ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61i21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BC040225.1| Homo sapiens cDNA clone IMAGE:5196381, partial cds Length = 582 Score = 436 bits (220), Expect = e-119 Identities = 259/272 (95%), Gaps = 3/272 (1%) Strand = Plus / Minus Query: 178 tagtcatcggccctgacgacgaagttctccttgcgctcgtggaactcgccggtgcgggtg 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 309 tagtcatcggccctgacgacgaagttctccttgcgctcgtggaactcgccggtgcgggtg 250 Query: 238 ttgatgtcctcctcgagcctgctctcgcgcacctngaagtggccggagccgcggccgtgg 297 |||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||||| Sbjct: 249 ttgatgtcctcctccagcctactctcgcgcacctcgaagtggccggagccacggccgtgg 190 Query: 298 tggccgtggcggcggccggcggtgtcgaactcctgcacgaacgtctccttgacgatgtgc 357 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 189 tgaccatggcggcggccggcggtgtcgaactcctgcacgaacgtctccttgacgatgtgc 130 Query: 358 tcctgcacgccgcc---gccgcggcgggccgggttgcccaccgccctcacctcctncgag 414 |||||||||||||| |||||||||| |||||| |||||||||||||||||||| |||| Sbjct: 129 tcctgcacgccgccgcagccgcggcggaccgggtagcccaccgccctcacctcctccgag 70 Query: 415 cagtagtccaccttctggaagtgcgccatgcc 446 ||||||||||||| |||||||||||||||||| Sbjct: 69 cagtagtccacctcctggaagtgcgccatgcc 38 Score = 131 bits (66), Expect = 2e-27 Identities = 90/98 (91%) Strand = Plus / Minus Query: 22 gcgcttatttaagcgatgcacacgcgcacgacaggagctgatagccgccaaacacgcacg 81 ||||||||||||||| ||||| ||||||||| || |||||||||||||||||||||||| Sbjct: 465 gcgcttatttaagcgctgcacgcgcgcacgatcggggctgatagccgccaaacacgcacg 406 Query: 82 cctgcatacgctatacgaccgtgcgcagcatcatacat 119 ||||||||||||||||||| ||||||| ||||| |||| Sbjct: 405 cctgcatacgctatacgactgtgcgcaacatcacacat 368
>gb|AC160211.1| Genomic seqeunce for Zea mays BAC clone ZMMBBb0448F23, complete sequence Length = 132549 Score = 103 bits (52), Expect = 5e-19 Identities = 76/84 (90%) Strand = Plus / Minus Query: 187 gccctgacgacgaagttctccttgcgctcgtggaactcgccggtgcgggtgttgatgtcc 246 |||||| ||| |||| ||||| |||||||||||| ||||||||||| ||||||||||||| Sbjct: 67870 gccctggcgaggaagctctccctgcgctcgtggacctcgccggtgcaggtgttgatgtcc 67811 Query: 247 tcctcgagcctgctctcgcgcacc 270 ||||||| |||| ||||||||||| Sbjct: 67810 tcctcgaccctggtctcgcgcacc 67787 Score = 60.0 bits (30), Expect = 7e-06 Identities = 38/41 (92%) Strand = Plus / Minus Query: 392 ccaccgccctcacctcctncgagcagtagtccaccttctgg 432 |||||| ||||||||||| ||||||||||||||||| |||| Sbjct: 67644 ccaccgacctcacctcctccgagcagtagtccacctcctgg 67604 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 335 cgaacgtctccttgacgatgtgctcctgcacgccgccgccgcggcgg 381 ||||| |||||||||||| ||||| ||| |||||||| ||| ||||| Sbjct: 67707 cgaacttctccttgacgacgtgctgctggacgccgcctccgtggcgg 67661
>gb|AY104409.1| Zea mays PCO124784 mRNA sequence Length = 553 Score = 103 bits (52), Expect = 5e-19 Identities = 76/84 (90%) Strand = Plus / Minus Query: 187 gccctgacgacgaagttctccttgcgctcgtggaactcgccggtgcgggtgttgatgtcc 246 |||||| ||| |||| ||||| |||||||||||| ||||||||||| ||||||||||||| Sbjct: 353 gccctggcgaggaagctctccctgcgctcgtggacctcgccggtgcaggtgttgatgtcc 294 Query: 247 tcctcgagcctgctctcgcgcacc 270 ||||||| |||| ||||||||||| Sbjct: 293 tcctcgaccctggtctcgcgcacc 270 Score = 60.0 bits (30), Expect = 7e-06 Identities = 38/41 (92%) Strand = Plus / Minus Query: 392 ccaccgccctcacctcctncgagcagtagtccaccttctgg 432 |||||| ||||||||||| ||||||||||||||||| |||| Sbjct: 127 ccaccgacctcacctcctccgagcagtagtccacctcctgg 87 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 335 cgaacgtctccttgacgatgtgctcctgcacgccgccgccgcggcgg 381 ||||| |||||||||||| ||||| ||| |||||||| ||| ||||| Sbjct: 190 cgaacttctccttgacgacgtgctgctggacgccgcctccgtggcgg 144
>emb|AJ242802.1|SST242802 Sporobolus stapfianus mRNA for putative glycine-rich protein Length = 562 Score = 101 bits (51), Expect = 2e-18 Identities = 101/117 (86%), Gaps = 2/117 (1%) Strand = Plus / Minus Query: 187 gccctgacgacgaagttctccttgcgctcgtggaactcgccggtgcgggtgttgatgtcc 246 |||||||| | || ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 347 gccctgacaaggacgttctccttgcgctcgtggaactcgccggtgcgcgtgttgatgtc- 289 Query: 247 tcctcgagcctgctctcgcgcacctngaagtggccggagccgcggccgtggtggccg 303 ||| | | || |||||||| ||| |||||||||||||||| |||| |||| |||| Sbjct: 288 -tctcaaacttggtctcgcgcgcctggaagtggccggagccgtggccttggttgccg 233 Score = 44.1 bits (22), Expect = 0.42 Identities = 37/42 (88%) Strand = Plus / Minus Query: 335 cgaacgtctccttgacgatgtgctcctgcacgccgccgccgc 376 |||||||||||||||||| | || ||| ||||||||||||| Sbjct: 177 cgaacgtctccttgacgacgaactgctggacgccgccgccgc 136
>ref|XM_463608.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 690 Score = 73.8 bits (37), Expect = 5e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 198 gaagttctccttgcgctcgtggaactcgccggtgcgggtgttgatgtcctcctcgagcct 257 |||| ||| |||||||||| ||||||||||||||| |||||||| ||||||||| | | | Sbjct: 672 gaagctctgcttgcgctcgcggaactcgccggtgcaggtgttgaagtcctcctccacctt 613 Query: 258 gctctcgcgcacc 270 | ||||||||||| Sbjct: 612 ggtctcgcgcacc 600 Score = 56.0 bits (28), Expect = 1e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 393 caccgccctcacctcctncgagcagtagtccacct 427 ||||| ||||||||||| ||||||||||||||||| Sbjct: 465 caccgacctcacctcctccgagcagtagtccacct 431 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 336 gaacgtctccttgacgatgtgctcctgc 363 ||||||||||||||||| ||||| |||| Sbjct: 531 gaacgtctccttgacgacgtgctgctgc 504
