Clone Information

BLAST Search Result

Clone Name	rbah61i11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	THI42_MAIZE (Q41739) Thiazole biosynthetic enzyme 1-2, chloropla...	265	1e-70
2	THI4_CITSI (O23787) Thiazole biosynthetic enzyme, chloroplast pr...	258	2e-68
3	THI41_MAIZE (Q41738) Thiazole biosynthetic enzyme 1-1, chloropla...	257	2e-68
4	THI4_ALNGL (Q38709) Thiazole biosynthetic enzyme, chloroplast pr...	255	1e-67
5	THI4_ARATH (Q38814) Thiazole biosynthetic enzyme, chloroplast pr...	248	1e-65
6	THI4_FUSSH (P23617) Thiazole biosynthetic enzyme, mitochondrial ...	158	1e-38
7	THI4_FUSOX (P23618) Thiazole biosynthetic enzyme, mitochondrial ...	155	1e-37
8	THI4_ASPOR (Q9UUZ9) Thiazole biosynthetic enzyme, mitochondrial ...	148	1e-35
9	THI4_UROFA (Q9UVF8) Thiazole biosynthetic enzyme, mitochondrial ...	147	4e-35
10	THI2_SCHPO (P40998) Thiazole biosynthetic enzyme, mitochondrial ...	147	4e-35
11	THI4_YEAST (P32318) Thiazole biosynthetic enzyme, mitochondrial ...	113	6e-25
12	THI4_AERPE (Q9Y9Z0) Putative thiazole biosynthetic enzyme	89	1e-17
13	THI4_PYRKO (Q5JD25) Putative thiazole biosynthetic enzyme	87	6e-17
14	THI4_PYRFU (Q8U0Q5) Putative thiazole biosynthetic enzyme	86	8e-17
15	THI4_PYRHO (O59082) Putative thiazole biosynthetic enzyme	85	2e-16
16	THI4_PYRAB (Q9V0J8) Putative thiazole biosynthetic enzyme	84	3e-16
17	THI4_HALSA (Q9HMC7) Putative thiazole biosynthetic enzyme	73	9e-13
18	THI4_METMP (Q6LXJ8) Putative thiazole biosynthetic enzyme	72	2e-12
19	THI4_METMA (Q8Q0B5) Putative thiazole biosynthetic enzyme	70	5e-12
20	THI4_METAC (Q8TM19) Putative thiazole biosynthetic enzyme	69	1e-11
21	THI4_THEMA (Q9WZP4) Putative thiazole biosynthetic enzyme	67	5e-11
22	THI4_METTH (O27657) Putative thiazole biosynthetic enzyme	65	1e-10
23	THI4_ARCFU (O29556) Putative thiazole biosynthetic enzyme	64	6e-10
24	THI4_METJA (Q58018) Putative thiazole biosynthetic enzyme	61	4e-09
25	THI4_POPEU (P84548) Thiazole biosynthetic enzyme (Fragments)	54	6e-07
26	RPOB_LEPBI (Q9KK59) DNA-directed RNA polymerase beta chain (EC 2...	35	0.21
27	RPOB_LEPIN (Q8F0S2) DNA-directed RNA polymerase beta chain (EC 2...	35	0.28
28	RPOB_LEPIC (Q72UA8) DNA-directed RNA polymerase beta chain (EC 2...	35	0.28
29	PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain...	32	1.4
30	RPOBC_HELHP (Q7VJ82) Bifunctional DNA-directed RNA polymerase, b...	32	1.8
31	SODC_BRUAB (P15453) Superoxide dismutase [Cu-Zn] precursor (EC 1...	32	2.4
32	SODC_BRUSU (P66827) Superoxide dismutase [Cu-Zn] precursor (EC 1...	32	2.4
33	SODC_BRUME (P66826) Superoxide dismutase [Cu-Zn] precursor (EC 1...	32	2.4
34	GSCL_HUMAN (O15499) Homeobox protein goosecoid-like (GSC-2)	32	2.4
35	SPEN_DROME (Q8SX83) Protein split ends	28	2.7
36	MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac...	31	4.1
37	ARNB_PSEU2 (Q4ZSZ4) UDP-4-amino-4-deoxy-L-arabinose--oxoglutarat...	30	5.3
38	RPOB_BORGA (Q661M9) DNA-directed RNA polymerase beta chain (EC 2...	30	6.9
39	RPOB_BORBU (Q59191) DNA-directed RNA polymerase beta chain (EC 2...	30	6.9
40	YWS4_CAEEL (Q10940) Hypothetical protein B0310.4	30	9.0

