Clone Name | rbah61i10 |
---|---|
Clone Library Name | barley_pub |
>gb|BT017795.1| Zea mays clone EL01N0505B10.c mRNA sequence Length = 1184 Score = 178 bits (90), Expect = 1e-41 Identities = 171/198 (86%) Strand = Plus / Minus Query: 426 atcatgtggttggtctggtcatagtagatagaccccggcctcccatgggaaccataccag 485 |||||||||||||||||||||| || || ||||||||||||||||||||| |||| ||| Sbjct: 558 atcatgtggttggtctggtcattgttgaaagaccccggcctcccatgggagccatgccat 499 Query: 486 gaagccccagctcaggctcatcatcattcacttcttcaccagattcggcgccagcaatcc 545 |||| ||| ||| ||||||||||||| |||||||||||||| ||||||||||| | Sbjct: 498 gaagatccacatcaagctcatcatcatttgtatcttcaccagattcagcgccagcaattc 439 Query: 546 caatgcaggcaaatagagaggaatcgtcaactttcaagtgctcgtatgcaagatataagt 605 ||||||| ||||| | ||| |||||||||||||||| ||||| ||||||||||| | | Sbjct: 438 caatgcaagcaaacaaagaagaatcgtcaactttcagatgctcatatgcaagatacagat 379 Query: 606 cctcaattgtggcacttt 623 |||||||||||||||||| Sbjct: 378 cctcaattgtggcacttt 361
>gb|AY109557.1| Zea mays CL38845_1 mRNA sequence Length = 964 Score = 157 bits (79), Expect = 5e-35 Identities = 148/171 (86%) Strand = Plus / Plus Query: 426 atcatgtggttggtctggtcatagtagatagaccccggcctcccatgggaaccataccag 485 |||||||||||||||||||||| || || ||||||||||||||||||||| |||| ||| Sbjct: 621 atcatgtggttggtctggtcattgttgaaagaccccggcctcccatgggacccatgccat 680 Query: 486 gaagccccagctcaggctcatcatcattcacttcttcaccagattcggcgccagcaatcc 545 |||| ||| |||||||| ||||| || |||||||||||||| ||||||||||||| Sbjct: 681 gaagatccacatcaggctcgtcatcgtttgtatcttcaccagattcagcgccagcaatcc 740 Query: 546 caatgcaggcaaatagagaggaatcgtcaactttcaagtgctcgtatgcaa 596 ||||||| ||||| | ||| |||||||||||||||| |||||| ||||||| Sbjct: 741 caatgcaagcaaacaaagaagaatcgtcaactttcaggtgctcatatgcaa 791
>dbj|AK066566.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073O18, full insert sequence Length = 3520 Score = 147 bits (74), Expect = 5e-32 Identities = 170/202 (84%) Strand = Plus / Minus Query: 422 agaaatcatgtggttggtctggtcatagtagatagaccccggcctcccatgggaaccata 481 |||||||||||||||||||||||||| || |||||||| |||||||| || ||| |||| Sbjct: 3029 agaaatcatgtggttggtctggtcattgttgatagaccacggcctccaataggacccatg 2970 Query: 482 ccaggaagccccagctcaggctcatcatcattcacttcttcaccagattcggcgccagca 541 ||| | || |||| || ||||||||||| || ||||| |||||||| || |||||| Sbjct: 2969 ccatgcaggcccatatcgagctcatcatcagtcgtctcttcgccagattcagcaccagca 2910 Query: 542 atcccaatgcaggcaaatagagaggaatcgtcaactttcaagtgctcgtatgcaagatat 601 ||||||||||| ||||| | ||| || || |||||||| | |||||| ||||||||||| Sbjct: 2909 atcccaatgcaagcaaacaaagaagattcatcaacttttaggtgctcatatgcaagatac 2850 Query: 602 aagtcctcaattgtggcacttt 623 ||||||||||| |||||||||| Sbjct: 2849 aagtcctcaatcgtggcacttt 2828
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 99.6 bits (50), Expect = 1e-17 Identities = 92/106 (86%) Strand = Plus / Plus Query: 518 tcttcaccagattcggcgccagcaatcccaatgcaggcaaatagagaggaatcgtcaact 577 ||||| |||||||| || ||||||||||||||||| ||||| | ||| || || |||||| Sbjct: 24817555 tcttcgccagattcagcaccagcaatcccaatgcaagcaaacaaagaagattcatcaact 24817614 Query: 578 ttcaagtgctcgtatgcaagatataagtcctcaattgtggcacttt 623 || | |||||| ||||||||||| ||||||||||| |||||||||| Sbjct: 24817615 tttaggtgctcatatgcaagatacaagtcctcaatcgtggcacttt 24817660 Score = 69.9 bits (35), Expect = 9e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 422 agaaatcatgtggttggtctggtcatagtagatagaccccggcctcc 468 |||||||||||||||||||||||||| || |||||||| |||||||| Sbjct: 24817263 agaaatcatgtggttggtctggtcattgttgatagaccacggcctcc 24817309
>dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0072A21 Length = 158287 Score = 99.6 bits (50), Expect = 1e-17 Identities = 92/106 (86%) Strand = Plus / Plus Query: 518 tcttcaccagattcggcgccagcaatcccaatgcaggcaaatagagaggaatcgtcaact 577 ||||| |||||||| || ||||||||||||||||| ||||| | ||| || || |||||| Sbjct: 28638 tcttcgccagattcagcaccagcaatcccaatgcaagcaaacaaagaagattcatcaact 28697 Query: 578 ttcaagtgctcgtatgcaagatataagtcctcaattgtggcacttt 623 || | |||||| ||||||||||| ||||||||||| |||||||||| Sbjct: 28698 tttaggtgctcatatgcaagatacaagtcctcaatcgtggcacttt 28743 Score = 69.9 bits (35), Expect = 9e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 422 agaaatcatgtggttggtctggtcatagtagatagaccccggcctcc 468 |||||||||||||||||||||||||| || |||||||| |||||||| Sbjct: 28346 agaaatcatgtggttggtctggtcattgttgatagaccacggcctcc 28392
>dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0029G06 Length = 169711 Score = 99.6 bits (50), Expect = 1e-17 Identities = 92/106 (86%) Strand = Plus / Plus Query: 518 tcttcaccagattcggcgccagcaatcccaatgcaggcaaatagagaggaatcgtcaact 577 ||||| |||||||| || ||||||||||||||||| ||||| | ||| || || |||||| Sbjct: 151236 tcttcgccagattcagcaccagcaatcccaatgcaagcaaacaaagaagattcatcaact 151295 Query: 578 ttcaagtgctcgtatgcaagatataagtcctcaattgtggcacttt 623 || | |||||| ||||||||||| ||||||||||| |||||||||| Sbjct: 151296 tttaggtgctcatatgcaagatacaagtcctcaatcgtggcacttt 151341 Score = 69.9 bits (35), Expect = 9e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 422 agaaatcatgtggttggtctggtcatagtagatagaccccggcctcc 468 |||||||||||||||||||||||||| || |||||||| |||||||| Sbjct: 150944 agaaatcatgtggttggtctggtcattgttgatagaccacggcctcc 150990
>gb|AC125116.4| Mus musculus BAC clone RP24-261C22 from chromosome 16, complete sequence Length = 180726 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 117 ctcaaagaatccctagttacaagttacaaca 147 |||||||| |||| ||||||||||||||||| Sbjct: 68524 ctcaaagattccccagttacaagttacaaca 68554
>gb|AC154043.1| Drosophila melanogaster clone BACR39O11, complete sequence Length = 182468 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 378 ggagctatgttgataccttgaa 399 |||||||||||||||||||||| Sbjct: 133231 ggagctatgttgataccttgaa 133252
>gb|AC093958.2| Drosophila melanogaster 3L BAC RP98-48M7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174373 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 378 ggagctatgttgataccttgaa 399 |||||||||||||||||||||| Sbjct: 140959 ggagctatgttgataccttgaa 140938
>gb|AE003480.4| Drosophila melanogaster chromosome 3L, section 14 of 83 of the complete sequence Length = 311933 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 378 ggagctatgttgataccttgaa 399 |||||||||||||||||||||| Sbjct: 238757 ggagctatgttgataccttgaa 238736
>gb|AC124225.13| Mus musculus chromosome 16, clone RP23-83P23, complete sequence Length = 157891 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 152 aggaacctgcaagaatcaaatc 173 |||||||||||||||||||||| Sbjct: 103015 aggaacctgcaagaatcaaatc 103036
>gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0017D10, complete sequence Length = 149870 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 gttacaagttacaacaaccga 152 ||||||||||||||||||||| Sbjct: 91915 gttacaagttacaacaaccga 91935
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 gttacaagttacaacaaccga 152 ||||||||||||||||||||| Sbjct: 20093590 gttacaagttacaacaaccga 20093610