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 73.8 bits (37), Expect = 5e-10 Identities = 64/73 (87%) Strand = Plus / Plus Query: 198 gaagttctccttgcgctcgtggaactcgccggtgcgggtgttgatgtcctcctcgagcct 257 |||| ||| |||||||||| ||||||||||||||| |||||||| ||||||||| | | | Sbjct: 39676358 gaagctctgcttgcgctcgcggaactcgccggtgcaggtgttgaagtcctcctccacctt 39676417 Query: 258 gctctcgcgcacc 270 | ||||||||||| Sbjct: 39676418 ggtctcgcgcacc 39676430 Score = 63.9 bits (32), Expect = 5e-07 Identities = 46/51 (90%) Strand = Plus / Plus Query: 393 caccgccctcacctcctncgagcagtagtccaccttctggaagtgcgccat 443 ||||| ||||||||||| ||||||||||||||||| |||| |||| ||||| Sbjct: 39676565 caccgacctcacctcctccgagcagtagtccacctcctggtagtgagccat 39676615 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 336 gaacgtctccttgacgatgtgctcctgc 363 ||||||||||||||||| ||||| |||| Sbjct: 39676499 gaacgtctccttgacgacgtgctgctgc 39676526 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 cgggttgcccaccgccctca 403 |||||||||||||||||||| Sbjct: 23436306 cgggttgcccaccgccctca 23436325
>dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456E05 Length = 173699 Score = 73.8 bits (37), Expect = 5e-10 Identities = 64/73 (87%) Strand = Plus / Plus Query: 198 gaagttctccttgcgctcgtggaactcgccggtgcgggtgttgatgtcctcctcgagcct 257 |||| ||| |||||||||| ||||||||||||||| |||||||| ||||||||| | | | Sbjct: 157314 gaagctctgcttgcgctcgcggaactcgccggtgcaggtgttgaagtcctcctccacctt 157373 Query: 258 gctctcgcgcacc 270 | ||||||||||| Sbjct: 157374 ggtctcgcgcacc 157386 Score = 63.9 bits (32), Expect = 5e-07 Identities = 46/51 (90%) Strand = Plus / Plus Query: 393 caccgccctcacctcctncgagcagtagtccaccttctggaagtgcgccat 443 ||||| ||||||||||| ||||||||||||||||| |||| |||| ||||| Sbjct: 157521 caccgacctcacctcctccgagcagtagtccacctcctggtagtgagccat 157571 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 336 gaacgtctccttgacgatgtgctcctgc 363 ||||||||||||||||| ||||| |||| Sbjct: 157455 gaacgtctccttgacgacgtgctgctgc 157482
>dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0470A12 Length = 185095 Score = 73.8 bits (37), Expect = 5e-10 Identities = 64/73 (87%) Strand = Plus / Plus Query: 198 gaagttctccttgcgctcgtggaactcgccggtgcgggtgttgatgtcctcctcgagcct 257 |||| ||| |||||||||| ||||||||||||||| |||||||| ||||||||| | | | Sbjct: 27257 gaagctctgcttgcgctcgcggaactcgccggtgcaggtgttgaagtcctcctccacctt 27316 Query: 258 gctctcgcgcacc 270 | ||||||||||| Sbjct: 27317 ggtctcgcgcacc 27329 Score = 63.9 bits (32), Expect = 5e-07 Identities = 46/51 (90%) Strand = Plus / Plus Query: 393 caccgccctcacctcctncgagcagtagtccaccttctggaagtgcgccat 443 ||||| ||||||||||| ||||||||||||||||| |||| |||| ||||| Sbjct: 27464 caccgacctcacctcctccgagcagtagtccacctcctggtagtgagccat 27514 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 336 gaacgtctccttgacgatgtgctcctgc 363 ||||||||||||||||| ||||| |||| Sbjct: 27398 gaacgtctccttgacgacgtgctgctgc 27425
>emb|AJ131707.2|SGA131707 Streptomyces galbus fda gene, strain DSM 40480 Length = 1604 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 361 tgcacgccgccgccgcggcgggc 383 ||||||||||||||||||||||| Sbjct: 32 tgcacgccgccgccgcggcgggc 54
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 363 cacgccgccgccgcggcgggccg 385 ||||||||||||||||||||||| Sbjct: 1103507 cacgccgccgccgcggcgggccg 1103485
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 371 cgccgcggcgggccgggttgcc 392 |||||||||||||||||||||| Sbjct: 2529267 cgccgcggcgggccgggttgcc 2529246
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 371 cgccgcggcgggccgggttgcc 392 |||||||||||||||||||||| Sbjct: 3742792 cgccgcggcgggccgggttgcc 3742771
>gb|AC099597.6| Mus musculus chromosome 17, clone RP23-78K9, complete sequence Length = 272221 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 109 gcatcatacatgcgtacatgcataca 134 ||||||||||||| |||||||||||| Sbjct: 213503 gcatcatacatgcatacatgcataca 213528
>gb|AC105153.6| Mus musculus chromosome 17, clone RP24-376L20, complete sequence Length = 184920 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 109 gcatcatacatgcgtacatgcataca 134 ||||||||||||| |||||||||||| Sbjct: 96048 gcatcatacatgcatacatgcataca 96073
>emb|AL162373.16| Human DNA sequence from clone RP11-272M24 on chromosome 13 Contains a novel pseudogene, complete sequence Length = 176797 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 115 tacatgcgtacatgcatacaca 136 |||||||||||||||||||||| Sbjct: 5185 tacatgcgtacatgcatacaca 5164
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 371 cgccgcggcgggccgggttgcc 392 |||||||||||||||||||||| Sbjct: 3483162 cgccgcggcgggccgggttgcc 3483141
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 278 ggccggagccgcggccgtggtg 299 |||||||||||||||||||||| Sbjct: 17667 ggccggagccgcggccgtggtg 17646