>THI42_MAIZE (Q41739) Thiazole biosynthetic enzyme 1-2, chloroplast precursor|
          Length = 354

 Score =  265 bits (677), Expect = 1e-70
 Identities = 131/152 (86%), Positives = 141/152 (92%)
 Frame = -2

Query: 685 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMIQAVPGMKAL 506
           VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMI AVPGMKAL
Sbjct: 204 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKAL 263

Query: 505 DMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGR 326
           DMN AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGR
Sbjct: 264 DMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGR 323

Query: 325 PNGIDGTLKNVTPALHPEMILAATNNADIVDA 230
           PN +DGT+  V+PAL  E ++A+ ++ ++VDA
Sbjct: 324 PNAVDGTIPEVSPALREEFVIASKDD-EVVDA 354

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>THI4_CITSI (O23787) Thiazole biosynthetic enzyme, chloroplast precursor|
          Length = 356

 Score =  258 bits (658), Expect = 2e-68
 Identities = 128/152 (84%), Positives = 139/152 (91%)
 Frame = -2

Query: 685 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMIQAVPGMKAL 506
           VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRL+ IGMI+ VPGMKAL
Sbjct: 208 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKAL 267

Query: 505 DMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGR 326
           DMN+AEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+
Sbjct: 268 DMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 327

Query: 325 PNGIDGTLKNVTPALHPEMILAATNNADIVDA 230
           PN +DGT       +HPE+ILAA ++A+  DA
Sbjct: 328 PNALDGT---YVGGVHPELILAAADSAETADA 356

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>THI41_MAIZE (Q41738) Thiazole biosynthetic enzyme 1-1, chloroplast precursor|
          Length = 354

 Score =  257 bits (657), Expect = 2e-68
 Identities = 130/152 (85%), Positives = 140/152 (92%)
 Frame = -2

Query: 685 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMIQAVPGMKAL 506
           VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMI AVPGMKAL
Sbjct: 207 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKAL 266

Query: 505 DMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGR 326
           DMNTAED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGR
Sbjct: 267 DMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGR 326

Query: 325 PNGIDGTLKNVTPALHPEMILAATNNADIVDA 230
           PN +DGT+   +P L  E+++A  ++ ++VDA
Sbjct: 327 PNAVDGTM---SPPLREELMIAYKDD-EVVDA 354

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>THI4_ALNGL (Q38709) Thiazole biosynthetic enzyme, chloroplast precursor (AG6)|
          Length = 352

 Score =  255 bits (651), Expect = 1e-67
 Identities = 127/152 (83%), Positives = 136/152 (89%)
 Frame = -2

Query: 685 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMIQAVPGMKAL 506
           VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK L+ IGMI  VPGMKAL
Sbjct: 204 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKSLRSIGMIDTVPGMKAL 263

Query: 505 DMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGR 326
           DMN AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALG 
Sbjct: 264 DMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGL 323

Query: 325 PNGIDGTLKNVTPALHPEMILAATNNADIVDA 230
           PN +DG   +    +HPE+ILAA ++A+I DA
Sbjct: 324 PNALDG---SYVGGIHPELILAAADSAEIADA 352

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>THI4_ARATH (Q38814) Thiazole biosynthetic enzyme, chloroplast precursor (ARA6)|
          Length = 349

 Score =  248 bits (633), Expect = 1e-65
 Identities = 126/152 (82%), Positives = 134/152 (88%)
 Frame = -2

Query: 685 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMIQAVPGMKAL 506
           VTNWALV+ NH TQSCMDPNVMEAK+VVSSCGHDGPFGATGVKRL+ IGMI  VPGMKAL
Sbjct: 201 VTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKAL 260

Query: 505 DMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGR 326
           DMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALKALG 
Sbjct: 261 DMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGL 320

