ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61i08 |
|---|---|
| Clone Library Name | barley_pub |
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 111 bits (277), Expect = 9e-25 Identities = 53/68 (77%), Positives = 62/68 (91%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD+RL +LFSEHGKVV ARVVYDR+TGRSRGFGFVTMAS+ E+ DAIA LDGQSL+GR Sbjct: 241 IDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRT 300 Query: 265 LRVNVAEE 242 +RVNVAE+ Sbjct: 301 IRVNVAED 308 Score = 60.5 bits (145), Expect = 2e-09 Identities = 31/66 (46%), Positives = 41/66 (62%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VD L LF + G V A V+Y+RDT +SRGFGFVTM++ EE + A+ + + GR Sbjct: 147 VDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRL 206 Query: 265 LRVNVA 248 L VN A Sbjct: 207 LTVNKA 212
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 110 bits (275), Expect = 2e-24 Identities = 53/68 (77%), Positives = 64/68 (94%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VD+ RL +LFSEHGKVV+ARVVYDR+TGRSRGFGFVTM+ +EL++AI+ALDGQ+LEGRA Sbjct: 255 VDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRA 314 Query: 265 LRVNVAEE 242 +RVNVAEE Sbjct: 315 IRVNVAEE 322 Score = 58.5 bits (140), Expect = 7e-09 Identities = 30/66 (45%), Positives = 41/66 (62%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V+ L LF + G V A V+Y+R+T +SRGFGFVTM+S +E + A+ + L GR Sbjct: 161 VNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRL 220 Query: 265 LRVNVA 248 L VN A Sbjct: 221 LTVNKA 226
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 109 bits (272), Expect = 4e-24 Identities = 54/68 (79%), Positives = 63/68 (92%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VD SRL +LFSEHGKVV ARVV DR+TGRSRGFGFVTM+S+ E++DAIAALDGQ+L+GRA Sbjct: 160 VDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRA 219 Query: 265 LRVNVAEE 242 +RVNVAEE Sbjct: 220 VRVNVAEE 227 Score = 65.5 bits (158), Expect = 6e-11 Identities = 32/66 (48%), Positives = 44/66 (66%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VD +L +F G V A V+Y+R+T RSRGFGFVTM++ EE + A+ L+G ++GR Sbjct: 66 VDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQ 125 Query: 265 LRVNVA 248 L VN A Sbjct: 126 LTVNKA 131
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 102 bits (255), Expect = 3e-22 Identities = 47/68 (69%), Positives = 61/68 (89%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD+RL ++FSEHGKVV ARVV+DR++GRSRGFGFVTM+S+ E+ +AIA LDGQ+L+GR Sbjct: 202 IDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRT 261 Query: 265 LRVNVAEE 242 +RVN AEE Sbjct: 262 IRVNAAEE 269 Score = 63.2 bits (152), Expect = 3e-10 Identities = 32/66 (48%), Positives = 41/66 (62%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +D L +LF + G V A V+Y+R+T RSRGFGFVTM++ EE D A+ L GR Sbjct: 108 IDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRL 167 Query: 265 LRVNVA 248 L VN A Sbjct: 168 LTVNKA 173
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 92.8 bits (229), Expect = 3e-19 Identities = 45/68 (66%), Positives = 57/68 (83%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VDD L ELFSE G VVDA+VVYDRD+GRSRGFGFVT +S +E++DAI +L+G L+GR+ Sbjct: 218 VDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRS 277 Query: 265 LRVNVAEE 242 +RV+ AEE Sbjct: 278 IRVSAAEE 285 Score = 66.6 bits (161), Expect = 3e-11 Identities = 32/64 (50%), Positives = 44/64 (68%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VD + L LF G V V+YD+ TGRSRGFGFVTM+++EE++ A +G ++GRA Sbjct: 98 VDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRA 157 Query: 265 LRVN 254 +RVN Sbjct: 158 IRVN 161
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 92.0 bits (227), Expect = 6e-19 Identities = 45/68 (66%), Positives = 57/68 (83%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VDD L ELFSE G VVDA+VVYDRD+GRSRGFGFVT +S +E++DAI +L+G L+GR+ Sbjct: 219 VDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRS 278 Query: 265 LRVNVAEE 242 +RV+ AEE Sbjct: 279 IRVSAAEE 286 Score = 65.1 bits (157), Expect = 8e-11 Identities = 31/64 (48%), Positives = 44/64 (68%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VD + L LF G V V+YD+ +GRSRGFGFVTM+++EE++ A +G ++GRA Sbjct: 99 VDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRA 158 Query: 265 LRVN 254 +RVN Sbjct: 159 IRVN 162
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 90.1 bits (222), Expect = 2e-18 Identities = 45/67 (67%), Positives = 54/67 (80%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VD L LFSE GKVVDA+VVYDRD+GRSRGFGFVT +S EE+++AI +LDG L GRA Sbjct: 199 VDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRA 258 Query: 265 LRVNVAE 245 +RV+ AE Sbjct: 259 IRVSPAE 265 Score = 71.2 bits (173), Expect = 1e-12 Identities = 35/63 (55%), Positives = 44/63 (69%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 D + L ELF G V V+YD+ TGRSRGFGFVTM+S+EE++ A +G L+GRAL Sbjct: 99 DSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRAL 158 Query: 262 RVN 254 RVN Sbjct: 159 RVN 161
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 90.1 bits (222), Expect = 2e-18 Identities = 45/67 (67%), Positives = 54/67 (80%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VD L LFSE GKVVDA+VVYDRD+GRSRGFGFVT +S EE+++AI +LDG L GRA Sbjct: 205 VDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRA 264 Query: 265 LRVNVAE 245 +RV+ AE Sbjct: 265 IRVSPAE 271 Score = 71.2 bits (173), Expect = 1e-12 Identities = 35/63 (55%), Positives = 44/63 (69%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 D + L ELF G V V+YD+ TGRSRGFGFVTM+S+EE++ A +G L+GRAL Sbjct: 99 DSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRAL 158 Query: 262 RVN 254 RVN Sbjct: 159 RVN 161
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 87.4 bits (215), Expect = 1e-17 Identities = 42/67 (62%), Positives = 53/67 (79%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VDD L LFSE GKVV+ARV+YDRD+GRS+GFGFVT S +E+ +AI +LDG L+GR Sbjct: 215 VDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQ 274 Query: 265 LRVNVAE 245 +RV+ AE Sbjct: 275 IRVSEAE 281 Score = 67.8 bits (164), Expect = 1e-11 Identities = 33/64 (51%), Positives = 43/64 (67%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VD ++L +LF G V V+YD+ TGRSRGFGFVTM+S E++ A +G L+GR Sbjct: 102 VDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRP 161 Query: 265 LRVN 254 LRVN Sbjct: 162 LRVN 165
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 85.5 bits (210), Expect = 5e-17 Identities = 40/67 (59%), Positives = 54/67 (80%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VDD L LF+E GKVV+ARV+YDRD+GRS+GFGFVT++S +E+ AI +L+G L+GR Sbjct: 268 VDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQ 327 Query: 265 LRVNVAE 245 +RV+ AE Sbjct: 328 IRVSEAE 334 Score = 66.2 bits (160), Expect = 3e-11 Identities = 32/64 (50%), Positives = 42/64 (65%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VD ++L +LF G V V+YD+ TGRSRGFGFVTM++ E++ A +G EGR Sbjct: 110 VDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRP 169 Query: 265 LRVN 254 LRVN Sbjct: 170 LRVN 173
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 75.1 bits (183), Expect = 7e-14 Identities = 32/66 (48%), Positives = 50/66 (75%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 DD L FS++G+V+D++++ DR+TGRSRGFGFVT ++ + DAI ++GQ L+GR++ Sbjct: 20 DDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSI 79 Query: 262 RVNVAE 245 VN A+ Sbjct: 80 TVNEAQ 85
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 73.6 bits (179), Expect = 2e-13 Identities = 31/66 (46%), Positives = 49/66 (74%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 DD L F+++G V+D++++ DR+TGRSRGFGFVT ++ + DAI ++GQ L+GR++ Sbjct: 20 DDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSI 79 Query: 262 RVNVAE 245 VN A+ Sbjct: 80 TVNEAQ 85
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 72.4 bits (176), Expect = 5e-13 Identities = 31/66 (46%), Positives = 49/66 (74%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 D+ L FS+ G++VD++++ DR+TGRSRGFGFVT ++ + DAI ++GQ L+GR++ Sbjct: 20 DERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSI 79 Query: 262 RVNVAE 245 VN A+ Sbjct: 80 TVNEAQ 85
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 71.2 bits (173), Expect = 1e-12 Identities = 30/65 (46%), Positives = 48/65 (73%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 D+ L FS+ G+V+D++++ DR+TGRSRGFGFVT ++ + DAI ++G+ L+GR + Sbjct: 19 DAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTIT 78 Query: 259 VNVAE 245 VN A+ Sbjct: 79 VNEAQ 83
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 70.5 bits (171), Expect = 2e-12 Identities = 30/66 (45%), Positives = 47/66 (71%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 +D L + FS+ G + D++++ DR+TGRSRGFGFVT ++ + DAI ++GQ L+GR + Sbjct: 18 NDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNI 77 Query: 262 RVNVAE 245 VN A+ Sbjct: 78 TVNEAQ 83
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 68.9 bits (167), Expect = 5e-12 Identities = 33/67 (49%), Positives = 45/67 (67%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 DD+ L + F+ G VVDA+V+ DR+TGRSRGFGFV + AI+ +DG+ L GR + Sbjct: 47 DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 Query: 262 RVNVAEE 242 RVN A + Sbjct: 107 RVNPAND 113
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 68.9 bits (167), Expect = 5e-12 Identities = 30/66 (45%), Positives = 50/66 (75%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 ++ L + F+ G+V+D++V+ DR+TGRSRGFGFVT +S++ + DAI ++G+ L+GR + Sbjct: 20 NNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNI 79 Query: 262 RVNVAE 245 VN A+ Sbjct: 80 TVNQAQ 85
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 67.8 bits (164), Expect = 1e-11 Identities = 29/66 (43%), Positives = 47/66 (71%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 +D L FS+ G V+D++++ DR++GRSRGFGFVT ++ + DAI ++G+ L+GR + Sbjct: 18 NDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVI 77 Query: 262 RVNVAE 245 VN A+ Sbjct: 78 TVNEAQ 83
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 67.0 bits (162), Expect = 2e-11 Identities = 33/64 (51%), Positives = 42/64 (65%) Frame = -3 Query: 436 SRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 257 S+L E+F+E G V + +VYDR T RSRGF FVTM S EE +AI DG + GR ++V Sbjct: 128 SQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKV 187 Query: 256 NVAE 245 N E Sbjct: 188 NFPE 191 Score = 61.6 bits (148), Expect = 8e-10 Identities = 28/61 (45%), Positives = 43/61 (70%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L + F++ + A+V+YDR +GRSRGFGF+T +S E ++ A+ ++ LEGR LR+NV Sbjct: 233 LRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNV 292 Query: 250 A 248 A Sbjct: 293 A 293
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 67.0 bits (162), Expect = 2e-11 Identities = 29/62 (46%), Positives = 47/62 (75%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L F+ +G+++D++V+ DR+TGRSRGFGFVT +S+ + DAI ++G+ L+GR + VN Sbjct: 24 LENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQ 83 Query: 250 AE 245 A+ Sbjct: 84 AQ 85
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 63.2 bits (152), Expect = 3e-10 Identities = 30/65 (46%), Positives = 44/65 (67%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 D+ L + FS G + + VV DR+T RSRGFGF+T + E DA+ A++G+SL+GR + Sbjct: 18 DEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQI 77 Query: 262 RVNVA 248 RV+ A Sbjct: 78 RVDHA 82