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 246 ctcctcgagcctgctctcgcgcacct 271 ||||||||||||||||||| |||||| Sbjct: 3366985 ctcctcgagcctgctctcgggcacct 3367010 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 ctgcacgccgccgccgcggc 379 |||||||||||||||||||| Sbjct: 4680555 ctgcacgccgccgccgcggc 4680574 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 cgccggtgcgggtgttgatg 243 |||||||||||||||||||| Sbjct: 4407040 cgccggtgcgggtgttgatg 4407021 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 ccgccgccgcggcgggccgg 386 |||||||||||||||||||| Sbjct: 3911372 ccgccgccgcggcgggccgg 3911353
>gb|AY838899.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid dioxygenase 3 (NCED3) mRNA, complete cds Length = 2060 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 actcgccggtgcgggtgttga 241 ||||||||||||||||||||| Sbjct: 1569 actcgccggtgcgggtgttga 1549
>gb|AC135927.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683B02, complete sequence Length = 146435 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 385 gggttgcccaccgccctcacc 405 ||||||||||||||||||||| Sbjct: 69502 gggttgcccaccgccctcacc 69482
>gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1764_D01, complete sequence Length = 164709 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 cacgccgccgccgcggcgggc 383 ||||||||||||||||||||| Sbjct: 116687 cacgccgccgccgcggcgggc 116667
>gb|AC135928.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0686B10, complete sequence Length = 159672 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 385 gggttgcccaccgccctcacc 405 ||||||||||||||||||||| Sbjct: 120761 gggttgcccaccgccctcacc 120741
>gb|AC097832.7| Rattus norvegicus 11 BAC CH230-68C19 (Children's Hospital Oakland Research Institute) complete sequence Length = 262323 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 113 catacatgcgtacatgcatacacat 137 ||||||||| ||||||||||||||| Sbjct: 202729 catacatgcatacatgcatacacat 202753
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 323 cgaactcctgcacgaacgtctccttgacg 351 ||||||| ||| ||||||||||||||||| Sbjct: 127233 cgaactcgtgcccgaacgtctccttgacg 127261
>ref|NM_014661.3| Homo sapiens family with sequence similarity 53, member B (FAM53B), mRNA Length = 5740 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 ctcctgcacgccgccgccgcg 377 ||||||||||||||||||||| Sbjct: 24 ctcctgcacgccgccgccgcg 44
>gb|AY442299.1| Mus musculus mastermind-like 1 (Maml1) mRNA, complete cds Length = 3417 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 ggccgtggcggcggccggcgg 319 ||||||||||||||||||||| Sbjct: 481 ggccgtggcggcggccggcgg 461
>gb|AC083849.6| Homo sapiens BAC clone RP11-163I18 from 7, complete sequence Length = 128611 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 113 catacatgcgtacatgcatacacat 137 ||||||||| ||||||||||||||| Sbjct: 4915 catacatgcatacatgcatacacat 4891 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 113 catacatgcgtacatgcatacacat 137 ||||||||| ||||||||||||||| Sbjct: 4893 catacatgcatacatgcatacacat 4869 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 113 catacatgcgtacatgcatacacat 137 ||||||||| ||||||||||||||| Sbjct: 4871 catacatgcatacatgcatacacat 4847 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 catacatgcgtacatgcatacaca 136 ||||||||| |||||||||||||| Sbjct: 4827 catacatgcatacatgcatacaca 4804
>gb|AC073644.10| Homo sapiens BAC clone RP11-519M4 from 7, complete sequence Length = 174359 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 113 catacatgcgtacatgcatacacat 137 ||||||||| ||||||||||||||| Sbjct: 151291 catacatgcatacatgcatacacat 151267 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 113 catacatgcgtacatgcatacacat 137 ||||||||| ||||||||||||||| Sbjct: 151269 catacatgcatacatgcatacacat 151245 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 113 catacatgcgtacatgcatacacat 137 ||||||||| ||||||||||||||| Sbjct: 151247 catacatgcatacatgcatacacat 151223 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 catacatgcgtacatgcatacaca 136 ||||||||| |||||||||||||| Sbjct: 151203 catacatgcatacatgcatacaca 151180
>ref|XM_754009.1| Ustilago maydis 521 hypothetical protein (UM02955.1) partial mRNA Length = 885 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 ggccgtggtggccgtggcggc 310 ||||||||||||||||||||| Sbjct: 814 ggccgtggtggccgtggcggc 834 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 283 gagccgcggccgtggtggccgtggc 307 ||||||||| ||||||||||||||| Sbjct: 249 gagccgcggtcgtggtggccgtggc 273
>emb|AL162754.2|NMA3Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 3/7 Length = 311321 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 355 tgctcctgcacgccgccgccg 375 ||||||||||||||||||||| Sbjct: 36685 tgctcctgcacgccgccgccg 36665
>emb|AL646002.6| Mouse DNA sequence from clone RP23-237P10 on chromosome 11 Contains gene D930008C07Rik, the Canx gene for calnexin, a high mobility group nucleosomal binding domain 2 (Hmgn2) pseudogene and two CpG islands, complete sequence Length = 113907 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 299 ggccgtggcggcggccggcgg 319 ||||||||||||||||||||| Sbjct: 49346 ggccgtggcggcggccggcgg 49366