Query: 325 PNGIDGTLKNVTPALHPEMILAATNNADIVDA 230
           PN IDGTL      L PE++LAA ++A+ VDA
Sbjct: 321 PNAIDGTL---VGNLSPELVLAAADSAETVDA 349

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>THI4_FUSSH (P23617) Thiazole biosynthetic enzyme, mitochondrial precursor|
           (Stress-inducible protein sti35)
          Length = 324

 Score =  158 bits (400), Expect = 1e-38
 Identities = 76/118 (64%), Positives = 94/118 (79%)
 Frame = -2

Query: 685 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMIQAVPGMKAL 506
           VTNW LVSM+HD QSCMDPN + A +V+S+ GHD P GA  VKRL  +G I+ + GM+ L
Sbjct: 198 VTNWTLVSMHHDDQSCMDPNTINAPLVISTTGHDAPMGAFCVKRLVSMGRIEKLGGMRGL 257

Query: 505 DMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 332
           DMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK +
Sbjct: 258 DMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALKVI 315

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>THI4_FUSOX (P23618) Thiazole biosynthetic enzyme, mitochondrial precursor|
           (Stress-inducible protein sti35)
          Length = 320

 Score =  155 bits (392), Expect = 1e-37
 Identities = 75/116 (64%), Positives = 92/116 (79%)
 Frame = -2

Query: 685 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMIQAVPGMKAL 506
           VTNW LVSM+HD QSCMDPN + A +++S+ GHDGP GA  VKRL  +  I+ + GM+ L
Sbjct: 194 VTNWTLVSMHHDDQSCMDPNTINAPLIISTTGHDGPMGAFCVKRLVSMQRIEKLGGMRGL 253

Query: 505 DMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 338
           DMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct: 254 DMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309

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>THI4_ASPOR (Q9UUZ9) Thiazole biosynthetic enzyme, mitochondrial precursor|
          Length = 327

 Score =  148 bits (374), Expect = 1e-35
 Identities = 70/116 (60%), Positives = 89/116 (76%)
 Frame = -2

Query: 685 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMIQAVPGMKAL 506
           V NW LV+++HD  SCMDPN + A V++S+ GHDGPFGA   KRL  +G +  + GM+ L
Sbjct: 201 VVNWTLVTLHHDDHSCMDPNTINAPVIISTTGHDGPFGAFCAKRLVSMGSVDKLGGMRGL 260

Query: 505 DMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 338
           DMN+AEDAIV+ TREV  G+I+ GME++EIDG  RMGPTFGAM++SG KAA  ALK
Sbjct: 261 DMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALK 316

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>THI4_UROFA (Q9UVF8) Thiazole biosynthetic enzyme, mitochondrial precursor|
          Length = 338

 Score =  147 bits (370), Expect = 4e-35
 Identities = 69/120 (57%), Positives = 91/120 (75%)
 Frame = -2

Query: 685 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMIQAVPGMKAL 506
           VTNW LVS+NHD QSCMDP+ + A +V S  GHDGPFGA  VKR+   G+ + +  M+ L
Sbjct: 206 VTNWTLVSLNHDHQSCMDPSTITAPLVCSFAGHDGPFGAFCVKRVASAGLSEGLGDMRPL 265

Query: 505 DMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGR 326
           DM  AED I   TRE++PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL++L R
Sbjct: 266 DMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDR 325

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>THI2_SCHPO (P40998) Thiazole biosynthetic enzyme, mitochondrial precursor|
          Length = 328

 Score =  147 bits (370), Expect = 4e-35
 Identities = 74/115 (64%), Positives = 85/115 (73%)
 Frame = -2

Query: 685 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMIQAVPGMKAL 506
           VTNW LVS+NH  QSCMDPN + A +VVS+ GHDGPFGA  VKRL    ++  +  M+ L
Sbjct: 200 VTNWTLVSLNHGLQSCMDPNTINAHLVVSATGHDGPFGAFCVKRLASAQLVSNLHDMRPL 259

Query: 505 DMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLAL 341
           DMN AED IV+ TREV PGMIV GME++E DGA RMGPTFG MM SG KAA  AL
Sbjct: 260 DMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEAL 314

