>DHAA_RHILO (Q98C03) Haloalkane dehalogenase (EC 3.8.1.5)|
          Length = 309

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 226 IIFVRQVWYAELRFHGSMR--SRIHGLLFLAIINFLQHWDSFH 104
           ++ V Q W   L FH + R   R+ GL F+  I   + W+ FH
Sbjct: 104 VLLVAQDWGTALAFHLAARRPQRVLGLAFMEFIRPFERWEDFH 146

>TRUA_BUCAI (P57295) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 266

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 138 IAKKRRPWIRDRIEP*NLSSAYQTCLTKMMYRFVVSHLKHYFL 266
           I+KK+  WI+D +E  + S A  T   K +Y   V +  H+ L
Sbjct: 213 ISKKKEYWIKDLLEKKDRSHAGATAPAKGLYLVYVEYPLHFNL 255

>UL92_EBV (P03223) Protein BDLF4|
          Length = 225

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 153 RPWIRDRIEP*NLSSAYQTCLTKMMYRFVVSHLKHYFLN 269
           RPW   R +  +    ++    + + + VV+HL HYFLN
Sbjct: 88  RPWTEIRQDTQDQRDKWEPEQVQGLVKTVVNHLYHYFLN 126

>ITB1_BOVIN (P53712) Integrin beta-1 (Fibronectin receptor beta subunit)|
           (Integrin VLA-4 beta subunit) (CD29 antigen) (Fragment)
          Length = 773

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 381 QLCQKNYDCQCSIARHGPQRFFGPTTELC 295
           Q+C     C+C   +    +F GPT E+C
Sbjct: 582 QICNGRGVCECGACKCTDPKFQGPTCEMC 610

>ITB1_CHICK (P07228) Integrin beta-1 precursor (CSAT antigen) (JG22 antigen)|
           (RGD-receptor)
          Length = 803

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 381 QLCQKNYDCQCSIARHGPQRFFGPTTELC 295
           Q+C     C+C        +F GPT E+C
Sbjct: 610 QICNGRGTCECGTCNCTDPKFQGPTCEMC 638

>ITB1_FELCA (P53713) Integrin beta-1 precursor (Fibronectin receptor beta|
           subunit) (Integrin VLA-4 beta subunit) (CD29 antigen)
          Length = 798

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 381 QLCQKNYDCQCSIARHGPQRFFGPTTELC 295
           Q+C     C+C   +    +F GPT E+C
Sbjct: 605 QICNGRGICECGACKCTDPKFQGPTCEMC 633

>MRAW_MANSM (Q65RX8) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 322

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +3

Query: 285 KTSSTALWWDQKTVEDRAWRLNTGNHNSFGK 377
           K  S A W  Q T ED AW L T     F K
Sbjct: 137 KGLSAAQWLQQVTEEDLAWVLKTFGEERFAK 167

>DHAA_BRAJA (P59337) Haloalkane dehalogenase (EC 3.8.1.5)|
          Length = 310

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 238 TNLYIIFVRQVWYAELRFHGSMRSR--IHGLLFLAIINFLQHWDSFHCIQI 92
           T+ Y+  V Q W   L FH + R    + GL F+  I  +  W  FH  ++
Sbjct: 95  TSAYL--VAQDWGTALAFHLAARRPDFVRGLAFMEFIRPMPTWQDFHHTEV 143


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,722,837
Number of Sequences: 219361
Number of extensions: 988703
Number of successful extensions: 2218
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2218
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)