Clone Name | rbah61i12 |
---|---|
Clone Library Name | barley_pub |
>gb|AC011411.4| Homo sapiens chromosome 5 clone CTB-78O21, complete sequence Length = 163864 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 254 acactatttccttaattataag 275 |||||||||||||||||||||| Sbjct: 31626 acactatttccttaattataag 31647
>ref|XM_671767.1| Plasmodium berghei strain ANKA hypothetical protein (PB100656.00.0) partial mRNA Length = 4578 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 cagtgttgtagaaaatttatt 137 ||||||||||||||||||||| Sbjct: 4272 cagtgttgtagaaaatttatt 4292
>emb|AL163763.1|ATF18O21 Arabidopsis thaliana DNA chromosome 3, BAC clone F18O21 Length = 99492 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 258 tatttccttaattataagaac 278 ||||||||||||||||||||| Sbjct: 72221 tatttccttaattataagaac 72201
>gb|AC094571.8| Rattus norvegicus 20 BAC CH230-4L21 (Children's Hospital Oakland Research Institute) complete sequence Length = 230137 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 ctaagctcagcataccaaac 208 |||||||||||||||||||| Sbjct: 207234 ctaagctcagcataccaaac 207253
>gb|AC069309.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-154D15, complete sequence Length = 174754 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 58883 cagcacagctctgtggtggg 58902
>ref|NM_001025372.1| Mus musculus adenylate cyclase activating polypeptide 1 receptor 1 (Adcyap1r1), transcript variant 2, mRNA Length = 6176 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 1371 cagcacagctctgtggtggg 1390
>ref|NM_007407.3| Mus musculus adenylate cyclase activating polypeptide 1 receptor 1 (Adcyap1r1), transcript variant 1, mRNA Length = 6260 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 1371 cagcacagctctgtggtggg 1390
>ref|NM_001118.3| Homo sapiens adenylate cyclase activating polypeptide 1 (pituitary) receptor type I (ADCYAP1R1), mRNA Length = 1643 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 1126 cagcacagctctgtggtggg 1145
>gb|AC144633.3| Mus musculus BAC clone RP23-26J4 from chromosome 7, complete sequence Length = 223362 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 acagctctgtggtgggacca 316 |||||||||||||||||||| Sbjct: 163022 acagctctgtggtgggacca 163003
>gb|AY495952.1| Homo sapiens pituitary adenylate cyclase activating polypeptide 1 receptor type I HopII variant (ADCYAP1R1) mRNA, partial cds, alternatively spliced Length = 342 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 52 cagcacagctctgtggtggg 71
>gb|AY495951.1| Homo sapiens pituitary adenylate cyclase activating polypeptide 1 receptor type I Hip variant (ADCYAP1R1) mRNA, partial cds, alternatively spliced Length = 345 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 52 cagcacagctctgtggtggg 71
>gb|AY462279.1| Homo sapiens pituitary adenylate cyclase activating polypeptide 1 receptor type I Hop splice variant (ADCYAP1R1) mRNA, partial cds; alternatively spliced Length = 345 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 52 cagcacagctctgtggtggg 71
>gb|AY462278.1| Homo sapiens pituitary adenylate cyclase activating polypeptide 1 receptor type I Hiphop splice variant (ADCYAP1R1) mRNA, partial cds; alternatively spliced Length = 429 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 52 cagcacagctctgtggtggg 71
>gb|AC123946.4| Mus musculus BAC clone RP23-97L17 from chromosome 12, complete sequence Length = 193610 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 tttggatacaatggaaagaa 113 |||||||||||||||||||| Sbjct: 53420 tttggatacaatggaaagaa 53401
>gb|AC129213.4| Mus musculus BAC clone RP24-391M2 from chromosome 6, complete sequence Length = 154613 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 149758 cagcacagctctgtggtggg 149777
>gb|AY366498.1| Homo sapiens pituitary adenyl cyclase activating polypeptide 1 receptor type 1 (ADCYAP1R1) mRNA, complete cds Length = 1407 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 903 cagcacagctctgtggtggg 922
>emb|AL353657.26| Human DNA sequence from clone RP11-100C24 on chromosome 13q14.3-21.2 Contains a mitochondrial cytochrome c oxidase II (MTCO2) pseudogene, complete sequence Length = 79600 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aaaatttattattgctaaga 147 |||||||||||||||||||| Sbjct: 10352 aaaatttattattgctaaga 10371