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>THI4_YEAST (P32318) Thiazole biosynthetic enzyme, mitochondrial precursor|
          Length = 326

 Score =  113 bits (282), Expect = 6e-25
 Identities = 66/133 (49%), Positives = 77/133 (57%), Gaps = 17/133 (12%)
 Frame = -2

Query: 685 VTNWALVSMNHDTQSCMDPNVMEAK---------------VVVSSCGHDGPFGATGVKRL 551
           VTNW LV+  H TQ CMDPNV+E                 V++S+ GHDGPFGA   KR+
Sbjct: 190 VTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRI 249

Query: 550 QDIGMIQAVPGMKALDMNTAEDAIVRLTREV--VPGMIVTGMEVAEIDGAPRMGPTFGAM 377
            DI   Q + GMK LDMN AE  +V  +     V  M   GMEVAE+DG  RMGPTFGAM
Sbjct: 250 VDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAM 309

Query: 376 MISGQKAAHLALK 338
            +SG  AA   LK
Sbjct: 310 ALSGVHAAEQILK 322

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>THI4_AERPE (Q9Y9Z0) Putative thiazole biosynthetic enzyme|
          Length = 274

 Score = 89.4 bits (220), Expect = 1e-17
 Identities = 50/119 (42%), Positives = 74/119 (62%)
 Frame = -2

Query: 685 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMIQAVPGMKAL 506
           V NW+ V       +C+DP  + A+ VV + GHD    A   ++L + GM++A   +  +
Sbjct: 148 VVNWSPVQGLPRQITCVDPVGLRAEYVVDATGHD----AVVTRKLAERGMVEASK-LGPM 202

Query: 505 DMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALG 329
            +  +ED +V  T EV PG++V G+ VAE+ G PRMGPTFGAM++SG+KAA L  + LG
Sbjct: 203 WVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAMLLSGEKAAALIGEKLG 261

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>THI4_PYRKO (Q5JD25) Putative thiazole biosynthetic enzyme|
          Length = 251

 Score = 86.7 bits (213), Expect = 6e-17
 Identities = 52/120 (43%), Positives = 67/120 (55%)
 Frame = -2

Query: 685 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMIQAVPGMKAL 506
           V NW  V M   T   +DP  +EAK VV S GH        +KR    G+I+A+PG   +
Sbjct: 139 VINWTPVMM---TGLHVDPLTVEAKFVVDSTGHGAQISQHLLKR----GLIKAIPGEGPM 191

Query: 505 DMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGR 326
                E+  V  TREV PG+  TGM    + GAPRMGP FG M++SG+KAA   L+ LG+
Sbjct: 192 WAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMGPIFGGMLLSGRKAALEILQKLGK 251

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>THI4_PYRFU (Q8U0Q5) Putative thiazole biosynthetic enzyme|
          Length = 252

 Score = 86.3 bits (212), Expect = 8e-17
 Identities = 52/119 (43%), Positives = 66/119 (55%)
 Frame = -2

Query: 685 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMIQAVPGMKAL 506
           V NW  V M   T   +DP  +EAK V+ S GH    GA   + L   G+I+ +PG  A+
Sbjct: 140 VINWTPVKM---TGLHVDPLTVEAKYVIDSTGH----GAQVTQFLLKRGLIEKIPGEGAM 192

Query: 505 DMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALG 329
                E   V  T+EV PG+ VTGM    + GAPRMGP FG M +SG+KAA   L+ LG
Sbjct: 193 WAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGRKAAMEILQKLG 251

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>THI4_PYRHO (O59082) Putative thiazole biosynthetic enzyme|
          Length = 255

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 52/118 (44%), Positives = 64/118 (54%)
 Frame = -2

Query: 685 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMIQAVPGMKAL 506
           V NW  V M       +DP  +EAK V+ S GH        VKR    G+++ +PG  A+
Sbjct: 143 VINWTPVLM---AGLHVDPLTIEAKYVIDSTGHGAQVAQFLVKR----GLLKEIPGEGAM 195

Query: 505 DMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 332
                E   V+ TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   LK L
Sbjct: 196 WAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGRKAAQEILKKL 253