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 62.8 bits (151), Expect = 4e-10 Identities = 26/58 (44%), Positives = 45/58 (77%) Frame = -3 Query: 418 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 FS +G+V++++++ DR+T RSRGFGFVT +++E + AI ++G+ L+GR + VN A+ Sbjct: 7 FSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 62.4 bits (150), Expect = 5e-10 Identities = 28/65 (43%), Positives = 49/65 (75%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A++G+S++GR + Sbjct: 18 NEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 77 Query: 262 RVNVA 248 RV+ A Sbjct: 78 RVDQA 82
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 62.4 bits (150), Expect = 5e-10 Identities = 28/65 (43%), Positives = 49/65 (75%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A++G+S++GR + Sbjct: 18 NEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 77 Query: 262 RVNVA 248 RV+ A Sbjct: 78 RVDQA 82
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 62.4 bits (150), Expect = 5e-10 Identities = 28/65 (43%), Positives = 49/65 (75%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A++G+S++GR + Sbjct: 18 NEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 77 Query: 262 RVNVA 248 RV+ A Sbjct: 78 RVDQA 82
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 62.4 bits (150), Expect = 5e-10 Identities = 28/65 (43%), Positives = 49/65 (75%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A++G+S++GR + Sbjct: 18 NEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 77 Query: 262 RVNVA 248 RV+ A Sbjct: 78 RVDQA 82
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 62.4 bits (150), Expect = 5e-10 Identities = 28/65 (43%), Positives = 49/65 (75%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A++G+S++GR + Sbjct: 18 NEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 77 Query: 262 RVNVA 248 RV+ A Sbjct: 78 RVDQA 82
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 60.5 bits (145), Expect = 2e-09 Identities = 29/67 (43%), Positives = 45/67 (67%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 D+ L + FS V +ARV+ ++ TGRSRG+GFV S++ + AI+A++GQ L G + Sbjct: 43 DEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNI 102 Query: 262 RVNVAEE 242 VNVA++ Sbjct: 103 SVNVAKD 109
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 60.5 bits (145), Expect = 2e-09 Identities = 27/61 (44%), Positives = 46/61 (75%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L + F+++G++ + VV DR+T RSRGFGFVT + ++ DA+ A++G+S++GR +RV+ Sbjct: 21 LEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQ 80 Query: 250 A 248 A Sbjct: 81 A 81
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 60.1 bits (144), Expect = 2e-09 Identities = 29/68 (42%), Positives = 44/68 (64%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD RL E+FS G + +V+ D DTGRSRGFGFV + EE A++ ++G+ + GR Sbjct: 202 MDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRM 260 Query: 265 LRVNVAEE 242 + V A++ Sbjct: 261 IYVGRAQK 268 Score = 48.9 bits (115), Expect = 6e-06 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 2/90 (2%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD RL + FS +G + A+V+ + G S+GFGFV +S EE A+ ++G+ + + Sbjct: 305 IDDDRLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKP 362 Query: 265 LRVNVAE--EXXXXXXXXRYIWRCTTTRLL 182 L V +A+ E +Y+ R T R + Sbjct: 363 LYVALAQRKEERKAILTNQYMQRLATMRAM 392 Score = 39.7 bits (91), Expect = 0.003 Identities = 22/63 (34%), Positives = 34/63 (53%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +D+ L + FS G ++ +VV D SRG+GFV +QE + AI ++G L R Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRK 167 Query: 265 LRV 257 + V Sbjct: 168 VFV 170
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 59.7 bits (143), Expect = 3e-09 Identities = 31/66 (46%), Positives = 44/66 (66%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V + L + FSE GKV+ A+V T +S GFGFV+ +S+EE++ AI AL+ LEG+ Sbjct: 195 VTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQK 254 Query: 265 LRVNVA 248 +RVN A Sbjct: 255 IRVNKA 260 Score = 55.8 bits (133), Expect = 5e-08 Identities = 26/68 (38%), Positives = 43/68 (63%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +++ L + EHG + A V+YD+ +GRSR FGFVTM + E+ + I L+ + GR Sbjct: 95 LNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRK 154 Query: 265 LRVNVAEE 242 ++VN+ E+ Sbjct: 155 IKVNITEK 162
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 59.7 bits (143), Expect = 3e-09 Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 + +L ++FSE G VV R+VYDR+TG+ +G+GF QE A+ L+G+ GRALR Sbjct: 29 EEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 88 Query: 259 V-NVAEE 242 V N A E Sbjct: 89 VDNAASE 95
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 59.7 bits (143), Expect = 3e-09 Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 + +L ++FSE G VV R+VYDR+TG+ +G+GF QE A+ L+G+ GRALR Sbjct: 29 EEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 88 Query: 259 V-NVAEE 242 V N A E Sbjct: 89 VDNAASE 95
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 59.7 bits (143), Expect = 3e-09 Identities = 29/65 (44%), Positives = 43/65 (66%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 D+ L + FS G + + VV DR+T RSRGFGF+T + E A+ A++G+SL+GR + Sbjct: 18 DEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQI 77 Query: 262 RVNVA 248 RV+ A Sbjct: 78 RVDHA 82
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 59.3 bits (142), Expect = 4e-09 Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 + +L ++FSE G VV R+VYDR+TG+ +G+GF QE A+ L+G+ GRALR Sbjct: 29 EEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 88 Query: 259 V-NVAEE 242 V N A E Sbjct: 89 VDNAASE 95
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 59.3 bits (142), Expect = 4e-09 Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 + +L ++FSE G VV R+VYDR+TG+ +G+GF QE A+ L+G+ GRALR Sbjct: 29 EEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 88 Query: 259 V-NVAEE 242 V N A E Sbjct: 89 VDNAASE 95
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 59.3 bits (142), Expect = 4e-09 Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 + +L ++FSE G VV R+VYDR+TG+ +G+GF QE A+ L+G+ GRALR Sbjct: 29 EEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 88 Query: 259 V-NVAEE 242 V N A E Sbjct: 89 VDNAASE 95
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 59.3 bits (142), Expect = 4e-09 Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 + +L ++FSE G VV R+VYDR+TG+ +G+GF QE A+ L+G+ GRALR Sbjct: 29 EEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 88 Query: 259 V-NVAEE 242 V N A E Sbjct: 89 VDNAASE 95
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 58.5 bits (140), Expect = 7e-09 Identities = 28/68 (41%), Positives = 44/68 (64%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD RL E+FS G + +V+ D D+GRSRGFGFV + EE A++ ++G+ + GR Sbjct: 202 MDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRM 260 Query: 265 LRVNVAEE 242 + V A++ Sbjct: 261 IYVGRAQK 268 Score = 46.6 bits (109), Expect = 3e-05 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD RL + F +G + A+V+ + G S+GFGFV +S EE A+ ++G+ + + Sbjct: 305 IDDDRLRKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKP 362 Query: 265 LRVNVAE--EXXXXXXXXRYIWRCTTTRLL 182 L V +A+ E +Y+ R T R + Sbjct: 363 LYVALAQRKEERKAILTNQYMQRLATMRAM 392 Score = 37.7 bits (86), Expect = 0.013 Identities = 21/63 (33%), Positives = 33/63 (52%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +D+ L + FS G ++ +VV D SRG+GFV + E + AI ++G L R Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRK 167 Query: 265 LRV 257 + V Sbjct: 168 VFV 170
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 58.5 bits (140), Expect = 7e-09 Identities = 27/66 (40%), Positives = 40/66 (60%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VDD L F + + V++D TG SRG+GFV+ SQ++ +A+ ++ GQ L GR Sbjct: 172 VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 231 Query: 265 LRVNVA 248 LR+N A Sbjct: 232 LRINWA 237
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 57.4 bits (137), Expect = 2e-08 Identities = 30/67 (44%), Positives = 42/67 (62%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V ++ L +F+E+G V ++ DR+TGR RGFGFV + + E AI ALDG GR Sbjct: 12 VSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEALDGAEWMGRD 71 Query: 265 LRVNVAE 245 L+VN A+ Sbjct: 72 LKVNKAK 78
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 56.2 bits (134), Expect = 4e-08 Identities = 27/68 (39%), Positives = 43/68 (63%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD RL E+FS G + +V+ D ++GRSRGFGFV + EE A+ ++G+ + GR Sbjct: 202 MDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRM 260 Query: 265 LRVNVAEE 242 + V A++ Sbjct: 261 VYVGRAQK 268 Score = 47.4 bits (111), Expect = 2e-05 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD RL + FS +G + +V+ + G S+GFGFV +S EE A+ ++G+ + + Sbjct: 305 IDDDRLRKEFSPYGTITSTKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKP 362 Query: 265 LRVNVAE--EXXXXXXXXRYIWRCTTTRLL 182 L V +A+ E +Y+ R T R + Sbjct: 363 LYVALAQRKEERKAILTNQYMQRLATMRAM 392 Score = 38.5 bits (88), Expect = 0.008 Identities = 22/63 (34%), Positives = 34/63 (53%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +D+ L + FS G ++ +VV D SRG+GFV +QE + AI ++G L R Sbjct: 110 IDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRK 167 Query: 265 LRV 257 + V Sbjct: 168 VFV 170
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 55.8 bits (133), Expect = 5e-08 Identities = 24/65 (36%), Positives = 44/65 (67%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 ++ L +F ++G++V+ ++ DR+T +SRGF FVT S + DA ++G+SL+G+A+ Sbjct: 20 NEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAI 79 Query: 262 RVNVA 248 +V A Sbjct: 80 KVEQA 84
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 55.8 bits (133), Expect = 5e-08 Identities = 24/65 (36%), Positives = 45/65 (69%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 ++ L +F ++G++V+ ++ DR+T +SRGF FVT+ S + DA ++G+SL+G+A+ Sbjct: 20 NEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAI 79 Query: 262 RVNVA 248 +V A Sbjct: 80 KVEQA 84
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 53.9 bits (128), Expect = 2e-07 Identities = 26/57 (45%), Positives = 39/57 (68%) Frame = -3 Query: 418 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 248 F+ GK+ DARVV D TG+S+G+GFV+ ++ + ++AI + GQ L GR +R N A Sbjct: 117 FAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 53.9 bits (128), Expect = 2e-07 Identities = 26/57 (45%), Positives = 39/57 (68%) Frame = -3 Query: 418 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 248 F+ GK+ DARVV D TG+S+G+GFV+ ++ + ++AI + GQ L GR +R N A Sbjct: 134 FAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 53.9 bits (128), Expect = 2e-07 Identities = 23/65 (35%), Positives = 43/65 (66%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 ++ L +F ++G++V+ ++ DR+T +SRGF FVT S + D ++G+SL+G+A+ Sbjct: 20 NEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAI 79 Query: 262 RVNVA 248 +V A Sbjct: 80 KVEQA 84
