSS 252 W+ R LC ++IC + V + L + L +DP C TFA S+SS Sbjct: 13 WYSNRNSLCCVFLICVLTLVAIVPNLCMGTLQYDPRIYSC--------TFAQSVSS 60
>SYN_MYCPN (P75521) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 455 Score = 30.4 bits (67), Expect = 4.1 Identities = 18/60 (30%), Positives = 31/60 (51%) Frame = -1 Query: 499 ESLVSFVKNNLDLCKWAAVATVATQAFSLFLAMTLRAMVSPANADYDSEEDFVVIRRPLL 320 E + F +NN A + +A + F M +R+++S A DY + DFV++ P+L Sbjct: 113 EHSLEFFRNN---------AYLRVRARTYFAIMKVRSLLSQAIFDYFFKNDFVLVHSPIL 163
>IAAC2_WHEAT (P16851) Alpha-amylase/trypsin inhibitor CM2 precursor| (Chloroform/methanol-soluble protein CM2) Length = 145 Score = 30.0 bits (66), Expect = 5.3 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +3 Query: 3 PGCPND*VADFIQIDRMIGHTNVYSVHYT 89 PGCP + DF ++ GH NV +VH T Sbjct: 109 PGCPREPQRDFAKVLVTPGHCNVMTVHNT 137
>ARD1_MOUSE (Q8BGX0) GTP-binding protein ARD-1 (ADP-ribosylation factor domain| protein 1) (Tripartite motif protein 23) Length = 574 Score = 29.6 bits (65), Expect = 6.9 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 18/94 (19%) Frame = -3 Query: 356 RRRFCGHKEAAASCPRCSSLYPYHGRPKRCPAWPMELID--EAKVW--------IELHKR 207 R CGH C C + P HGR RCP + ++ D ++ VW +EL +R Sbjct: 47 RLLLCGH----TVCHDCLTRLPLHGRAIRCP-FDRQVTDLGDSGVWGLKKNFALLELLER 101 Query: 206 LHLQHTGS--------KCSTATVRICVTDDEAHI 129 L H G S ++ C +DEAH+ Sbjct: 102 LQNGHIGQYGAAEEAIGTSGESIIRC-DEDEAHV 134
>GUAA_DESVH (Q72D86) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 515 Score = 29.6 bits (65), Expect = 6.9 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Frame = -3 Query: 269 CPAWP-MELIDEAKVWIELHKRLHLQHTGSKC--STATVRICVTDDEAHIIYAV 117 CP W ++L ++VW+ ++ G K TAT+ + DEA IYAV Sbjct: 116 CPLWDGLDLGTTSRVWMSHGDKVKTPPPGFKVVGRTATLEVAAMADEARRIYAV 169
>REG2_YEAST (P38232) Protein REG2| Length = 338 Score = 29.3 bits (64), Expect = 9.1 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 8/91 (8%) Frame = -1 Query: 556 LLLNEHWIQDLPYDRTGELESLVSFVKNNLDLCKWAAVA--------TVATQAFSLFLAM 401 ++ +EH+IQ LP R + K+ LD C A + +V + ++ Sbjct: 179 IITDEHFIQRLPSTRLNSTDEQRPCSKSELDPCIGNAASKRSFYDYNSVYVASDAIITTA 238 Query: 400 TLRAMVSPANADYDSEEDFVVIRRPLLLAQG 308 A++S + DY D + R +LL G Sbjct: 239 AATAIISSNSGDYQRGHDVRDVPRNVLLQAG 269
>ANF1_XENLA (Q91898) Homeobox protein ANF-1 (XANF-1)| Length = 187 Score = 29.3 bits (64), Expect = 9.1 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = +3 Query: 471 LFLTKETRLSSSPVRSYGRSWIQCS 545 L L K+T ++SSP+ + R WI+CS Sbjct: 27 LGLDKKTDVASSPIIKHHRPWIECS 51
>IAAC1_WHEAT (P16850) Alpha-amylase/trypsin inhibitor CM1 precursor| (Chloroform/methanol-soluble protein CM1) Length = 145 Score = 29.3 bits (64), Expect = 9.1 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +3 Query: 3 PGCPND*VADFIQIDRMIGHTNVYSVH 83 PGCP + DF ++ GH NV +VH Sbjct: 109 PGCPREPQRDFAKVLVTSGHCNVMTVH 135 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,422,441 Number of Sequences: 219361 Number of extensions: 2103344 Number of successful extensions: 6519 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 6211 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6508 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)