>ref|NM_102773.2| Arabidopsis thaliana unknown protein AT1G30360 mRNA, complete cds Length = 2600 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 agttacaagttacaacaacc 150 |||||||||||||||||||| Sbjct: 2542 agttacaagttacaacaacc 2523
>gb|AC101924.24| Mus musculus chromosome 1, clone RP24-391B5, complete sequence Length = 161617 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 atagaaatcatgtggttggt 439 |||||||||||||||||||| Sbjct: 159036 atagaaatcatgtggttggt 159055
>gb|AY763328.1| Oreochromis niloticus clone NTSII40.5 nontranscribed intergenic spacer, partial sequence Length = 157 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 546 caatgcaggcaaatagagaggaat 569 ||||||||||||| |||||||||| Sbjct: 94 caatgcaggcaaacagagaggaat 117
>emb|BX323876.21| Zebrafish DNA sequence from clone CH211-215J19 in linkage group 8, complete sequence Length = 218043 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aaataaaatgcaaccaccaa 266 |||||||||||||||||||| Sbjct: 61750 aaataaaatgcaaccaccaa 61731
>emb|Z81143.1|CEZK265 Caenorhabditis elegans Cosmid ZK265, complete sequence Length = 36069 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ttacaacaaccgaggaacct 159 |||||||||||||||||||| Sbjct: 29767 ttacaacaaccgaggaacct 29786
>gb|AC125106.3| Mus musculus BAC clone RP24-221A9 from chromosome 9, complete sequence Length = 159785 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 caataaagatcccctcttca 377 |||||||||||||||||||| Sbjct: 105253 caataaagatcccctcttca 105234
>gb|AC124743.5| Mus musculus BAC clone RP23-219C1 from 1, complete sequence Length = 220167 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 atagaaatcatgtggttggt 439 |||||||||||||||||||| Sbjct: 88714 atagaaatcatgtggttggt 88733
>gb|AY035092.1| Arabidopsis thaliana unknown protein (At1g30360) mRNA, complete cds Length = 2416 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 agttacaagttacaacaacc 150 |||||||||||||||||||| Sbjct: 2359 agttacaagttacaacaacc 2340
>gb|AC161482.6| Mus musculus chromosome 1, clone RP23-415K20, complete sequence Length = 190103 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 246 aaaataaaatgcaaccaccaagct 269 |||||||||||||||||| ||||| Sbjct: 46506 aaaataaaatgcaaccacaaagct 46483
>emb|AL161552.2|ATCHRIV52 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 52 Length = 198427 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 agttacaagttacaacaacc 150 |||||||||||||||||||| Sbjct: 102694 agttacaagttacaacaacc 102713
>emb|AL022224.1|ATF1C12 Arabidopsis thaliana DNA chromosome 4, BAC clone F1C12 (ESSA project) Length = 111945 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 agttacaagttacaacaacc 150 |||||||||||||||||||| Sbjct: 35271 agttacaagttacaacaacc 35290
>emb|BX548071.7| Zebrafish DNA sequence from clone DKEY-25L23 in linkage group 9, complete sequence Length = 223099 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 tgtcatcctaccttcttcaa 112 |||||||||||||||||||| Sbjct: 83738 tgtcatcctaccttcttcaa 83719
>emb|BX682557.11| Zebrafish DNA sequence from clone DKEY-288D17 in linkage group 3, complete sequence Length = 103591 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aaataaaatgcaaccaccaa 266 |||||||||||||||||||| Sbjct: 83948 aaataaaatgcaaccaccaa 83929
>gb|AC012215.11| Homo sapiens chromosome , clone RP11-345N15, complete sequence Length = 210723 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 acaatgacctgtgctactta 54 |||||||||||||||||||| Sbjct: 96067 acaatgacctgtgctactta 96048