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>THI4_PYRAB (Q9V0J8) Putative thiazole biosynthetic enzyme|
          Length = 252

 Score = 84.3 bits (207), Expect = 3e-16
 Identities = 53/118 (44%), Positives = 65/118 (55%)
 Frame = -2

Query: 685 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMIQAVPGMKAL 506
           V NW  V M   T   +DP  +EAK V+ S GH    GA   + L   G+I+ +PG  A+
Sbjct: 140 VINWTPVLM---TGLHVDPLTVEAKYVIDSTGH----GAQVAQFLLKRGLIERIPGEGAM 192

Query: 505 DMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 332
                E   V  TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   L+ L
Sbjct: 193 WAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGKKAAQEILEKL 250

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>THI4_HALSA (Q9HMC7) Putative thiazole biosynthetic enzyme|
          Length = 310

 Score = 72.8 bits (177), Expect = 9e-13
 Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 23/141 (16%)
 Frame = -2

Query: 685 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLQD--I 542
           V NW  V       +C+DP  +EA VVV + GHD          G   A G++ +++   
Sbjct: 150 VVNWTPVHSLPRELTCVDPIALEADVVVDATGHDAVVVSKLHERGVLEADGIEHVEEHAT 209

Query: 541 GMIQA-----------VPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMG 395
           GM Q+            PG  ++ +  +ED +V  T +V  G++  G+  A + G  RMG
Sbjct: 210 GMDQSGDGEYGAPGHDSPGHDSMWVADSEDKVVEQTGKVHDGLVTAGLSTATVHGLTRMG 269

Query: 394 PTFGAMMISGQKAAHLALKAL 332
           PTFGAM++SG+ AA+  +  L
Sbjct: 270 PTFGAMLLSGKVAANAVMDEL 290

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>THI4_METMP (Q6LXJ8) Putative thiazole biosynthetic enzyme|
          Length = 262

 Score = 72.0 bits (175), Expect = 2e-12
 Identities = 40/102 (39%), Positives = 58/102 (56%)
 Frame = -2

Query: 637 MDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREV 458
           +DP  + AK V+ S GHD     T  ++ +D+G+   VPG K++  +  E+++ R TREV
Sbjct: 160 IDPITISAKYVIDSTGHDASVINTLARKNKDLGI--EVPGEKSMWADKGENSLTRNTREV 217

Query: 457 VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 332
            PG+ V GM         RMG  FG M +SG+K A L L+ L
Sbjct: 218 FPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAELILEKL 259

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>THI4_METMA (Q8Q0B5) Putative thiazole biosynthetic enzyme|
          Length = 260

 Score = 70.5 bits (171), Expect = 5e-12
 Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
 Frame = -2

Query: 685 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMIQ-AVPGMKA 509
           V NW  V+     +  +DP ++  K+V+   GHD     T ++++ +  + +  + G K 
Sbjct: 142 VINWGPVTTQ---RLHVDPLMIRTKLVIDGTGHDAVVCNTILRKIPNAKIGEFGILGEKP 198

Query: 508 LDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 332
           +     E   V  T+E+ PG+IV GM       APRMGP FG M++SG+KAA LAL  L
Sbjct: 199 MWSEVGERLAVDATQEIYPGLIVAGMAANAATRAPRMGPVFGGMLLSGEKAAKLALDRL 257

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>THI4_METAC (Q8TM19) Putative thiazole biosynthetic enzyme|
          Length = 260

 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
 Frame = -2

Query: 685 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQD--IGMIQAVPGMK 512
           V NW  V+     +  +DP ++  K+V+   GH+     T ++++ +  IG +  + G K
Sbjct: 142 VINWGPVTTQ---RLHVDPLMIRTKLVIDGTGHEAVVCNTILRKIPNAKIGELGLL-GEK 197

Query: 511 ALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 332
            +     E   V  T+E+ PG+IV GM       APRMGP FG M++SG+KAA LAL  L
Sbjct: 198 PMWSEVGERLAVNATQEIYPGLIVAGMAANAATRAPRMGPVFGGMLLSGEKAAKLALDRL 257

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>THI4_THEMA (Q9WZP4) Putative thiazole biosynthetic enzyme|
          Length = 250