>emb|CR354424.7| Zebrafish DNA sequence from clone CH211-125L9 in linkage group 24, complete sequence Length = 156999 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 116 acatgcgtacatgcatacaca 136 ||||||||||||||||||||| Sbjct: 117662 acatgcgtacatgcatacaca 117642
>gb|AE005958.1| Caulobacter crescentus CB15 section 284 of 359 of the complete genome Length = 13027 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 gcggcggccggcggtgtcgaa 326 ||||||||||||||||||||| Sbjct: 11576 gcggcggccggcggtgtcgaa 11596
>gb|AE005689.1| Caulobacter crescentus CB15 section 15 of 359 of the complete genome Length = 11119 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 348 gacgatgtgctcctgcacgccgccg 372 ||||||||||| ||||||||||||| Sbjct: 10639 gacgatgtgctgctgcacgccgccg 10663
>emb|CR607450.1| full-length cDNA clone CS0DL002YA10 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1630 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 ctcctgcacgccgccgccgcg 377 ||||||||||||||||||||| Sbjct: 24 ctcctgcacgccgccgccgcg 44
>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183327 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 actcgccggtgcgggtgttga 241 ||||||||||||||||||||| Sbjct: 144370 actcgccggtgcgggtgttga 144350
>gb|AC068896.9| Homo sapiens chromosome 10 clone RP11-464O2, complete sequence Length = 194905 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 357 ctcctgcacgccgccgccgcg 377 ||||||||||||||||||||| Sbjct: 51338 ctcctgcacgccgccgccgcg 51318
>gb|DQ145931.1| Hordeum vulgare subsp. vulgare 9-cis-epoxycarotenoid dioxygenase 2 mRNA, complete cds Length = 1830 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 actcgccggtgcgggtgttga 241 ||||||||||||||||||||| Sbjct: 1361 actcgccggtgcgggtgttga 1341
>dbj|AK046551.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length enriched library, clone:B430005K18 product:unclassifiable, full insert sequence Length = 1744 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 299 ggccgtggcggcggccggcgg 319 ||||||||||||||||||||| Sbjct: 405 ggccgtggcggcggccggcgg 425
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 cacgccgccgccgcggcgggc 383 ||||||||||||||||||||| Sbjct: 18949309 cacgccgccgccgcggcgggc 18949289 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 385 gggttgcccaccgccctcacc 405 ||||||||||||||||||||| Sbjct: 17323449 gggttgcccaccgccctcacc 17323429
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 actcgccggtgcgggtgttga 241 ||||||||||||||||||||| Sbjct: 24765681 actcgccggtgcgggtgttga 24765661 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 cgtacatgcatacacatcgtagta 144 |||||||||||||| ||||||||| Sbjct: 35926875 cgtacatgcatacaaatcgtagta 35926852
>gb|AC009720.19| Homo sapiens chromosome 17, clone RP11-1094H24, complete sequence Length = 146101 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 atacatgcgtacatgcataca 134 ||||||||||||||||||||| Sbjct: 35871 atacatgcgtacatgcataca 35851
>gb|AC091533.27| Mus musculus strain C57BL/6J chromosome 11 clone rp23-30n4, complete sequence Length = 192628 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 ggccgtggcggcggccggcgg 319 ||||||||||||||||||||| Sbjct: 6654 ggccgtggcggcggccggcgg 6634
>gb|AF229646.1|AF229646 Caulobacter crescentus pilus assembly gene cluster Length = 8959 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 gcggcggccggcggtgtcgaa 326 ||||||||||||||||||||| Sbjct: 2848 gcggcggccggcggtgtcgaa 2828
>dbj|AK129088.1| Mus musculus mRNA for mKIAA0200 protein Length = 5518 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 ggccgtggcggcggccggcgg 319 ||||||||||||||||||||| Sbjct: 504 ggccgtggcggcggccggcgg 484
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 gcggccgtggtggccgtggcg 308 ||||||||||||||||||||| Sbjct: 3648028 gcggccgtggtggccgtggcg 3648048
>gb|AY107134.1| Zea mays PCO091958 mRNA sequence Length = 495 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 361 tgcacgccgccgccgcggcgg 381 ||||||||||||||||||||| Sbjct: 268 tgcacgccgccgccgcggcgg 288
>gb|AC102602.9| Mus musculus chromosome 9, clone RP23-381L11, complete sequence Length = 253504 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 catacatgcgtacatgcatac 133 ||||||||||||||||||||| Sbjct: 97511 catacatgcgtacatgcatac 97491
>gb|DQ275159.1| Streptomyces globisporus LndJ (lndJ) gene, complete cds Length = 1706 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 290 ggccgtggtggccgtggcggcggcc 314 |||||||||||||||||||| |||| Sbjct: 869 ggccgtggtggccgtggcgggggcc 893
>dbj|D37875.1|RERAMOA Nocardia corallina gene cluster for alkene monooxygenase (genes for epoxidase subunits, coupling protein and reductase), complete cds Length = 6379 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 364 acgccgccgccgcggcgggcc 384 ||||||||||||||||||||| Sbjct: 6116 acgccgccgccgcggcgggcc 6136
>gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome Length = 150715 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 gccgtggcggcggccggcgg 319 |||||||||||||||||||| Sbjct: 32271 gccgtggcggcggccggcgg 32252
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 gcggccgtggtggccgtggc 307 |||||||||||||||||||| Sbjct: 655609 gcggccgtggtggccgtggc 655590