>gb|AC083838.6| Homo sapiens chromosome 8, clone RP11-42L4, complete sequence Length = 156623 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 acaatgacctgtgctactta 54 |||||||||||||||||||| Sbjct: 25421 acaatgacctgtgctactta 25402
>dbj|AK221977.1| Arabidopsis thaliana mRNA for ERD4 protein, partial cds, clone: RAFL22-58-C09 Length = 801 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 agttacaagttacaacaacc 150 |||||||||||||||||||| Sbjct: 752 agttacaagttacaacaacc 733
>ref|NM_059848.3| Caenorhabditis elegans ZK265.7 (ZK265.7) mRNA, complete cds Length = 1386 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ttacaacaaccgaggaacct 159 |||||||||||||||||||| Sbjct: 416 ttacaacaaccgaggaacct 435
>gb|AC129342.5| Rattus norvegicus BAC CH230-229B21 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 224257 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 tcatcatcattcacttcttc 522 |||||||||||||||||||| Sbjct: 173145 tcatcatcattcacttcttc 173164
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 agtgattgattctctactgt 95 |||||||||||||||||||| Sbjct: 35173952 agtgattgattctctactgt 35173933
>gb|AC025295.7|AC025295 Arabidopsis thaliana chromosome 1 BAC T4K22 genomic sequence, complete sequence Length = 82281 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 agttacaagttacaacaacc 150 |||||||||||||||||||| Sbjct: 37948 agttacaagttacaacaacc 37967
>dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0031D02 Length = 183692 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 agtgattgattctctactgt 95 |||||||||||||||||||| Sbjct: 53036 agtgattgattctctactgt 53017
>gb|AF272705.1|F4I4 Arabidopsis thaliana BAC F4I4 Length = 145744 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 ttctccaagaaaataaaatg 256 |||||||||||||||||||| Sbjct: 50282 ttctccaagaaaataaaatg 50263
>dbj|AB039928.1| Arabidopsis thaliana mRNA for ERD4 protein, partial cds Length = 2099 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 agttacaagttacaacaacc 150 |||||||||||||||||||| Sbjct: 2062 agttacaagttacaacaacc 2043
>emb|CR812923.9| Zebrafish DNA sequence from clone DKEY-13G7 in linkage group 11, complete sequence Length = 146997 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 aaataaaatgcaaccaccaa 266 |||||||||||||||||||| Sbjct: 101485 aaataaaatgcaaccaccaa 101466
>gb|AC146299.5| Mus musculus BAC clone RP23-72A20 from 9, complete sequence Length = 166132 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 caataaagatcccctcttca 377 |||||||||||||||||||| Sbjct: 38302 caataaagatcccctcttca 38283
>gb|AC159189.2| Mus musculus BAC clone RP24-159L17 from chromosome 6, complete sequence Length = 160884 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 tctggtcatagtagatagac 458 |||||||||||||||||||| Sbjct: 110122 tctggtcatagtagatagac 110103 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,714,192 Number of Sequences: 3902068 Number of extensions: 5714192 Number of successful extensions: 103067 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102890 Number of HSP's gapped (non-prelim): 174 length of query: 623 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 600 effective length of database: 17,143,297,704 effective search space: 10285978622400 effective search space used: 10285978622400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)