 Score = 67.0 bits (162), Expect = 5e-11
 Identities = 38/102 (37%), Positives = 56/102 (54%)
 Frame = -2

Query: 637 MDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREV 458
           +DP  ++A  VV   GH     A  V  L   G+++       +D + AE  +V  T E+
Sbjct: 153 VDPITVKASFVVDGTGHP----ANVVSLLAKRGLVEMKTEFP-MDADEAEKFVVDNTGEI 207

Query: 457 VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 332
            PG++V+GM V  + G PRMGP FG M++SGQK A +  + L
Sbjct: 208 FPGLLVSGMAVCAVHGGPRMGPIFGGMILSGQKVARIVSERL 249

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>THI4_METTH (O27657) Putative thiazole biosynthetic enzyme|
          Length = 266

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
 Frame = -2

Query: 685 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRL-----QDIGMIQAVP 521
           V NW+ V M       +DP  + A+ V+ + GHD        +++        G IQ   
Sbjct: 149 VLNWSSVEM---AGLHVDPLTVRARAVIDATGHDCEIVKVVERKIGPELNTPDGRIQ--- 202

Query: 520 GMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLAL 341
           G +++  +  E A++  TREV P + V GM    + GAPRMGP FG M++SG++ A + +
Sbjct: 203 GERSMWADVGEAALIENTREVYPNLYVAGMASNAVYGAPRMGPIFGGMLVSGRRVAEMII 262

Query: 340 KAL 332
           + L
Sbjct: 263 EKL 265

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>THI4_ARCFU (O29556) Putative thiazole biosynthetic enzyme|
          Length = 260

 Score = 63.5 bits (153), Expect = 6e-10
 Identities = 34/102 (33%), Positives = 55/102 (53%)
 Frame = -2

Query: 637 MDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREV 458
           +DP  + ++ VV + GHD    +   ++   I +  +V G ++     AE  IV  T ++
Sbjct: 160 VDPLFLRSRAVVDATGHDAEVISVAARK---IPLEVSVVGERSAYSEVAEREIVEKTGKI 216

Query: 457 VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 332
           V G+   GM VA +   PRMGP FG M++SG+K A +  + L
Sbjct: 217 VKGLYAAGMAVAAVHNLPRMGPIFGGMLLSGKKVAEIVAEDL 258

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>THI4_METJA (Q58018) Putative thiazole biosynthetic enzyme|
          Length = 263

 Score = 60.8 bits (146), Expect = 4e-09
 Identities = 37/102 (36%), Positives = 54/102 (52%)
 Frame = -2

Query: 637 MDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREV 458
           +DP  + +KVVV + GH+       VK+ +   +   VPG K++     E+A++R TREV
Sbjct: 161 IDPLTIRSKVVVDATGHEASIVNILVKKNK---LEADVPGEKSMWAEKGENALLRNTREV 217

Query: 457 VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 332
            P + V GM      G  RMG  FG M +SG+  A L  + L
Sbjct: 218 YPNLFVCGMAANASHGGYRMGAIFGGMYLSGKLCAELITEKL 259

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>THI4_POPEU (P84548) Thiazole biosynthetic enzyme (Fragments)|
          Length = 48

 Score = 53.5 bits (127), Expect = 6e-07
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = -2

Query: 493 AEDAIVRLTREVVPGMIVTGMEVAEIDGAPR 401
           AED IV+  RE+VPGMIVTGMEVAEIDGAPR
Sbjct: 18  AEDLIVKGGREIVPGMIVTGMEVAEIDGAPR 48

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>RPOB_LEPBI (Q9KK59) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1228

 Score = 35.0 bits (79), Expect = 0.21
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = -2

Query: 490  EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM-MISGQKAAHLALKALGRPNGI 314
            E  ++R+  EV PG I+ GM   +  G   + P +  +  I G+KA  +   +L  PNG 
Sbjct: 878  ESGVIRVGAEVKPGDILVGMVTPK--GETDLTPEYKLLHSIFGEKAKEVRDSSLRMPNGF 935

Query: 313  DGTLKNV 293
            +GT+ ++
Sbjct: 936  EGTVIDI 942

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>RPOB_LEPIN (Q8F0S2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1226