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 53.5 bits (127), Expect = 2e-07 Identities = 26/68 (38%), Positives = 43/68 (63%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD RL E F ++G + +V+ D D G+SRGFGFV+ E+ A+ ++G+ L G+A Sbjct: 202 MDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKA 260 Query: 265 LRVNVAEE 242 + V A++ Sbjct: 261 IFVGRAQK 268 Score = 47.4 bits (111), Expect = 2e-05 Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 2/89 (2%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD RL + F+ G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + + Sbjct: 305 IDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362 Query: 265 LRVNVAE--EXXXXXXXXRYIWRCTTTRL 185 L V +A+ E +Y+ R + R+ Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRV 391 Score = 38.9 bits (89), Expect = 0.006 Identities = 21/63 (33%), Positives = 35/63 (55%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI ++G L R Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRK 167 Query: 265 LRV 257 + V Sbjct: 168 VFV 170
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect = 3e-07 Identities = 26/68 (38%), Positives = 42/68 (61%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD +L ELF E+G +V+ D +G+S+GFGFV + E A+ L G+S++G+ Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKV 268 Query: 265 LRVNVAEE 242 L V A++ Sbjct: 269 LYVGRAQK 276
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect = 3e-07 Identities = 26/68 (38%), Positives = 42/68 (61%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD +L ELF E+G +V+ D +G+S+GFGFV + E A+ L G+S++G+ Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKV 268 Query: 265 LRVNVAEE 242 L V A++ Sbjct: 269 LYVGRAQK 276
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect = 3e-07 Identities = 26/68 (38%), Positives = 42/68 (61%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD +L ELF E+G +V+ D +G+S+GFGFV + E A+ L G+S++G+ Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKV 268 Query: 265 LRVNVAEE 242 L V A++ Sbjct: 269 LYVGRAQK 276
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect = 3e-07 Identities = 26/68 (38%), Positives = 42/68 (61%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD +L ELF E+G +V+ D +G+S+GFGFV + E A+ L G+S++G+ Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKV 268 Query: 265 LRVNVAEE 242 L V A++ Sbjct: 269 LYVGRAQK 276
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect = 3e-07 Identities = 26/68 (38%), Positives = 42/68 (61%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD +L ELF E+G +V+ D +G+S+GFGFV + E A+ L G+S++G+ Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKV 268 Query: 265 LRVNVAEE 242 L V A++ Sbjct: 269 LYVGRAQK 276
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect = 3e-07 Identities = 26/68 (38%), Positives = 42/68 (61%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD +L ELF E+G +V+ D +G+S+GFGFV + E A+ L G+S++G+ Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKV 268 Query: 265 LRVNVAEE 242 L V A++ Sbjct: 269 LYVGRAQK 276
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 52.8 bits (125), Expect = 4e-07 Identities = 25/57 (43%), Positives = 39/57 (68%) Frame = -3 Query: 418 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 248 F+ G++ DARVV D TG+S+G+GFV+ ++ + ++AI + GQ L GR +R N A Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 52.8 bits (125), Expect = 4e-07 Identities = 25/57 (43%), Positives = 39/57 (68%) Frame = -3 Query: 418 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 248 F+ G++ DARVV D TG+S+G+GFV+ ++ + ++AI + GQ L GR +R N A Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 52.8 bits (125), Expect = 4e-07 Identities = 23/66 (34%), Positives = 41/66 (62%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD L + F G V+ ARV+Y+R T RSRG+G+V ++ + AI + G+ ++GR Sbjct: 179 IDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRP 238 Query: 265 LRVNVA 248 + +++ Sbjct: 239 INCDMS 244 Score = 49.3 bits (116), Expect = 4e-06 Identities = 21/63 (33%), Positives = 40/63 (63%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 D + ELF++HG+VV R+ +T + +GFG+V ++ E+ A+ AL G+ ++ R + Sbjct: 279 DRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPV 338 Query: 262 RVN 254 R++ Sbjct: 339 RLD 341
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 52.8 bits (125), Expect = 4e-07 Identities = 25/68 (36%), Positives = 44/68 (64%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VDD L ELFS+ GK + +V+ D + G+S+GFGFV+ E+ + A+ ++G+ + G+ Sbjct: 202 VDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKI 260 Query: 265 LRVNVAEE 242 + V A++ Sbjct: 261 IFVGRAQK 268 Score = 47.4 bits (111), Expect = 2e-05 Identities = 24/67 (35%), Positives = 41/67 (61%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD +L + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + + Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362 Query: 265 LRVNVAE 245 L V +A+ Sbjct: 363 LYVALAQ 369
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 52.4 bits (124), Expect = 5e-07 Identities = 26/63 (41%), Positives = 41/63 (65%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 D+S L ++F G V + +V+ D +T + +GFGFVTM + +E AIA+L+G L R L Sbjct: 288 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 347 Query: 262 RVN 254 +V+ Sbjct: 348 QVS 350 Score = 48.5 bits (114), Expect = 7e-06 Identities = 22/60 (36%), Positives = 38/60 (63%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L +LFS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 141 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Score = 42.4 bits (98), Expect = 5e-04 Identities = 20/61 (32%), Positives = 36/61 (59%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L LF G++ ++V D+ TG+S G+GFV ++ + AI L+G L+ + ++V+ Sbjct: 55 LKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 114 Query: 250 A 248 A Sbjct: 115 A 115
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 52.4 bits (124), Expect = 5e-07 Identities = 26/63 (41%), Positives = 41/63 (65%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 D+S L ++F G V + +V+ D +T + +GFGFVTM + +E AIA+L+G L R L Sbjct: 288 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 347 Query: 262 RVN 254 +V+ Sbjct: 348 QVS 350 Score = 48.5 bits (114), Expect = 7e-06 Identities = 22/60 (36%), Positives = 38/60 (63%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L +LFS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 141 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Score = 42.4 bits (98), Expect = 5e-04 Identities = 20/61 (32%), Positives = 36/61 (59%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L LF G++ ++V D+ TG+S G+GFV ++ + AI L+G L+ + ++V+ Sbjct: 55 LKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 114 Query: 250 A 248 A Sbjct: 115 A 115
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 52.4 bits (124), Expect = 5e-07 Identities = 26/63 (41%), Positives = 41/63 (65%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 D+S L ++F G V + +V+ D +T + +GFGFVTM + +E AIA+L+G L R L Sbjct: 288 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 347 Query: 262 RVN 254 +V+ Sbjct: 348 QVS 350 Score = 48.5 bits (114), Expect = 7e-06 Identities = 22/60 (36%), Positives = 38/60 (63%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L +LFS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 141 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Score = 42.4 bits (98), Expect = 5e-04 Identities = 20/61 (32%), Positives = 36/61 (59%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L LF G++ ++V D+ TG+S G+GFV ++ + AI L+G L+ + ++V+ Sbjct: 55 LKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 114 Query: 250 A 248 A Sbjct: 115 A 115
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 52.4 bits (124), Expect = 5e-07 Identities = 26/61 (42%), Positives = 38/61 (62%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L +F ++G+V D + DR T SRGF FV + + +DA+ A+DG L+GR LRV + Sbjct: 29 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 88 Query: 250 A 248 A Sbjct: 89 A 89
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 52.4 bits (124), Expect = 5e-07 Identities = 26/61 (42%), Positives = 38/61 (62%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L +F ++G+V D + DR T SRGF FV + + +DA+ A+DG L+GR LRV + Sbjct: 29 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 88 Query: 250 A 248 A Sbjct: 89 A 89
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 52.4 bits (124), Expect = 5e-07 Identities = 26/61 (42%), Positives = 38/61 (62%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L +F ++G+V D + DR T SRGF FV + + +DA+ A+DG L+GR LRV + Sbjct: 29 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 88 Query: 250 A 248 A Sbjct: 89 A 89
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 52.4 bits (124), Expect = 5e-07 Identities = 26/61 (42%), Positives = 38/61 (62%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L +F ++G+V D + DR T SRGF FV + + +DA+ A+DG L+GR LRV + Sbjct: 29 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 88 Query: 250 A 248 A Sbjct: 89 A 89
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 52.4 bits (124), Expect = 5e-07 Identities = 26/61 (42%), Positives = 38/61 (62%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L +F ++G+V D + DR T SRGF FV + + +DA+ A+DG L+GR LRV + Sbjct: 30 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 89 Query: 250 A 248 A Sbjct: 90 A 90
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 52.4 bits (124), Expect = 5e-07 Identities = 26/63 (41%), Positives = 41/63 (65%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 D+S L ++F G V + +V+ D +T + +GFGFVTM + +E AIA+L+G L R L Sbjct: 289 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 348 Query: 262 RVN 254 +V+ Sbjct: 349 QVS 351 Score = 48.5 bits (114), Expect = 7e-06 Identities = 22/60 (36%), Positives = 38/60 (63%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L +LFS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 141 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Score = 42.4 bits (98), Expect = 5e-04 Identities = 20/61 (32%), Positives = 36/61 (59%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L LF G++ ++V D+ TG+S G+GFV ++ + AI L+G L+ + ++V+ Sbjct: 55 LKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 114 Query: 250 A 248 A Sbjct: 115 A 115
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 52.0 bits (123), Expect = 7e-07 Identities = 27/63 (42%), Positives = 41/63 (65%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 D+S L +LF G V + +V+ D +T + +GFGFVTM + +E AIA+L+G L R L Sbjct: 309 DESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 368 Query: 262 RVN 254 +V+ Sbjct: 369 QVS 371 Score = 48.9 bits (115), Expect = 6e-06 Identities = 22/60 (36%), Positives = 38/60 (63%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L +LFS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 148 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 207 Score = 41.6 bits (96), Expect = 0.001 Identities = 19/58 (32%), Positives = 35/58 (60%) Frame = -3 Query: 421 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 248 LF G++ ++V D+ TG+S G+GFV ++ + AI L+G L+ + ++V+ A Sbjct: 65 LFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 122