>ref|NM_197037.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0093B11.14), mRNA Length = 1191 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 288 gcggccgtggtggccgtggcggcggccg 315 ||||| |||||||| ||||||||||||| Sbjct: 920 gcggcggtggtggcggtggcggcggccg 893
>ref|NM_196531.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0053G13.5), mRNA Length = 1458 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gcacgccgccgccgcggcgg 381 |||||||||||||||||||| Sbjct: 1213 gcacgccgccgccgcggcgg 1194
>ref|XM_463378.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1332 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 cgggttgcccaccgccctca 403 |||||||||||||||||||| Sbjct: 687 cgggttgcccaccgccctca 706
>ref|XM_478024.1| Oryza sativa (japonica cultivar-group), mRNA Length = 792 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 287 cgcggccgtggtggccgtggcggc 310 ||||| |||||||||||||||||| Sbjct: 517 cgcggtcgtggtggccgtggcggc 540
>ref|XM_473672.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1806 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 286 ccgcggccgtggtggccgtggcggcggc 313 ||||||||| || ||||||||||||||| Sbjct: 268 ccgcggccgcggcggccgtggcggcggc 241
>ref|XM_471759.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1089 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 acgccgccgccgcggcgggc 383 |||||||||||||||||||| Sbjct: 218 acgccgccgccgcggcgggc 237
>ref|XM_471749.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1089 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 acgccgccgccgcggcgggc 383 |||||||||||||||||||| Sbjct: 218 acgccgccgccgcggcgggc 237
>gb|AC128647.8| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0062G19, complete sequence Length = 92392 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 cgtacatgcatacacatcgtagta 144 |||||||||||||| ||||||||| Sbjct: 90684 cgtacatgcatacaaatcgtagta 90661
>ref|XM_363450.1| Magnaporthe grisea 70-15 hypothetical protein (MG01376.4) partial mRNA Length = 3420 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 tctccttgcgctcgtggaactcgc 226 ||||||||| |||||||||||||| Sbjct: 2463 tctccttgcactcgtggaactcgc 2486
>gb|AC141477.4| Mus musculus BAC clone RP23-386J14 from chromosome 10, complete sequence Length = 213720 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 catacatgcgtacatgcatacaca 136 ||||||||| |||||||||||||| Sbjct: 91816 catacatgcatacatgcatacaca 91839
>gb|AY658901.1| Synthetic construct Peudomonas aeruginosa clone FLH047344.01F PA4404 gene, partial cds Length = 924 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cgtggtggccgtggcggcgg 312 |||||||||||||||||||| Sbjct: 645 cgtggtggccgtggcggcgg 664
>ref|XM_954550.1| Neurospora crassa OR74A DNA MISMATCH REPAIR PROTEIN MSH2 (NCU02230.1) partial mRNA Length = 2814 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 tctccttgacgatgtgctcc 360 |||||||||||||||||||| Sbjct: 2290 tctccttgacgatgtgctcc 2271
>ref|XM_331005.1| Neurospora crassa OR74A DNA MISMATCH REPAIR PROTEIN MSH2 (NCU02230.1) partial mRNA Length = 2814 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 tctccttgacgatgtgctcc 360 |||||||||||||||||||| Sbjct: 2290 tctccttgacgatgtgctcc 2271
>ref|XM_655383.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2871.2), mRNA Length = 2613 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ggccgtggtggccgtggcgg 309 |||||||||||||||||||| Sbjct: 457 ggccgtggtggccgtggcgg 476
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 cgtacatgcatacacatcgtagta 144 |||||||||||||| ||||||||| Sbjct: 35836745 cgtacatgcatacaaatcgtagta 35836722
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 gccgtggtggccgtggcggc 310 |||||||||||||||||||| Sbjct: 2313259 gccgtggtggccgtggcggc 2313278 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 gtggtggccgtggcggcggc 313 |||||||||||||||||||| Sbjct: 1837838 gtggtggccgtggcggcggc 1837857
>gb|AC131794.3| Mus musculus BAC clone RP24-486P14 from chromosome 9, complete sequence Length = 166272 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 110 catcatacatgcgtacatgcatacacat 137 ||||||| |||| ||||||||||||||| Sbjct: 43952 catcataaatgcatacatgcatacacat 43979
>ref|XM_801122.1| Trypanosoma cruzi strain CL Brener nucleosome assembly protein-like protein (Tc00.1047053505983.20) partial mRNA Length = 1368 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ggccgtggtggccgtggcgg 309 |||||||||||||||||||| Sbjct: 1318 ggccgtggtggccgtggcgg 1337
>gb|AC124534.4| Mus musculus BAC clone RP23-316G7 from chromosome 1, complete sequence Length = 177675 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 catacatgcgtacatgcatacaca 136 |||||||| ||||||||||||||| Sbjct: 2877 catacatgtgtacatgcatacaca 2900
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 gccgcggccgtggtggccgt 304 |||||||||||||||||||| Sbjct: 1979701 gccgcggccgtggtggccgt 1979720
>gb|AC158386.4| Mus musculus chromosome 3, clone RP24-281K23, complete sequence Length = 177594 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 catacatgcgtacatgcatacaca 136 ||||||||| |||||||||||||| Sbjct: 170734 catacatgcatacatgcatacaca 170711