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = -2

Query: 490  EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM-MISGQKAAHLALKALGRPNGI 314
            E  ++R+  EV PG I+ GM   +  G   + P +  +  I G+KA  +   +L  PNG 
Sbjct: 876  ETGVIRIGAEVKPGDILVGMVTPK--GETDLTPEYKLLHSIFGEKAKDVRDSSLRMPNGF 933

Query: 313  DGTLKNV 293
            +GT+ ++
Sbjct: 934  EGTVIDI 940

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>RPOB_LEPIC (Q72UA8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1226

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = -2

Query: 490  EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM-MISGQKAAHLALKALGRPNGI 314
            E  ++R+  EV PG I+ GM   +  G   + P +  +  I G+KA  +   +L  PNG 
Sbjct: 876  ETGVIRIGAEVKPGDILVGMVTPK--GETDLTPEYKLLHSIFGEKAKDVRDSSLRMPNGF 933

Query: 313  DGTLKNV 293
            +GT+ ++
Sbjct: 934  EGTVIDI 940

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>PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain-containing|
            protein 2) (Activated in prostate cancer protein)
          Length = 2839

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
 Frame = +2

Query: 383  AEGRAHSRGTVDLGDLHAGDNHARDDLAGEAHDGVLGRVHVKRLHPGHRLDHADVLEPLD 562
            ++G A   GT++ GD     N A   LAG AH  VL  +H  +LH    +     ++   
Sbjct: 2655 SQGAASQEGTMNRGDFLLSVNGA--SLAGLAHGNVLKVLHQAQLHKDALVVIKKGMDQPR 2712

Query: 563  PGGTEGPVVAAG----AHHDLGL-----HDVGVHAGLCVVV 658
            P   + P  A G    +   + L       V VH  LCV V
Sbjct: 2713 PSARQEPPTANGKGLLSRKTIPLEPGIGRSVAVHDALCVEV 2753

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>RPOBC_HELHP (Q7VJ82) Bifunctional DNA-directed RNA polymerase, beta and beta'|
            chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase
            beta chain (Transcriptase beta chain) (RNA polymerase
            beta subunit); DNA-directed RNA polymerase beta' chain
            (Transcri
          Length = 2894

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
 Frame = -2

Query: 526  VPGMKALDM-NTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMM---ISGQK 359
            +PG K  +  +  E  IVR+   V  GMI+ G    ++     + PT    +   I G+K
Sbjct: 865  IPGTKEAETAHLDESGIVRIGTYVSAGMILVG----KVSPKGEVKPTPEERLLRAIFGEK 920

Query: 358  AAHLALKALGRPNGIDGTLKNV 293
            A H+  K+L  P  ++GT+ +V
Sbjct: 921  AGHVVNKSLYCPPSLEGTVVDV 942

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>SODC_BRUAB (P15453) Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)|
          Length = 173

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 470 EAHDGVLGRVHVKRLHPGHRLDHADVLEPLDPGGTEG---PVVAAGAHHDLG 616
           EA  G+  +V++++L PG+   H        PG  +G   P +AAG H+D G
Sbjct: 45  EAPGGLHFKVNMEKLTPGYHGFHVHENPSCAPGEKDGKIVPALAAGGHYDPG 96

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>SODC_BRUSU (P66827) Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)|
          Length = 174

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 470 EAHDGVLGRVHVKRLHPGHRLDHADVLEPLDPGGTEG---PVVAAGAHHDLG 616
           EA  G+  +V++++L PG+   H        PG  +G   P +AAG H+D G
Sbjct: 46  EAPGGLHFKVNMEKLTPGYHGFHVHENPSCAPGEKDGKIVPALAAGGHYDPG 97

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>SODC_BRUME (P66826) Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)|
          Length = 174

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 470 EAHDGVLGRVHVKRLHPGHRLDHADVLEPLDPGGTEG---PVVAAGAHHDLG 616
           EA  G+  +V++++L PG+   H        PG  +G   P +AAG H+D G
Sbjct: 46  EAPGGLHFKVNMEKLTPGYHGFHVHENPSCAPGEKDGKIVPALAAGGHYDPG 97