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 52.0 bits (123), Expect = 7e-07 Identities = 27/63 (42%), Positives = 40/63 (63%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 D+S L +LF G V + +V+ D T + +GFGFVTM + +E AIA+L+G L R L Sbjct: 296 DESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVL 355 Query: 262 RVN 254 +V+ Sbjct: 356 QVS 358 Score = 49.3 bits (116), Expect = 4e-06 Identities = 22/65 (33%), Positives = 40/65 (61%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 + + +LFS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G A Sbjct: 136 MSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAA 195 Query: 265 LRVNV 251 + V Sbjct: 196 EPITV 200 Score = 43.1 bits (100), Expect = 3e-04 Identities = 20/58 (34%), Positives = 34/58 (58%) Frame = -3 Query: 421 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 248 LF G + ++V D+ TG+S G+GFV + + D AI L+G L+ + ++V+ A Sbjct: 58 LFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 52.0 bits (123), Expect = 7e-07 Identities = 27/63 (42%), Positives = 40/63 (63%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 D+S L +LF G V + +V+ D T + +GFGFVTM + +E AIA+L+G L R L Sbjct: 296 DESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVL 355 Query: 262 RVN 254 +V+ Sbjct: 356 QVS 358 Score = 48.9 bits (115), Expect = 6e-06 Identities = 22/65 (33%), Positives = 40/65 (61%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 + + +LFS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G A Sbjct: 136 MSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAA 195 Query: 265 LRVNV 251 + V Sbjct: 196 EPITV 200 Score = 43.1 bits (100), Expect = 3e-04 Identities = 20/58 (34%), Positives = 34/58 (58%) Frame = -3 Query: 421 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 248 LF G + ++V D+ TG+S G+GFV + + D AI L+G L+ + ++V+ A Sbjct: 58 LFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 52.0 bits (123), Expect = 7e-07 Identities = 27/63 (42%), Positives = 41/63 (65%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 D+S L +LF G V + +V+ D +T + +GFGFVTM + +E AIA+L+G L R L Sbjct: 302 DESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 361 Query: 262 RVN 254 +V+ Sbjct: 362 QVS 364 Score = 48.9 bits (115), Expect = 6e-06 Identities = 22/60 (36%), Positives = 38/60 (63%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L +LFS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 141 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 200 Score = 41.6 bits (96), Expect = 0.001 Identities = 19/58 (32%), Positives = 35/58 (60%) Frame = -3 Query: 421 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 248 LF G++ ++V D+ TG+S G+GFV ++ + AI L+G L+ + ++V+ A Sbjct: 58 LFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 52.0 bits (123), Expect = 7e-07 Identities = 27/63 (42%), Positives = 41/63 (65%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 D+S L +LF G V + +V+ D +T + +GFGFVTM + +E AIA+L+G L R L Sbjct: 314 DESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 373 Query: 262 RVN 254 +V+ Sbjct: 374 QVS 376 Score = 48.9 bits (115), Expect = 6e-06 Identities = 22/60 (36%), Positives = 38/60 (63%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L +LFS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 153 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 212 Score = 41.6 bits (96), Expect = 0.001 Identities = 19/58 (32%), Positives = 35/58 (60%) Frame = -3 Query: 421 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 248 LF G++ ++V D+ TG+S G+GFV ++ + AI L+G L+ + ++V+ A Sbjct: 70 LFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 127
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 52.0 bits (123), Expect = 7e-07 Identities = 24/66 (36%), Positives = 42/66 (63%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VDD L + F E+G +V ARV+ D +GRS+G+G+V + E A+AA + ++GR Sbjct: 274 VDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRM 333 Query: 265 LRVNVA 248 + ++++ Sbjct: 334 VNLDLS 339 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/55 (27%), Positives = 28/55 (50%) Frame = -3 Query: 418 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 254 F G + R+ D +GR +GFG+VT + + + ++G + GR R++ Sbjct: 386 FGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAGRPCRLD 439
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 51.6 bits (122), Expect = 9e-07 Identities = 25/59 (42%), Positives = 37/59 (62%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 254 L E+FS +G + VVYD+ TGRSRGF FV ++ +A+ +G L+GR +RV+ Sbjct: 133 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 191
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 51.6 bits (122), Expect = 9e-07 Identities = 24/68 (35%), Positives = 43/68 (63%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD RL ELF + G + +V+ D ++G+S+GFGFV+ E+ A+ ++G+ L G+ Sbjct: 202 MDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260 Query: 265 LRVNVAEE 242 + V A++ Sbjct: 261 IYVGRAQK 268 Score = 47.8 bits (112), Expect = 1e-05 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 2/88 (2%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD RL + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + + Sbjct: 305 IDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362 Query: 265 LRVNVAE--EXXXXXXXXRYIWRCTTTR 188 L V +A+ E +Y+ R + R Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVR 390 Score = 39.3 bits (90), Expect = 0.004 Identities = 21/63 (33%), Positives = 35/63 (55%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI ++G L R Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167 Query: 265 LRV 257 + V Sbjct: 168 VFV 170
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 51.6 bits (122), Expect = 9e-07 Identities = 24/68 (35%), Positives = 43/68 (63%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD RL ELF + G + +V+ D ++G+S+GFGFV+ E+ A+ ++G+ L G+ Sbjct: 202 MDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260 Query: 265 LRVNVAEE 242 + V A++ Sbjct: 261 IYVGRAQK 268 Score = 47.8 bits (112), Expect = 1e-05 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 2/88 (2%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD RL + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + + Sbjct: 305 IDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362 Query: 265 LRVNVAE--EXXXXXXXXRYIWRCTTTR 188 L V +A+ E +Y+ R + R Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVR 390 Score = 39.3 bits (90), Expect = 0.004 Identities = 21/63 (33%), Positives = 35/63 (55%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI ++G L R Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167 Query: 265 LRV 257 + V Sbjct: 168 VFV 170
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 51.6 bits (122), Expect = 9e-07 Identities = 25/59 (42%), Positives = 37/59 (62%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 254 L E+FS +G + VVYD+ TGRSRGF FV ++ +A+ +G L+GR +RV+ Sbjct: 135 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 51.6 bits (122), Expect = 9e-07 Identities = 23/59 (38%), Positives = 38/59 (64%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 254 L E+FS++G + D +VYD+ + RSRGF FV + ++ +A +G L+GR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 51.6 bits (122), Expect = 9e-07 Identities = 23/59 (38%), Positives = 38/59 (64%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 254 L E+FS++G + D +VYD+ + RSRGF FV + ++ +A +G L+GR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 51.6 bits (122), Expect = 9e-07 Identities = 23/59 (38%), Positives = 38/59 (64%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 254 L E+FS++G + D +VYD+ + RSRGF FV + ++ +A +G L+GR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 50.8 bits (120), Expect = 1e-06 Identities = 22/68 (32%), Positives = 44/68 (64%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 ++D RL E+F ++G + +V+ D D G+S+GFGFV+ E+ A+ ++G+ + G++ Sbjct: 202 MNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKS 260 Query: 265 LRVNVAEE 242 + V A++ Sbjct: 261 MFVGRAQK 268 Score = 45.8 bits (107), Expect = 5e-05 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD RL + F G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + + Sbjct: 305 IDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362 Query: 265 LRVNVAE--EXXXXXXXXRYIWRCTTTRL 185 L V +A+ E +Y+ R + R+ Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRV 391 Score = 38.9 bits (89), Expect = 0.006 Identities = 21/63 (33%), Positives = 35/63 (55%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI ++G L R Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRK 167 Query: 265 LRV 257 + V Sbjct: 168 VFV 170
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 50.4 bits (119), Expect = 2e-06 Identities = 23/68 (33%), Positives = 43/68 (63%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD RL +LF + G + +V+ D ++G+S+GFGFV+ E+ A+ ++G+ L G+ Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260 Query: 265 LRVNVAEE 242 + V A++ Sbjct: 261 IYVGRAQK 268 Score = 48.5 bits (114), Expect = 7e-06 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD RL + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + + Sbjct: 305 IDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362 Query: 265 LRVNVAE--EXXXXXXXXRYIWRCTTTR 188 L V +A+ E Y+ R + R Sbjct: 363 LYVALAQRKEERQAYLTNEYMQRMASVR 390 Score = 34.7 bits (78), Expect = 0.11 Identities = 19/63 (30%), Positives = 33/63 (52%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +++ L + S G ++ VV D + S+G+GFV + E + AI ++G L GR Sbjct: 110 INNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRK 167 Query: 265 LRV 257 + V Sbjct: 168 VFV 170
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 50.4 bits (119), Expect = 2e-06 Identities = 23/68 (33%), Positives = 43/68 (63%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD RL +LF + G + +V+ D ++G+S+GFGFV+ E+ A+ ++G+ L G+ Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260 Query: 265 LRVNVAEE 242 + V A++ Sbjct: 261 IYVGRAQK 268 Score = 47.8 bits (112), Expect = 1e-05 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 2/88 (2%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD RL + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + + Sbjct: 305 IDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362 Query: 265 LRVNVAE--EXXXXXXXXRYIWRCTTTR 188 L V +A+ E +Y+ R + R Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVR 390 Score = 39.3 bits (90), Expect = 0.004 Identities = 21/63 (33%), Positives = 35/63 (55%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI ++G L R Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167 Query: 265 LRV 257 + V Sbjct: 168 VFV 170
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 50.4 bits (119), Expect = 2e-06 Identities = 23/68 (33%), Positives = 43/68 (63%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD RL +LF + G + +V+ D ++G+S+GFGFV+ E+ A+ ++G+ L G+ Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260 Query: 265 LRVNVAEE 242 + V A++ Sbjct: 261 IYVGRAQK 268 Score = 47.8 bits (112), Expect = 1e-05 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 2/88 (2%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD RL + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + + Sbjct: 305 IDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362 Query: 265 LRVNVAE--EXXXXXXXXRYIWRCTTTR 188 L V +A+ E +Y+ R + R Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVR 390 Score = 39.3 bits (90), Expect = 0.004 Identities = 21/63 (33%), Positives = 35/63 (55%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI ++G L R Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167 Query: 265 LRV 257 + V Sbjct: 168 VFV 170