>emb|AL354776.15| Human DNA sequence from clone RP11-196N14 on chromosome 20 Contains the 3' end of the PPP4R1L gene for protein phosphatase 4 regulatory subunit 1-like, the C20orf85 gene for an ankyrin domain-containing protein, the C20orf86 gene and three CpG islands, complete sequence Length = 146208 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 ccagcacagctctgtggtgg 311 |||||||||||||||||||| Sbjct: 107536 ccagcacagctctgtggtgg 107517
>gb|AF443846.1| Vibrio cholerae type 2 strain V208 putative core OS biosynthesis (wav) gene cluster, partial sequence Length = 4162 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 atcccagtgttgtagaaaat 132 |||||||||||||||||||| Sbjct: 2197 atcccagtgttgtagaaaat 2216
>dbj|AK147291.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1008L20 product:adenylate cyclase activating polypeptide 1 receptor 1, full insert sequence Length = 6105 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 1324 cagcacagctctgtggtggg 1343
>dbj|AK147609.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN full-length enriched library, clone:M5C1088G18 product:adenylate cyclase activating polypeptide 1 receptor 1, full insert sequence Length = 5889 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 1114 cagcacagctctgtggtggg 1133
>gb|AC160534.5| Mus musculus chromosome 7, clone RP24-265E12, complete sequence Length = 176921 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 acagctctgtggtgggacca 316 |||||||||||||||||||| Sbjct: 40896 acagctctgtggtgggacca 40877
>dbj|AK042820.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730027C01 product:PITUITARY ADENYLATE CYCLASE ACTIVATING POLYPEPTIDE TYPE I RECEPTOR PRECURSOR (PACAP TYPE I RECEPTOR), full insert sequence Length = 3688 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 1365 cagcacagctctgtggtggg 1384
>dbj|AK081121.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930090H13 product:PITUITARY ADENYLATE CYCLASE ACTIVATING POLYPEPTIDE TYPE I RECEPTOR PRECURSOR (PACAP TYPE I RECEPTOR), full insert sequence Length = 3093 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 876 cagcacagctctgtggtggg 895
>gb|AC102298.14| Mus musculus chromosome 7, clone RP24-396N13, complete sequence Length = 187811 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 acagctctgtggtgggacca 316 |||||||||||||||||||| Sbjct: 109177 acagctctgtggtgggacca 109196
>dbj|AK083108.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:C630015A01 product:PITUITARY ADENYLATE CYCLASE ACTIVATING POLYPEPTIDE TYPE I RECEPTOR PRECURSOR (PACAP TYPE I RECEPTOR), full insert sequence Length = 3459 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 1372 cagcacagctctgtggtggg 1391
>dbj|AK047304.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930047C21 product:PITUITARY ADENYLATE CYCLASE ACTIVATING POLYPEPTIDE TYPE I RECEPTOR PRECURSOR (PACAP TYPE I RECEPTOR), full insert sequence Length = 3093 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 876 cagcacagctctgtggtggg 895
>gb|AC006466.3|AC006466 Homo sapiens BAC clone CTA-471E18 from 7p11.2-p21, complete sequence Length = 156880 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 47166 cagcacagctctgtggtggg 47185
>gb|AE004701.1| Pseudomonas aeruginosa PAO1, section 262 of 529 of the complete genome Length = 10551 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 atcccagtgttgtagaaaat 132 |||||||||||||||||||| Sbjct: 9175 atcccagtgttgtagaaaat 9194
>gb|AC092758.3| Papio anubis clone RP41-22J16, complete sequence Length = 171690 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 47315 cagcacagctctgtggtggg 47334
>gb|AC091657.3| Rattus norvegicus strain Brown Norway clone RP31-29N16, complete sequence Length = 141898 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 66176 cagcacagctctgtggtggg 66195
>emb|BX247879.5| Zebrafish DNA sequence from clone CH211-195N15, complete sequence Length = 184509 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 aaaatgatgtacagatttgt 238 |||||||||||||||||||| Sbjct: 159822 aaaatgatgtacagatttgt 159803