>ref|XM_963923.1| PREDICTED: Tribolium castaneum similar to CG12749-PB, isoform B (LOC657465), mRNA Length = 1536 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 293 cgtggtggccgtggcggcggccgg 316 ||||| |||||||||||||||||| Sbjct: 758 cgtggaggccgtggcggcggccgg 781
>emb|X79146.1|SLLINC S.lincolnensis (78-11) Lincomycin production genes Length = 36270 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 ggtggccgtggcggcggccg 315 |||||||||||||||||||| Sbjct: 30366 ggtggccgtggcggcggccg 30385
>emb|X62517.1|SSNDHAIGE Synechocystis sp.PCC6803 ndhA, ndhI, ndhG & ndhE genes for NADH-dehydrogenase subunits Length = 3229 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 cggtgcgggtgttgatgtcc 246 |||||||||||||||||||| Sbjct: 2784 cggtgcgggtgttgatgtcc 2803
>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29 Length = 292200 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 ggcggccggcggtgtcgaac 327 |||||||||||||||||||| Sbjct: 261393 ggcggccggcggtgtcgaac 261374
>emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0024J22, complete sequence Length = 174430 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 acgccgccgccgcggcgggc 383 |||||||||||||||||||| Sbjct: 116307 acgccgccgccgcggcgggc 116288
>emb|AL662942.4|OSJN00135 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033H08, complete sequence Length = 141899 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 acgccgccgccgcggcgggc 383 |||||||||||||||||||| Sbjct: 92377 acgccgccgccgcggcgggc 92358
>emb|AL662957.2|OSJN00157 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0013K16, complete sequence Length = 145739 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 286 ccgcggccgtggtggccgtggcggcggc 313 ||||||||| || ||||||||||||||| Sbjct: 53191 ccgcggccgcggcggccgtggcggcggc 53218
>gb|AC153012.4| Mus musculus BAC clone RP23-302F19 from chromosome 9, complete sequence Length = 196764 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 110 catcatacatgcgtacatgcatacacat 137 ||||||| |||| ||||||||||||||| Sbjct: 12473 catcataaatgcatacatgcatacacat 12500
>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete sequence Length = 178692 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 288 gcggccgtggtggccgtggcggcggccg 315 ||||| |||||||| ||||||||||||| Sbjct: 36834 gcggcggtggtggcggtggcggcggccg 36807
>gb|AC108686.3| Homo sapiens X BAC RP11-263A21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 157104 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 catacatgcgtacatgcatacaca 136 ||||||| |||||||||||||||| Sbjct: 94836 catacatacgtacatgcatacaca 94813
>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete sequence Length = 145115 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 cgtacatgcatacacatcgtagta 144 |||||||||||||| ||||||||| Sbjct: 124380 cgtacatgcatacaaatcgtagta 124403
>emb|BX682531.11| Zebrafish DNA sequence from clone CH211-12C17 in linkage group 23, complete sequence Length = 171113 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 catacatgcgtacatgcatacaca 136 ||||||||| |||||||||||||| Sbjct: 58023 catacatgcatacatgcatacaca 58046 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 catacatgcgtacatgcatacaca 136 ||||||||| |||||||||||||| Sbjct: 57895 catacatgcatacatgcatacaca 57918
>gb|AY129331.1| Mycobacteriophage CJW1, complete genome Length = 75931 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 gcggccgtggtggccgtggcggcg 311 |||||||||||||| ||||||||| Sbjct: 14593 gcggccgtggtggcggtggcggcg 14570
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 286 ccgcggccgtggtggccgtggcggcggc 313 ||||||||| || ||||||||||||||| Sbjct: 29550502 ccgcggccgcggcggccgtggcggcggc 29550529 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 acgccgccgccgcggcgggc 383 |||||||||||||||||||| Sbjct: 14080570 acgccgccgccgcggcgggc 14080589 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 acgccgccgccgcggcgggc 383 |||||||||||||||||||| Sbjct: 14002427 acgccgccgccgcggcgggc 14002408
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 acgccgccgccgcggcgggc 383 |||||||||||||||||||| Sbjct: 26255168 acgccgccgccgcggcgggc 26255187
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 288 gcggccgtggtggccgtggcggcggccg 315 ||||| |||||||| ||||||||||||| Sbjct: 17637797 gcggcggtggtggcggtggcggcggccg 17637824 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gcacgccgccgccgcggcgg 381 |||||||||||||||||||| Sbjct: 14272241 gcacgccgccgccgcggcgg 14272222
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 cgccgccgccgcggcgggcc 384 |||||||||||||||||||| Sbjct: 18326473 cgccgccgccgcggcgggcc 18326454
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 gcacgccgccgccgcggcgg 381 |||||||||||||||||||| Sbjct: 19182214 gcacgccgccgccgcggcgg 19182233 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 287 cgcggccgtggtggccgtggcggc 310 ||||| |||||||||||||||||| Sbjct: 16721672 cgcggtcgtggtggccgtggcggc 16721649