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 50.4 bits (119), Expect = 2e-06 Identities = 25/63 (39%), Positives = 40/63 (63%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 D+ L ++F G V + +V+ D +T + +GFGFVTM + EE AIA+L+G L + L Sbjct: 256 DEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKIL 315 Query: 262 RVN 254 +V+ Sbjct: 316 QVS 318 Score = 43.9 bits (102), Expect = 2e-04 Identities = 18/58 (31%), Positives = 35/58 (60%) Frame = -3 Query: 424 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 ++FS G+++++RV+ D+ TG SRG F+ + E ++AI + +G G + + V Sbjct: 124 DMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV 181 Score = 43.9 bits (102), Expect = 2e-04 Identities = 21/61 (34%), Positives = 37/61 (60%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L LFS G+V A+++ D+ G S G+GFV + ++ + AI L+G L+ + ++V+ Sbjct: 36 LRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 Query: 250 A 248 A Sbjct: 96 A 96
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 50.1 bits (118), Expect = 3e-06 Identities = 25/63 (39%), Positives = 40/63 (63%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 D+ L ++F G V + +V+ D +T + +GFGFVTM + EE AIA+L+G L + L Sbjct: 256 DEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASLNGYRLGDKIL 315 Query: 262 RVN 254 +V+ Sbjct: 316 QVS 318 Score = 45.1 bits (105), Expect = 8e-05 Identities = 21/61 (34%), Positives = 38/61 (62%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L LFS G+V A+++ D+ G S G+GFV + ++ + AI+ L+G L+ + ++V+ Sbjct: 36 LRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSY 95 Query: 250 A 248 A Sbjct: 96 A 96 Score = 42.4 bits (98), Expect = 5e-04 Identities = 18/58 (31%), Positives = 34/58 (58%) Frame = -3 Query: 424 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 ++FS G+++++RV+ D+ TG SRG F+ + E ++AI + G G + + V Sbjct: 124 DMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIGHKPPGSSEPITV 181
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 49.7 bits (117), Expect = 3e-06 Identities = 27/66 (40%), Positives = 40/66 (60%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V + L ELF + G VV+ + DR TG+ +G+GFV S+E+ D AI ++ L G+ Sbjct: 24 VSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKP 83 Query: 265 LRVNVA 248 +RVN A Sbjct: 84 IRVNKA 89 Score = 47.0 bits (110), Expect = 2e-05 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDA-RVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 269 +D+ L + FS G ++ +++ D DTG S+G+ F+ AS + D AI A++GQ L R Sbjct: 111 IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR 170 Query: 268 ALRVNVA 248 + V+ A Sbjct: 171 PITVSYA 177
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 49.7 bits (117), Expect = 3e-06 Identities = 25/67 (37%), Positives = 42/67 (62%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 + D +L E+FS G V ++V+ D + G S+G GFV A+ EE +A++ L G+ +E + Sbjct: 329 ISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKP 387 Query: 265 LRVNVAE 245 L V +A+ Sbjct: 388 LYVAIAQ 394 Score = 42.7 bits (99), Expect = 4e-04 Identities = 22/63 (34%), Positives = 35/63 (55%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +D L + FS G +V +V D +G+S+G+GFV A++E AI L+G L + Sbjct: 135 IDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQ 193 Query: 265 LRV 257 + V Sbjct: 194 VYV 196 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/66 (31%), Positives = 37/66 (56%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 D L F E+GK+ A V+ D + G+S+GFGFV + ++ A+ +L+G + + Sbjct: 228 DDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWY 286 Query: 259 VNVAEE 242 V A++ Sbjct: 287 VGRAQK 292
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 49.7 bits (117), Expect = 3e-06 Identities = 25/67 (37%), Positives = 44/67 (65%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VDD +L E+FSE+G V ++V+ + G SRGFGFV ++ EE A++ ++G+ + + Sbjct: 343 VDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKP 401 Query: 265 LRVNVAE 245 L + +A+ Sbjct: 402 LYIALAQ 408 Score = 42.0 bits (97), Expect = 7e-04 Identities = 22/63 (34%), Positives = 34/63 (53%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +D+ L E FS G ++ +V D TGRS+G+GFV +E AI L+G + + Sbjct: 147 IDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQ 205 Query: 265 LRV 257 + V Sbjct: 206 VFV 208
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 49.3 bits (116), Expect = 4e-06 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSL-EGRA 266 DD +L E F +GK+ +V+ D G+S+GFGFV + E + A+ AL+G+ + EG++ Sbjct: 195 DDEKLKEFFEPYGKITSYKVMSKED-GKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKS 253 Query: 265 LRVNVAEE 242 L V A++ Sbjct: 254 LYVARAQK 261 Score = 47.4 bits (111), Expect = 2e-05 Identities = 25/67 (37%), Positives = 40/67 (59%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DD RL FS +G + A+V+ D + GRS+GFGFV + E A+ L+G+ + + Sbjct: 298 IDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELNGRVVGSKP 356 Query: 265 LRVNVAE 245 L V +A+ Sbjct: 357 LYVALAQ 363 Score = 39.3 bits (90), Expect = 0.004 Identities = 18/63 (28%), Positives = 36/63 (57%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +D+ + + FS G ++ +V D + G S+G+GFV ++E + +I ++G L G+ Sbjct: 101 IDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKK 159 Query: 265 LRV 257 + V Sbjct: 160 VYV 162
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 49.3 bits (116), Expect = 4e-06 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 D+ L + F G + +A V+ DR TG+SRG+GFVTMA + D A ++GR Sbjct: 45 DASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD-PNPIIDGRKAN 103 Query: 259 VNV----AEEXXXXXXXXRYIWRCTTTRLLRKRHDSTPDTGLDPIIILPSILV 113 VN+ A+ + + T L+++ + TP P I+ PS+++ Sbjct: 104 VNLAYLGAKPRSLQTGFAVGVQQLHPT-LIQRTYGLTPHYIYPPAIVQPSVVI 155
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 48.9 bits (115), Expect = 6e-06 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDA-RVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 269 VD+ L + FS G ++ +++ D D+G S+GF F+ AS E D A+ A++GQ L R Sbjct: 111 VDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNR 170 Query: 268 ALRVNVA 248 A+ V+ A Sbjct: 171 AITVSYA 177 Score = 45.1 bits (105), Expect = 8e-05 Identities = 26/66 (39%), Positives = 36/66 (54%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V +S L EL + G VV + DR T +GFGFV +E+ D AI L+ L G+ Sbjct: 24 VSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKP 83 Query: 265 LRVNVA 248 ++VN A Sbjct: 84 IKVNKA 89
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 48.9 bits (115), Expect = 6e-06 Identities = 25/67 (37%), Positives = 41/67 (61%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VDD RL FS G + A+++ D + G+S+GFGFV + EE + A+ ++ + L G+ Sbjct: 375 VDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKP 433 Query: 265 LRVNVAE 245 L V +A+ Sbjct: 434 LYVALAQ 440 Score = 37.0 bits (84), Expect = 0.022 Identities = 19/68 (27%), Positives = 37/68 (54%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 + + +LF + G++ +V D++ + RGFGFV A+ E A+ L+ + +G+ Sbjct: 272 ITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYKGKK 330 Query: 265 LRVNVAEE 242 L V A++ Sbjct: 331 LYVGRAQK 338
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 48.5 bits (114), Expect = 7e-06 Identities = 20/38 (52%), Positives = 30/38 (78%) Frame = -3 Query: 424 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 311 E FS+ G ++DA+++ D+DTG+SRGFGFVT S + +D Sbjct: 261 EFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVD 298 Score = 43.5 bits (101), Expect = 2e-04 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA---LDGQSLE 275 + L E F ++G V D +++ D TGRSRGFGF++ +D+ + LDG+ ++ Sbjct: 172 EDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVID 229
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 48.5 bits (114), Expect = 7e-06 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Frame = -3 Query: 445 VDDSRLVELF-SEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 269 V +S+L ELF + + A++V+D+ TG S+G+GFV + +E A++ + G L GR Sbjct: 174 VTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGR 233 Query: 268 ALRV 257 A++V Sbjct: 234 AIKV 237
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 48.1 bits (113), Expect = 1e-05 Identities = 24/61 (39%), Positives = 34/61 (55%) Frame = -3 Query: 424 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 +LFS +G++ + V D TG S+GF +V A EE A LD Q +GR L + A+ Sbjct: 343 KLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIELDKQIFQGRLLHILAAD 402 Query: 244 E 242 E Sbjct: 403 E 403 Score = 34.7 bits (78), Expect = 0.11 Identities = 22/61 (36%), Positives = 32/61 (52%) Frame = -3 Query: 424 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 ELF+ G++ RV D +RGF FV +E ++A+ L G L GR L + AE Sbjct: 756 ELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFVLPKEAENAMDQLQGVHLLGRRLVMQPAE 814 Query: 244 E 242 + Sbjct: 815 Q 815 Score = 32.0 bits (71), Expect = 0.71 Identities = 15/54 (27%), Positives = 32/54 (59%) Frame = -3 Query: 406 GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 G + D R++ +R+ G+SR F F+ ++++ DA+ DG + + V++A+ Sbjct: 37 GLITDLRILKNRE-GKSRRFAFIGYKNEQDALDAVNYFDGSFIYTSKIEVDMAK 89 Score = 31.2 bits (69), Expect = 1.2 Identities = 12/37 (32%), Positives = 24/37 (64%) Frame = -3 Query: 358 SRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 248 S GFGFV ++E+ I+A+DG ++G +++ ++ Sbjct: 685 SMGFGFVEFRTKEQATAVISAMDGTVIDGHKIQLKLS 721
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 47.8 bits (112), Expect = 1e-05 Identities = 25/62 (40%), Positives = 38/62 (61%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L LFS+HGKV+ A+VV + + +R +GFVTM++ +E I+ L L GR + V Sbjct: 467 LKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMISVEK 526 Query: 250 AE 245 A+ Sbjct: 527 AK 528
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 47.8 bits (112), Expect = 1e-05 Identities = 21/79 (26%), Positives = 40/79 (50%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 + + L +F G++ +++ D +TGRS+G+GF+T + E A+ L+G L GR Sbjct: 261 ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 320 Query: 265 LRVNVAEEXXXXXXXXRYI 209 ++V E ++ Sbjct: 321 MKVGHVTERTDASSASSFL 339 Score = 36.6 bits (83), Expect = 0.029 Identities = 23/62 (37%), Positives = 33/62 (53%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L E FS GKV D R++ DR++ RSRG +V + AI L GQ + G + V Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAI-GLTGQRVLGVPIIVQA 227 Query: 250 AE 245 ++ Sbjct: 228 SQ 229
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 47.8 bits (112), Expect = 1e-05 Identities = 21/79 (26%), Positives = 40/79 (50%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 + + L +F G++ +++ D +TGRS+G+GF+T + E A+ L+G L GR Sbjct: 261 ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 320 Query: 265 LRVNVAEEXXXXXXXXRYI 209 ++V E ++ Sbjct: 321 MKVGHVTERTDASSASSFL 339 Score = 35.8 bits (81), Expect = 0.049 Identities = 22/62 (35%), Positives = 33/62 (53%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L E FS GKV D R++ DR++ RS+G +V + AI L GQ + G + V Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQA 227 Query: 250 AE 245 ++ Sbjct: 228 SQ 229
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 47.8 bits (112), Expect = 1e-05 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 4/113 (3%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 D+ L + F G + +A V+ DR TG+SRG+GFVTMA + + A ++GR Sbjct: 24 DASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD-PNPIIDGRKAN 82 Query: 259 VNV----AEEXXXXXXXXRYIWRCTTTRLLRKRHDSTPDTGLDPIIILPSILV 113 VN+ A+ + + T L+++ + TP P I+ PS+++ Sbjct: 83 VNLAYLGAKPRSLQTGFAIGVQQLHPT-LIQRTYGLTPHYIYPPAIVQPSVVI 134