>dbj|AB008268.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSJ1 Length = 83594 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 aaatttggatacaatggaaa 110 |||||||||||||||||||| Sbjct: 25309 aaatttggatacaatggaaa 25290
>emb|Z22735.1|RNPACAPA R.norvegicus PACAP-like receptor mRNA Length = 1370 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 558 cagcacagctctgtggtggg 577
>emb|Z23282.1|RNPACAPAB R.norvegicus PACAP mRNA, complete CDS Length = 2468 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 1293 cagcacagctctgtggtggg 1312
>emb|Z23279.1|RNPACAPAA R.norvegicus PACAP receptor, complete CDS Length = 1640 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 990 cagcacagctctgtggtggg 1009
>emb|Z23275.1|RNPACHOPB R.norvegicus PACAP receptor, hop2 splice variant, complete CDS Length = 1721 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 990 cagcacagctctgtggtggg 1009
>emb|Z23274.1|RNPACHOPA R.norvegicus PACAP receptor, hop1 splice variant, complete CDS Length = 1724 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 990 cagcacagctctgtggtggg 1009
>emb|Z23273.1|RNPACHIPA R.norvegicus PACAP receptor, hip splice variant, complete CDS Length = 1724 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 990 cagcacagctctgtggtggg 1009
>emb|Z23272.1|RNPACHH1A R.norvegicus PACAP receptor, hip-hop1 splice variant, complete CDS Length = 1808 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 990 cagcacagctctgtggtggg 1009
>ref|NM_133511.1| Rattus norvegicus adenylate cyclase activating polypeptide 1 receptor 1 (Adcyap1r1), mRNA Length = 2681 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 1237 cagcacagctctgtggtggg 1256
>dbj|D16465.1|RATRPACAP1 Rattus norvegicus mRNA for PACAP receptor, complete cds Length = 2681 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 1237 cagcacagctctgtggtggg 1256
>dbj|D14909.1|RATPACAP2 Rattus norvegicus mRNA for PACAP receptor, complete cds Length = 2599 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 1027 cagcacagctctgtggtggg 1046
>dbj|D14908.1|RATPACAP1 Rattus norvegicus mRNA for PACAP receptor, complete cds Length = 2122 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 1229 cagcacagctctgtggtggg 1248
>gb|BC067039.1| Mus musculus adenylate cyclase activating polypeptide 1 receptor 1, transcript variant 2, mRNA (cDNA clone MGC:85983 IMAGE:6852762), complete cds Length = 6157 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 1306 cagcacagctctgtggtggg 1325
>emb|CR848815.7| Zebrafish DNA sequence from clone CH211-197C11 in linkage group 15, complete sequence Length = 161902 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 ttacaacgagcatcaaattt 96 |||||||||||||||||||| Sbjct: 117740 ttacaacgagcatcaaattt 117759
>gb|L16680.1|RATPACAPI Rat pituitary adenylate cyclase activating polypeptide (PACAP) type I receptor mRNA, complete cds Length = 1996 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 930 cagcacagctctgtggtggg 949
>dbj|D82935.1| Mus musculus mRNA for pituitary adenylate cyclase-activating polypeptide receptor, complete cds Length = 1644 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 1056 cagcacagctctgtggtggg 1075
>gb|L16506.1|RATPACAPLR Rat PACAP-like receptor mRNA, 3' end Length = 1370 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 558 cagcacagctctgtggtggg 577
>dbj|D17516.1|HUMPACAPR Homo sapiens mRNA for PACAP receptor, complete cds Length = 1664 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 1147 cagcacagctctgtggtggg 1166
>dbj|AB065700.1| Homo sapiens gene for seven transmembrane helix receptor, complete cds, isolate:CBRC7TM_263 Length = 43818 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cagcacagctctgtggtggg 312 |||||||||||||||||||| Sbjct: 24579 cagcacagctctgtggtggg 24598 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,168,657 Number of Sequences: 3902068 Number of extensions: 4168657 Number of successful extensions: 75747 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75681 Number of HSP's gapped (non-prelim): 66 length of query: 388 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 366 effective length of database: 17,147,199,772 effective search space: 6275875116552 effective search space used: 6275875116552 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)