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 cgccgccgccgcggcgggcc 384 |||||||||||||||||||| Sbjct: 21002463 cgccgccgccgcggcgggcc 21002444 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 gtggtggccgtggcggcggc 313 |||||||||||||||||||| Sbjct: 20175458 gtggtggccgtggcggcggc 20175477 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 cgcggccgtggtggccgtgg 306 |||||||||||||||||||| Sbjct: 1092851 cgcggccgtggtggccgtgg 1092870
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 290 ggccgtggtggccgtggcggcggc 313 |||||||||||| ||||||||||| Sbjct: 12816301 ggccgtggtggcggtggcggcggc 12816324
>gb|AC027662.2|AC027662 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0053G13, complete sequence Length = 138245 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gcacgccgccgccgcggcgg 381 |||||||||||||||||||| Sbjct: 19516 gcacgccgccgccgcggcgg 19497
>gb|AF094698.1|AF094698 Sphoeroides nephelus immune-type receptor 1-5, 7 and 9-26 genes, complete cds and immune-type receptor 6 and 8, pseudogenes, complete sequence Length = 113426 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 catacatgcgtacatgcatacaca 136 ||||||||| |||||||||||||| Sbjct: 56029 catacatgcatacatgcatacaca 56006
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 306 gcggcggccggcggtgtcgaactcctgc 333 |||||||||| ||| ||||||||||||| Sbjct: 1958045 gcggcggccgccggagtcgaactcctgc 1958072
>gb|AE004856.1| Pseudomonas aeruginosa PAO1, section 417 of 529 of the complete genome Length = 24000 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 cgtggtggccgtggcggcgg 312 |||||||||||||||||||| Sbjct: 4618 cgtggtggccgtggcggcgg 4599
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome Length = 3573470 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 cggtgcgggtgttgatgtcc 246 |||||||||||||||||||| Sbjct: 3267470 cggtgcgggtgttgatgtcc 3267451
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463G11 Length = 154188 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 cgccgccgccgcggcgggcc 384 |||||||||||||||||||| Sbjct: 41209 cgccgccgccgcggcgggcc 41190
>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0007G12 Length = 111819 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 gtggtggccgtggcggcggc 313 |||||||||||||||||||| Sbjct: 41458 gtggtggccgtggcggcggc 41477
>dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0660D08 Length = 146915 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 cgcggccgtggtggccgtgg 306 |||||||||||||||||||| Sbjct: 69074 cgcggccgtggtggccgtgg 69093
>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1103C09 Length = 163996 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 cgggttgcccaccgccctca 403 |||||||||||||||||||| Sbjct: 162004 cgggttgcccaccgccctca 162023
>dbj|AP004739.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0090E14 Length = 161119 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 cgccgccgccgcggcgggcc 384 |||||||||||||||||||| Sbjct: 129387 cgccgccgccgcggcgggcc 129368
>gb|AC109146.26| Mus musculus chromosome 8, clone RP23-54G23, complete sequence Length = 197868 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 catacatgcgtacatgcatacaca 136 ||||||||| |||||||||||||| Sbjct: 26780 catacatgcatacatgcatacaca 26803
>dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0062D12 Length = 155408 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 gcacgccgccgccgcggcgg 381 |||||||||||||||||||| Sbjct: 105609 gcacgccgccgccgcggcgg 105628
>dbj|AP003808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1115_C05 Length = 146585 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 287 cgcggccgtggtggccgtggcggc 310 ||||| |||||||||||||||||| Sbjct: 61584 cgcggtcgtggtggccgtggcggc 61561
>dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0073A18 Length = 176755 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 290 ggccgtggtggccgtggcggcggc 313 |||||||||||| ||||||||||| Sbjct: 35783 ggccgtggtggcggtggcggcggc 35806
>dbj|AK121840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101B22, full insert sequence Length = 3330 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 ggccgtggtggccgtggcggcggc 313 |||||||||||| ||||||||||| Sbjct: 71 ggccgtggtggcggtggcggcggc 48
>dbj|AK122183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150B12, full insert sequence Length = 1987 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 288 gcggccgtggtggccgtggcggcggccg 315 ||||| |||||||| ||||||||||||| Sbjct: 102 gcggcggtggtggcggtggcggcggccg 75
>dbj|AK121098.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069E11, full insert sequence Length = 714 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 288 gcggccgtggtggccgtggcggcggccg 315 ||||| |||||||| ||||||||||||| Sbjct: 101 gcggcggtggtggcggtggcggcggccg 74
>dbj|AK110922.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D03, full insert sequence Length = 1551 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gcacgccgccgccgcggcgg 381 |||||||||||||||||||| Sbjct: 1164 gcacgccgccgccgcggcgg 1145
>gb|U19797.2|PAU19797 Pseudomonas aeruginosa D-alanine:D-alanine ligase B (ddlB), FtsQ (ftsQ), FtsA (ftsA), FtsZ (ftsZ), UDP-3-0-acyl N-acetylglucosamine deacetylase (lpxC), hypothetical protein, and preprotein translocase (secA) genes, complete cds Length = 10387 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cgtggtggccgtggcggcgg 312 |||||||||||||||||||| Sbjct: 6627 cgtggtggccgtggcggcgg 6646