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 47.8 bits (112), Expect = 1e-05 Identities = 24/68 (35%), Positives = 38/68 (55%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 + + L +F GK+ + ++ D DTGRS+G+GF+T + E A+ L+G L GR Sbjct: 274 ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP 333 Query: 265 LRVNVAEE 242 +RV E Sbjct: 334 MRVGHVTE 341 Score = 37.0 bits (84), Expect = 0.022 Identities = 22/62 (35%), Positives = 34/62 (54%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L + FS GKV D R++ DR++ RS+G +V + + AI L GQ L G + V Sbjct: 182 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 240 Query: 250 AE 245 ++ Sbjct: 241 SQ 242
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 47.8 bits (112), Expect = 1e-05 Identities = 25/67 (37%), Positives = 41/67 (61%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VDD +L E F+ +G + A+V+ + G+S+GFGFV ++ EE AI + Q + G+ Sbjct: 332 VDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKP 390 Query: 265 LRVNVAE 245 L V +A+ Sbjct: 391 LYVAIAQ 397 Score = 43.5 bits (101), Expect = 2e-04 Identities = 24/66 (36%), Positives = 36/66 (54%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 D + ELF++ G +V A + D D G+ +GFGFV E+ A+ AL+ L G L Sbjct: 231 DEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLY 289 Query: 259 VNVAEE 242 V A++ Sbjct: 290 VGRAQK 295 Score = 43.1 bits (100), Expect = 3e-04 Identities = 21/63 (33%), Positives = 37/63 (58%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +D+ L + FS G ++ +++ D + G+S+GFGFV + +AI AL+G L G+ Sbjct: 136 IDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQE 194 Query: 265 LRV 257 + V Sbjct: 195 IYV 197
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 47.0 bits (110), Expect = 2e-05 Identities = 24/67 (35%), Positives = 38/67 (56%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 + + L ++FS+ G V R++ + T SRGFGF++ ++ EE AI L+ Q GR Sbjct: 112 MQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRV 171 Query: 265 LRVNVAE 245 L V A+ Sbjct: 172 LNVQKAK 178
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 46.6 bits (109), Expect = 3e-05 Identities = 21/67 (31%), Positives = 42/67 (62%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 ++ L +F +HG + + ++ DR T +SRGF F+T + + +A ++G+SL G+A+ Sbjct: 20 NEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAI 78 Query: 262 RVNVAEE 242 +V A++ Sbjct: 79 KVEQAKK 85
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 46.2 bits (108), Expect = 4e-05 Identities = 22/63 (34%), Positives = 39/63 (61%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 +++ L +LF G V ++V D T + +G+GFV+M + +E AI AL+G ++ R L Sbjct: 450 EEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVL 509 Query: 262 RVN 254 +V+ Sbjct: 510 QVS 512
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 46.2 bits (108), Expect = 4e-05 Identities = 22/63 (34%), Positives = 39/63 (61%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 +++ L +LF G V ++V D T + +G+GFV+M + +E AI AL+G ++ R L Sbjct: 414 EEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVL 473 Query: 262 RVN 254 +V+ Sbjct: 474 QVS 476
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 46.2 bits (108), Expect = 4e-05 Identities = 23/68 (33%), Positives = 40/68 (58%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V + L + FS+ G + +++ D + G+S+GFGFV ++ EE DA+ GQ G+ Sbjct: 315 VTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKP 373 Query: 265 LRVNVAEE 242 L V +A++ Sbjct: 374 LYVAIAQK 381 Score = 33.9 bits (76), Expect = 0.19 Identities = 17/63 (26%), Positives = 32/63 (50%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V + L + F+E + R+ D +GRS +G+ S+++ + AI + L G+ Sbjct: 35 VTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKM 94 Query: 265 LRV 257 +RV Sbjct: 95 IRV 97 Score = 32.7 bits (73), Expect = 0.42 Identities = 18/63 (28%), Positives = 33/63 (52%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V ++ L ++F + G +V +V D G+SRG+GFV ++ AI L+ + + Sbjct: 123 VTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKE 181 Query: 265 LRV 257 + V Sbjct: 182 IYV 184 Score = 31.6 bits (70), Expect = 0.93 Identities = 19/68 (27%), Positives = 32/68 (47%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V + L E F+E GK+V + D + RG+ FV + E+ A ++G + Sbjct: 212 VSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKC 270 Query: 265 LRVNVAEE 242 L V A++ Sbjct: 271 LYVGRAQK 278
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 46.2 bits (108), Expect = 4e-05 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA----LDGQSLE 275 D L E F + GK+ D V+ D T RSRGFGFVT + EE+D +++A +DG+ +E Sbjct: 40 DDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDGRVVE 98 Score = 36.2 bits (82), Expect = 0.038 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 ++ L + F +GK+ V+ DR +G+ RGF FVT + +D + Sbjct: 130 EEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 46.2 bits (108), Expect = 4e-05 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA----LDGQSLE 275 D L E F + GK+ D V+ D T RSRGFGFVT + EE+D +++A +DG+ +E Sbjct: 40 DDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDGRVVE 98 Score = 33.9 bits (76), Expect = 0.19 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 ++ L + +GK+ V+ DR +G+ RGF FVT + +D + Sbjct: 130 EEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 45.8 bits (107), Expect = 5e-05 Identities = 25/62 (40%), Positives = 38/62 (61%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L LFS++GKVV A+VV + + +R +GFVTM++ +E I+ L L GR + V Sbjct: 423 LKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMISVEK 482 Query: 250 AE 245 A+ Sbjct: 483 AK 484
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 45.8 bits (107), Expect = 5e-05 Identities = 25/67 (37%), Positives = 42/67 (62%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V+D +L E+FSE+G V +V+ + G SRGFGFV ++ EE A+ ++G+ + + Sbjct: 339 VNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKP 397 Query: 265 LRVNVAE 245 L V +A+ Sbjct: 398 LYVALAQ 404 Score = 40.4 bits (93), Expect = 0.002 Identities = 22/63 (34%), Positives = 33/63 (52%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +D+ L E FS G ++ +V D GRS+G+GFV +E AI L+G L + Sbjct: 143 IDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQ 201 Query: 265 LRV 257 + V Sbjct: 202 VFV 204
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 45.4 bits (106), Expect = 6e-05 Identities = 23/64 (35%), Positives = 37/64 (57%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 D L ++F + GK++D ++++ S+GFGFVT + + D A L G +EGR + Sbjct: 129 DPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIE 186 Query: 259 VNVA 248 VN A Sbjct: 187 VNNA 190
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 45.4 bits (106), Expect = 6e-05 Identities = 23/64 (35%), Positives = 37/64 (57%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 D L ++F + GK++D ++++ S+GFGFVT + + D A L G +EGR + Sbjct: 134 DPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIE 191 Query: 259 VNVA 248 VN A Sbjct: 192 VNNA 195
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 45.4 bits (106), Expect = 6e-05 Identities = 23/64 (35%), Positives = 37/64 (57%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 D L ++F + GK++D ++++ S+GFGFVT + + D A L G +EGR + Sbjct: 130 DPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIE 187 Query: 259 VNVA 248 VN A Sbjct: 188 VNNA 191
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 45.4 bits (106), Expect = 6e-05 Identities = 26/66 (39%), Positives = 39/66 (59%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VD+ L + FS G++V A V + GRS+G+GFV+ S E D AI A++ Q L + Sbjct: 110 VDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKP 169 Query: 265 LRVNVA 248 + V+ A Sbjct: 170 ITVSYA 175 Score = 39.7 bits (91), Expect = 0.003 Identities = 23/68 (33%), Positives = 35/68 (51%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V DS L EL + G VV+ + DR GFGF +++++ A L+ L G+ Sbjct: 22 VTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKP 81 Query: 265 LRVNVAEE 242 +RVN A + Sbjct: 82 IRVNRASQ 89
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 45.1 bits (105), Expect = 8e-05 Identities = 25/67 (37%), Positives = 38/67 (56%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V D +L + FS + A VV D + RSRGFGFV+ A +++ +A+A G Sbjct: 37 VTDEQLADFFSNFAPIKHAVVVKDTNK-RSRGFGFVSFAVEDDTKEALAKARKTKFNGHI 95 Query: 265 LRVNVAE 245 LRV++A+ Sbjct: 96 LRVDIAK 102 Score = 34.7 bits (78), Expect = 0.11 Identities = 21/65 (32%), Positives = 33/65 (50%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 D +L ++F +G VV+A + RD G+ GF FVTM A+ ++GR + Sbjct: 160 DPVKLKKIFGRYGTVVEATIPRKRD-GKLCGFAFVTMKKISNCRIALENTKDLKIDGRKV 218 Query: 262 RVNVA 248 V+ A Sbjct: 219 AVDFA 223
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 45.1 bits (105), Expect = 8e-05 Identities = 26/80 (32%), Positives = 38/80 (47%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VDD L F G + D ++ D +T + RGF FV E+ AI ++ L GR Sbjct: 17 VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 76 Query: 265 LRVNVAEEXXXXXXXXRYIW 206 +RVN+A+ R +W Sbjct: 77 IRVNLAKPMRIKEGSSRPVW 96
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 45.1 bits (105), Expect = 8e-05 Identities = 26/80 (32%), Positives = 38/80 (47%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VDD L F G + D ++ D +T + RGF FV E+ AI ++ L GR Sbjct: 17 VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 76 Query: 265 LRVNVAEEXXXXXXXXRYIW 206 +RVN+A+ R +W Sbjct: 77 IRVNLAKPMRIKEGSSRPVW 96
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 44.7 bits (104), Expect = 1e-04 Identities = 20/51 (39%), Positives = 33/51 (64%) Frame = -3 Query: 397 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 + AR+V DRDTG S+GFGFV +S E+ A A++ ++G + ++ A+ Sbjct: 577 ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAK 627 Score = 28.9 bits (63), Expect = 6.0 Identities = 12/52 (23%), Positives = 30/52 (57%) Frame = -3 Query: 397 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEE 242 ++ R+V +++ G S+G ++ ++ E + A+ G ++GRA+ ++ E Sbjct: 395 LEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGE 445