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>GSCL_HUMAN (O15499) Homeobox protein goosecoid-like (GSC-2)|
          Length = 205

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +3

Query: 318 PFGRPRA---LSARCAAFWPEIIMAPKVGPILGAPSISATSMPVTIMPGTTSRVRR 476
           P G P A   L AR A  WP + + P V   LGAP+  + ++P  + PG+  R RR
Sbjct: 76  PCGPPEAAAGLGARLA--WP-LRLGPAVPLSLGAPAGGSGALPGAVGPGSQRRTRR 128

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>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 28.1 bits (61), Expect(2) = 2.7
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = -2

Query: 523  PGMKALDMNTAE-------DAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMIS 368
            PG KA+DM   E        A+V+  +E +P  +  GME+A     P M P  G  +++
Sbjct: 5338 PG-KAMDMQLDEMDRMSMIAAVVQQQQEHLPPALPAGMELASQQAPPAMAPPPGDSLVT 5395



 Score = 21.6 bits (44), Expect(2) = 2.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -1

Query: 563  GQAAPGHRHDPGGARD 516
            G   PG  H PG A D
Sbjct: 5328 GSVQPGSHHHPGKAMD 5343

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>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 16/64 (25%), Positives = 23/64 (35%)
 Frame = +3

Query: 396  PILGAPSISATSMPVTIMPGTTSRVRRTXXXXXXXXXXXXIPGTAWIMPMSWSRLTPVAP 575
            P+    +I  +S P T    T    + T             PGT WI+    +  T  A 
Sbjct: 4286 PVATMSTIHPSSTPETTHTSTVLTTKATTRATSSTSTPSSTPGTTWILTELTTAATTTAG 4345

Query: 576  KGPS 587
             GP+
Sbjct: 4346 TGPT 4349

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>ARNB_PSEU2 (Q4ZSZ4) UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate|
           aminotransferase (EC 2.6.1.-)
           (UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate)
           aminotransferase) (UDP-Ara4O aminotransferase)
           (Polymyxin resistance protein pmrH)
          Length = 382

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -2

Query: 490 EDAIVRLTREVVPGMIVTGMEVAEIDG--APRMGPTFGAMMISGQKAAHLALKALG 329
           ++ I  +TR +  G I TG E  +++   A R+G      + S   A H+AL ALG
Sbjct: 15  DEEIAAVTRVLRSGWITTGPECQKLEEEFAARVGARHAVALSSATGAMHVALLALG 70

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>RPOB_BORGA (Q661M9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1155

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = -2

Query: 490  EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMM-ISGQKAAHLALKALGRPNGI 314
            E+ I+R+   V PG I+ G    + +G   + P F  +  I G+KA  +   +L  P+G 
Sbjct: 816  ENGIIRIGTYVKPGDILVGKVTPKSEGD--ITPEFRLLTSIFGEKAKDVKNNSLKVPHGT 873

Query: 313  DGTLKNV 293
            +GT+ +V
Sbjct: 874  EGTVIDV 880

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>RPOB_BORBU (Q59191) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1155

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = -2

Query: 490  EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMM-ISGQKAAHLALKALGRPNGI 314
            E+ I+R+   V PG I+ G    + +G   + P F  +  I G+KA  +   +L  P+G 
Sbjct: 816  ENGIIRIGTYVKPGDILVGKVTPKSEGD--ITPEFRLLTSIFGEKAKDVKNNSLKVPHGT 873

Query: 313  DGTLKNV 293
            +GT+ +V
Sbjct: 874  EGTVIDV 880

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>YWS4_CAEEL (Q10940) Hypothetical protein B0310.4|
          Length = 112

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
 Frame = +2

Query: 368 GDHHGAE---GRAHSRGTVDLGDLHAGDNHARDDLAGEAHDGVL--GRVHVKRLHPG 523
           G+ H  E   G  H RG    G+ H G+ H  +   GE H G    G+ H    H G
Sbjct: 18  GETHRGETHRGETH-RGKTHRGETHRGETHRGETHRGETHRGETHRGKTHRGETHRG 73


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,052,844
Number of Sequences: 219361
Number of extensions: 1663166
Number of successful extensions: 5871
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 5599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5839
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result