>dbj|AK103548.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132E24, full insert sequence Length = 2145 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 286 ccgcggccgtggtggccgtggcggcggc 313 ||||||||| || ||||||||||||||| Sbjct: 352 ccgcggccgcggcggccgtggcggcggc 325
>dbj|AK103148.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033120L07, full insert sequence Length = 2210 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 acgccgccgccgcggcgggc 383 |||||||||||||||||||| Sbjct: 199 acgccgccgccgcggcgggc 180
>dbj|AK102408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092M06, full insert sequence Length = 1687 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 cgccgccgccgcggcgggcc 384 |||||||||||||||||||| Sbjct: 86 cgccgccgccgcggcgggcc 67
>dbj|AK101044.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033004K16, full insert sequence Length = 2864 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 acgccgccgccgcggcgggc 383 |||||||||||||||||||| Sbjct: 197 acgccgccgccgcggcgggc 178
>gb|L04950.1|WALMHCI01X Macropus rufogriseus MHC class I protein (Maru-UA*01) mRNA, 3' end Length = 1470 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 ggccggagccgcggccgtgg 297 |||||||||||||||||||| Sbjct: 176 ggccggagccgcggccgtgg 195
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 288 gcggccgtggtggccgtggcggcggccg 315 ||||| |||||||| ||||||||||||| Sbjct: 17646837 gcggcggtggtggcggtggcggcggccg 17646864 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gcacgccgccgccgcggcgg 381 |||||||||||||||||||| Sbjct: 14280483 gcacgccgccgccgcggcgg 14280464
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 acgccgccgccgcggcgggc 383 |||||||||||||||||||| Sbjct: 26183344 acgccgccgccgcggcgggc 26183363
>emb|AL731885.4|CNS08C8P Oryza sativa chromosome 12, . BAC OSJNBb0016A10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 133978 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 acgccgccgccgcggcgggc 383 |||||||||||||||||||| Sbjct: 19152 acgccgccgccgcggcgggc 19171
>dbj|AB066265.2| Triticum aestivum WCSP1 mRNA for cold shock protein-1, complete cds Length = 1029 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 gtggtggccgtggcggcggc 313 |||||||||||||||||||| Sbjct: 657 gtggtggccgtggcggcggc 676
>gb|AC158748.9| Mus musculus chromosome 7, clone RP23-239H14, complete sequence Length = 167144 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 catacatgcgtacatgcatacaca 136 |||||||||| ||||||||||||| Sbjct: 107185 catacatgcgcacatgcatacaca 107208
>gb|AC133515.3| Mus musculus BAC clone RP23-236E15 from 1, complete sequence Length = 175639 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 catacatgcgtacatgcatacaca 136 |||||||| ||||||||||||||| Sbjct: 50538 catacatgtgtacatgcatacaca 50515
>gb|AF030634.1|AF030634 Neurospora crassa DNA mismatch repair protein (MSH2) gene, complete cds Length = 3781 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 tctccttgacgatgtgctcc 360 |||||||||||||||||||| Sbjct: 2678 tctccttgacgatgtgctcc 2659
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 288 gcggccgtggtggccgtggcggcggccggcgg 319 ||||| ||||||||||| ||||| |||||||| Sbjct: 967420 gcggcggtggtggccgttgcggccgccggcgg 967451
>dbj|AP006424.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT13E04, TM0314, complete sequence Length = 126349 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 296 ggtggccgtggcggcggccggcggtgtc 323 |||||| ||||||||||||||| ||||| Sbjct: 99437 ggtggctgtggcggcggccggcagtgtc 99464
>emb|AL844891.7| Mouse DNA sequence from clone RP23-350N21 on chromosome 2, complete sequence Length = 138602 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 catacatgcgtacatgcatacaca 136 ||||||||| |||||||||||||| Sbjct: 35017 catacatgcatacatgcatacaca 34994
>emb|AL807399.5| Mouse DNA sequence from clone RP23-382O11 on chromosome 4, complete sequence Length = 181004 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 catacatgcgtacatgcatacaca 136 ||||||||| |||||||||||||| Sbjct: 91396 catacatgcatacatgcatacaca 91373
>gb|AC102164.7| Mus musculus chromosome 3, clone RP23-438M14, complete sequence Length = 184952 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 catacatgcgtacatgcatacaca 136 ||||||||| |||||||||||||| Sbjct: 116173 catacatgcatacatgcatacaca 116196 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,427,444 Number of Sequences: 3902068 Number of extensions: 3427444 Number of successful extensions: 99046 Number of sequences better than 10.0: 129 Number of HSP's better than 10.0 without gapping: 135 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94499 Number of HSP's gapped (non-prelim): 4519 length of query: 486 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 464 effective length of database: 17,147,199,772 effective search space: 7956300694208 effective search space used: 7956300694208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