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 44.3 bits (103), Expect = 1e-04 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 4/59 (6%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA----LDGQSLE 275 D L E F + G + D V+ D T RSRGFGFVT + EE+D A+ A +DG+ +E Sbjct: 48 DDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVE 106 Score = 37.4 bits (85), Expect = 0.017 Identities = 15/47 (31%), Positives = 27/47 (57%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 ++ L + F ++GK+ V+ DR +G+ RGF FVT + +D + Sbjct: 138 EEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 44.3 bits (103), Expect = 1e-04 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 4/59 (6%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA----LDGQSLE 275 D L E F + G + D V+ D T RSRGFGFVT + EE+D A+ A +DG+ +E Sbjct: 48 DDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVE 106 Score = 37.4 bits (85), Expect = 0.017 Identities = 15/47 (31%), Positives = 27/47 (57%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 ++ L + F ++GK+ V+ DR +G+ RGF FVT + +D + Sbjct: 138 EEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 44.3 bits (103), Expect = 1e-04 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 4/59 (6%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA----LDGQSLE 275 D L F + G + D V+ D +T RSRGFGFVT A+ EE+D A+ A +DG+ +E Sbjct: 26 DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE 84 Score = 37.0 bits (84), Expect = 0.022 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 ++ L + F ++GK+ ++ DR +G+ RGF FVT + +D + Sbjct: 116 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 44.3 bits (103), Expect = 1e-04 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 4/59 (6%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA----LDGQSLE 275 D L F + G + D V+ D +T RSRGFGFVT A+ EE+D A+ A +DG+ +E Sbjct: 26 DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE 84 Score = 37.0 bits (84), Expect = 0.022 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 ++ L + F ++GK+ ++ DR +G+ RGF FVT + +D + Sbjct: 116 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 44.3 bits (103), Expect = 1e-04 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 4/59 (6%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA----LDGQSLE 275 D L F + G + D V+ D +T RSRGFGFVT A+ EE+D A+ A +DG+ +E Sbjct: 26 DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE 84 Score = 37.0 bits (84), Expect = 0.022 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 ++ L + F ++GK+ ++ DR +G+ RGF FVT + +D + Sbjct: 116 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 44.3 bits (103), Expect = 1e-04 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 4/59 (6%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA----LDGQSLE 275 D L E F + G + D V+ D T RSRGFGFVT + EE+D A+ A +DG+ +E Sbjct: 48 DDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVE 106 Score = 37.4 bits (85), Expect = 0.017 Identities = 15/47 (31%), Positives = 27/47 (57%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 ++ L + F ++GK+ V+ DR +G+ RGF FVT + +D + Sbjct: 138 EEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 44.3 bits (103), Expect = 1e-04 Identities = 25/62 (40%), Positives = 37/62 (59%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L LFS++GKVV A+VV + + +R +GFVTM++ EE I L L G+ + V Sbjct: 422 LKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEK 481 Query: 250 AE 245 A+ Sbjct: 482 AK 483
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 44.3 bits (103), Expect = 1e-04 Identities = 20/51 (39%), Positives = 34/51 (66%) Frame = -3 Query: 397 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 V+AR+V DRDTG S+GFGFV ++ E+ A A++ ++G + ++ A+ Sbjct: 526 VNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAK 576 Score = 36.2 bits (82), Expect = 0.038 Identities = 13/43 (30%), Positives = 29/43 (67%) Frame = -3 Query: 373 RDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 ++ GR++GF F+ +S E+ DA+ + + +EGR++R+ ++ Sbjct: 444 QNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQ 486 Score = 28.9 bits (63), Expect = 6.0 Identities = 14/45 (31%), Positives = 27/45 (60%) Frame = -3 Query: 382 VYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 248 + D G S+ FG+V +S+EE++ A+ L G+ + G +++ A Sbjct: 263 IQDIRIGNSKKFGYVDFSSEEEVEKAL-KLTGKKILGTEVKIEKA 306
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 44.3 bits (103), Expect = 1e-04 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 4/59 (6%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA----LDGQSLE 275 D L F + G + D V+ D +T RSRGFGFVT A+ EE+D A+ A +DG+ +E Sbjct: 26 DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE 84 Score = 37.0 bits (84), Expect = 0.022 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 ++ L + F ++GK+ ++ DR +G+ RGF FVT + +D + Sbjct: 116 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 43.9 bits (102), Expect = 2e-04 Identities = 19/58 (32%), Positives = 35/58 (60%) Frame = -3 Query: 418 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 F +G + D + D+ + +S+GFGFV + + + A+ DG+ ++GR LRV +A+ Sbjct: 39 FERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAK 96
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 43.9 bits (102), Expect = 2e-04 Identities = 25/62 (40%), Positives = 36/62 (58%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L LFS +GKVV A+VV + + +R +GFVTM++ EE I L L G+ + V Sbjct: 444 LKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEK 503 Query: 250 AE 245 A+ Sbjct: 504 AK 505
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 43.9 bits (102), Expect = 2e-04 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 4/59 (6%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA----LDGQSLE 275 D L E F + G + D V+ D ++ RSRGFGFVT S +E+D A+ A +DG+ +E Sbjct: 27 DESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTARPHKVDGRVVE 85 Score = 38.9 bits (89), Expect = 0.006 Identities = 15/47 (31%), Positives = 27/47 (57%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 ++ L E F ++GK+ ++ DR +G+ RGF FVT + +D + Sbjct: 117 EEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIV 163
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 43.9 bits (102), Expect = 2e-04 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 4/59 (6%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA----ALDGQSLE 275 D + E +S+ G++ D V+ D T RSRGFGFVT + + E+D A+ +DG++++ Sbjct: 36 DDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 94 Score = 39.7 bits (91), Expect = 0.003 Identities = 15/46 (32%), Positives = 27/46 (58%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 + L E F+++G V + ++ D+ T + RGFGFVT + +D + Sbjct: 127 EDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 172
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 43.9 bits (102), Expect = 2e-04 Identities = 24/59 (40%), Positives = 36/59 (61%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 + L + + GK+ D V+ D + RSRGFGFVT +S E+D A+AA S++GR + Sbjct: 34 EESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARP-HSIDGRVV 91 Score = 41.6 bits (96), Expect = 0.001 Identities = 16/47 (34%), Positives = 28/47 (59%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 ++ L + F E+GK+ ++ DR +G+ RGFGFVT + +D + Sbjct: 124 EEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 43.9 bits (102), Expect = 2e-04 Identities = 19/59 (32%), Positives = 38/59 (64%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 254 ++ +FS++G++V+ +V D+ TG+S+GF F+ Q A+ +G ++GR +RV+ Sbjct: 52 IICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVD 110
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 43.9 bits (102), Expect = 2e-04 Identities = 24/59 (40%), Positives = 36/59 (61%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 + L + + GK+ D V+ D + RSRGFGFVT +S E+D A+AA S++GR + Sbjct: 22 EESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARP-HSIDGRVV 79 Score = 41.6 bits (96), Expect = 0.001 Identities = 16/47 (34%), Positives = 28/47 (59%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 ++ L + F E+GK+ ++ DR +G+ RGFGFVT + +D + Sbjct: 112 EEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 43.9 bits (102), Expect = 2e-04 Identities = 19/59 (32%), Positives = 38/59 (64%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 254 ++ +FS++G++V+ +V D+ TG+S+GF F+ Q A+ +G ++GR +RV+ Sbjct: 52 IICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVD 110
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 43.1 bits (100), Expect = 3e-04 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Frame = -3 Query: 442 DDSRLVELF-SEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +DS L F S + A+++ D TG SR +GFV +S++E A+ + G +GR Sbjct: 194 EDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRP 253 Query: 265 LRVNVA 248 LR++VA Sbjct: 254 LRISVA 259
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 43.1 bits (100), Expect = 3e-04 Identities = 20/60 (33%), Positives = 35/60 (58%) Frame = -3 Query: 421 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEE 242 LFS++G + + + D TG+S+GF +V +E+ A +LD Q +GR L + A++ Sbjct: 329 LFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSLDKQIFQGRLLHILPADK 388 Score = 37.0 bits (84), Expect = 0.022 Identities = 23/63 (36%), Positives = 34/63 (53%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L+ELF G++ RV D +RGF FV +E + A++ L+G L GR L + Sbjct: 733 LLELFGAFGQLKSVRVPKKFDQS-ARGFAFVEFNLMKEAETAMSQLEGVHLLGRRLVMQY 791 Query: 250 AEE 242 AE+ Sbjct: 792 AEQ 794 Score = 34.7 bits (78), Expect = 0.11 Identities = 15/39 (38%), Positives = 26/39 (66%) Frame = -3 Query: 358 SRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEE 242 S GFGFV ++E+ + AI+ LDG L+G L++ ++ + Sbjct: 662 SMGFGFVEFRTKEQANVAISTLDGHVLDGHKLQLKLSHK 700
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 43.1 bits (100), Expect = 3e-04 Identities = 21/60 (35%), Positives = 33/60 (55%) Frame = -3 Query: 424 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 +LFS +G++ + V D TG+S+GF +V E +A LD Q +GR L + A+ Sbjct: 319 QLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIELDKQIFQGRLLHILPAD 378 Score = 35.4 bits (80), Expect = 0.065 Identities = 23/61 (37%), Positives = 31/61 (50%) Frame = -3 Query: 424 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 ELFS G++ RV D +RGF FV E ++A+ L G L GR L + AE Sbjct: 730 ELFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPSEAENAMDQLQGVHLLGRRLVMQYAE 788 Query: 244 E 242 + Sbjct: 789 Q 789 Score = 33.5 bits (75), Expect = 0.25 Identities = 13/43 (30%), Positives = 26/43 (60%) Frame = -3 Query: 370 DTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEE 242 D S GFGF+ ++E+ IAA+DG ++G +++ ++ + Sbjct: 653 DKKLSMGFGFIEFRTKEQAGAVIAAMDGAVIDGHKIQLKISHK 695 Score = 31.6 bits (70), Expect = 0.93 Identities = 15/53 (28%), Positives = 31/53 (58%) Frame = -3 Query: 403 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 ++ D ++V D+ +G SR F F+ S+++ DAI +G ++ + V +A+ Sbjct: 36 QITDVKIVKDK-SGNSRRFAFIGYRSEQDAFDAIEYFNGSFIDTARIEVAMAK 87
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 43.1 bits (100), Expect = 3e-04 Identities = 23/64 (35%), Positives = 35/64 (54%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 D L +F + G V D ++++ S+GFGFVTM ++ + A L G +EGR + Sbjct: 166 DPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERPQDAERARQELHGSMIEGRKIE 223 Query: 259 VNVA 248 VN A Sbjct: 224 VNCA 227
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 42.7 bits (99), Expect = 4e-04 Identities = 16/47 (34%), Positives = 28/47 (59%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 ++ L E F E+GK+ ++ D+ +G+ RGFGFVT + +D + Sbjct: 112 EEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIV 158 Score = 39.7 bits (91), Expect = 0.003 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 4/59 (6%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA----LDGQSLE 275 + L + + G++ D V+ D + RSRGFGFVT + E+D A++A +DG+ +E Sbjct: 22 EESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSARPHTIDGRVVE 80
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 42.7 bits (99), Expect = 4e-04 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA----LDGQSLE 275 D L + F + G++VD V+ D T RSRGFGF+T + +DDA A +DG+ +E Sbjct: 30 DESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNARPHKVDGRVVE 88
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 42.7 bits (99), Expect = 4e-04 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 4/59 (6%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA----LDGQSLE 275 D L F + G + D V+ D +T RSRGFGFVT A+ E++D A+ A +DG+ +E Sbjct: 26 DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVDGRVVE 84 Score = 36.2 bits (82), Expect = 0.038 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 ++ L + F ++GK+ ++ DR +G+ RGF FVT +D + Sbjct: 116 EEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIV 162
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 42.7 bits (99), Expect = 4e-04 Identities = 26/63 (41%), Positives = 36/63 (57%) Frame = -3 Query: 433 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 254 +L E+FS G VV A ++ D+D G+SRG G VT E AI+ +GQ L R + V Sbjct: 217 KLKEVFSMAGVVVRADILEDKD-GKSRGIGIVTFEQSIEAVQAISMFNGQLLFDRPMHVK 275 Query: 253 VAE 245 + E Sbjct: 276 MDE 278
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 42.7 bits (99), Expect = 4e-04 Identities = 24/52 (46%), Positives = 32/52 (61%) Frame = -3 Query: 400 VVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 V R+V D T RSRGFG+V + + L A+ AL G+ L GR +R+ VAE Sbjct: 118 VTSIRLVIDPLTERSRGFGYVEFETADTLSAAL-ALSGEDLMGRPVRITVAE 168
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 42.4 bits (98), Expect = 5e-04 Identities = 22/66 (33%), Positives = 36/66 (54%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 DD R +LFS +G++ + + D TG+S+GF +V + + A LD Q +GR L Sbjct: 344 DDFR--KLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVELDKQIFQGRLL 401 Query: 262 RVNVAE 245 + A+ Sbjct: 402 HILPAD 407 Score = 34.3 bits (77), Expect = 0.14 Identities = 22/61 (36%), Positives = 31/61 (50%) Frame = -3 Query: 424 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 ELFS G++ RV D +RGF FV +E ++A+ L G L GR L + E Sbjct: 770 ELFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEFVE 828 Query: 244 E 242 + Sbjct: 829 Q 829 Score = 30.4 bits (67), Expect = 2.1 Identities = 12/37 (32%), Positives = 24/37 (64%) Frame = -3 Query: 358 SRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 248 S GFGF ++E+ + I+A++G L+G L++ ++ Sbjct: 696 SMGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLS 732
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 42.0 bits (97), Expect = 7e-04 Identities = 20/51 (39%), Positives = 33/51 (64%) Frame = -3 Query: 397 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 V AR+V DR+TG S+GFGFV S+E+ A A++ ++G + ++ A+ Sbjct: 598 VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 648 Score = 32.7 bits (73), Expect = 0.42 Identities = 12/38 (31%), Positives = 25/38 (65%) Frame = -3 Query: 364 GRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 G+S+G+ F+ AS E+ +A+ + + +EGR +R+ + Sbjct: 522 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLEL 559
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 42.0 bits (97), Expect = 7e-04 Identities = 20/51 (39%), Positives = 33/51 (64%) Frame = -3 Query: 397 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 V AR+V DR+TG S+GFGFV S+E+ A A++ ++G + ++ A+ Sbjct: 597 VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 647 Score = 35.0 bits (79), Expect = 0.084 Identities = 14/44 (31%), Positives = 28/44 (63%) Frame = -3 Query: 382 VYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 V G+S+G+ F+ AS E+ +A+ + + + +EGRA+R+ + Sbjct: 515 VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 558
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 42.0 bits (97), Expect = 7e-04 Identities = 20/51 (39%), Positives = 33/51 (64%) Frame = -3 Query: 397 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 V AR+V DR+TG S+GFGFV S+E+ A A++ ++G + ++ A+ Sbjct: 592 VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 642
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 42.0 bits (97), Expect = 7e-04 Identities = 20/51 (39%), Positives = 33/51 (64%) Frame = -3 Query: 397 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 V AR+V DR+TG S+GFGFV S+E+ A A++ ++G + ++ A+ Sbjct: 595 VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 645 Score = 35.0 bits (79), Expect = 0.084 Identities = 14/44 (31%), Positives = 28/44 (63%) Frame = -3 Query: 382 VYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 V G+S+G+ F+ AS E+ +A+ + + + +EGRA+R+ + Sbjct: 513 VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 556
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 42.0 bits (97), Expect = 7e-04 Identities = 26/63 (41%), Positives = 36/63 (57%) Frame = -3 Query: 433 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 254 +L E+FS G VV A ++ D+D G+SRG G VT E AI+ +GQ L R + V Sbjct: 218 KLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 276 Query: 253 VAE 245 + E Sbjct: 277 MDE 279
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 42.0 bits (97), Expect = 7e-04 Identities = 26/63 (41%), Positives = 36/63 (57%) Frame = -3 Query: 433 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 254 +L E+FS G VV A ++ D+D G+SRG G VT E AI+ +GQ L R + V Sbjct: 178 KLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 236 Query: 253 VAE 245 + E Sbjct: 237 MDE 239
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 42.0 bits (97), Expect = 7e-04 Identities = 22/66 (33%), Positives = 36/66 (54%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V + L+E FS+ G V A ++ D+ +G+ RGFGFV + + D A A + ++G Sbjct: 109 VAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA-AVVKFHPIQGHR 167 Query: 265 LRVNVA 248 + V A Sbjct: 168 VEVKKA 173 Score = 39.3 bits (90), Expect = 0.004 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%) Frame = -3 Query: 418 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA----ALDGQSLE 275 F G + D VV + T RSR FGFVT ++ EE D A+A A+DG ++E Sbjct: 27 FEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVE 78
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 42.0 bits (97), Expect = 7e-04 Identities = 21/61 (34%), Positives = 32/61 (52%) Frame = -3 Query: 424 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 +LFS G++ + V D TG+S+GF +V + +A LD Q +GR L + E Sbjct: 363 KLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVELDKQIFQGRLLHILPGE 422 Query: 244 E 242 E Sbjct: 423 E 423 Score = 35.4 bits (80), Expect = 0.065 Identities = 23/61 (37%), Positives = 32/61 (52%) Frame = -3 Query: 424 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 ELF+ G++ RV D +RGF FV +E ++A+ L G L GR L + AE Sbjct: 781 ELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKEAENAMDQLHGVHLLGRRLVMQYAE 839 Query: 244 E 242 E Sbjct: 840 E 840 Score = 33.5 bits (75), Expect = 0.25 Identities = 15/52 (28%), Positives = 31/52 (59%) Frame = -3 Query: 400 VVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 + D +++ DR+ G SR FGF+ ++E+ DA+ +G + + V++A+ Sbjct: 43 ITDVKILRDRN-GESRRFGFIGYRNEEDAFDAVEYFNGSFINTSKIEVSMAK 93 Score = 33.1 bits (74), Expect = 0.32 Identities = 13/37 (35%), Positives = 25/37 (67%) Frame = -3 Query: 358 SRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 248 S GFGFV ++E+ + IAA+DG ++G +++ ++ Sbjct: 708 SMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLS 744
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 42.0 bits (97), Expect = 7e-04 Identities = 20/65 (30%), Positives = 36/65 (55%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 ++ L E F+ G V + ++YD + R RGFGF+T ++ +D A+ + + G+ + Sbjct: 127 ETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVE 185 Query: 259 VNVAE 245 V AE Sbjct: 186 VKRAE 190 Score = 39.3 bits (90), Expect = 0.004 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 4/52 (7%) Frame = -3 Query: 418 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA----LDGQSLE 275 FS++G+VVD ++ D+ T +SRGFGFV + +A+ LDG++++ Sbjct: 30 FSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNID 81
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 42.0 bits (97), Expect = 7e-04 Identities = 20/51 (39%), Positives = 33/51 (64%) Frame = -3 Query: 397 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 V AR+V DR+TG S+GFGFV S+E+ A A++ ++G + ++ A+ Sbjct: 596 VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 646 Score = 35.0 bits (79), Expect = 0.084 Identities = 14/44 (31%), Positives = 28/44 (63%) Frame = -3 Query: 382 VYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 V G+S+G+ F+ AS E+ +A+ + + + +EGRA+R+ + Sbjct: 514 VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 557
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 42.0 bits (97), Expect = 7e-04 Identities = 20/51 (39%), Positives = 33/51 (64%) Frame = -3 Query: 397 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 V AR+V DR+TG S+GFGFV S+E+ A A++ ++G + ++ A+ Sbjct: 595 VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 645 Score = 32.7 bits (73), Expect = 0.42 Identities = 12/38 (31%), Positives = 25/38 (65%) Frame = -3 Query: 364 GRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 G+S+G+ F+ AS E+ +A+ + + +EGR +R+ + Sbjct: 519 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLEL 556
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 41.6 bits (96), Expect = 0.001 Identities = 16/56 (28%), Positives = 33/56 (58%) Frame = -3 Query: 421 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 254 LFS++G ++ +++YD+ G G+GF++ + I L+G+++ G L +N Sbjct: 214 LFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKELNGRTVNGSTLFIN 269
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 41.6 bits (96), Expect = 0.001 Identities = 18/60 (30%), Positives = 35/60 (58%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 + ++++L S G V++ ++++D TGRS+G+ F+ E A+ L+G L R L+ Sbjct: 31 EEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLK 90
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 41.6 bits (96), Expect = 0.001 Identities = 22/66 (33%), Positives = 40/66 (60%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V+D L + FSE+ +V +VV DR+ G++RGFGFV+ ++ A +G+ + R Sbjct: 41 VNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRP 99 Query: 265 LRVNVA 248 ++++ A Sbjct: 100 VKLSRA 105
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 41.6 bits (96), Expect = 0.001 Identities = 20/65 (30%), Positives = 36/65 (55%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 ++ L E F + G V + ++YD + R RGFGF+T ++ +D A+ + + G+ + Sbjct: 126 ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVE 184 Query: 259 VNVAE 245 V AE Sbjct: 185 VKRAE 189 Score = 39.3 bits (90), Expect = 0.004 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 4/52 (7%) Frame = -3 Query: 418 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA----LDGQSLE 275 FS++G+VVD ++ D+ T +SRGFGFV + +A+ LDG++++ Sbjct: 30 FSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNID 81
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 41.6 bits (96), Expect = 0.001 Identities = 20/65 (30%), Positives = 36/65 (55%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 ++ L E F + G V + ++YD + R RGFGF+T ++ +D A+ + + G+ + Sbjct: 126 ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVE 184 Query: 259 VNVAE 245 V AE Sbjct: 185 VKRAE 189 Score = 39.3 bits (90), Expect = 0.004 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 4/52 (7%) Frame = -3 Query: 418 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA----LDGQSLE 275 FS++G+VVD ++ D+ T +SRGFGFV + +A+ LDG++++ Sbjct: 30 FSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNID 81
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 41.2 bits (95), Expect = 0.001 Identities = 20/65 (30%), Positives = 33/65 (50%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 D+ + + F G +VD +V D++TG+ RGF FV + +D + Q L G+ + Sbjct: 134 DEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQ-LNGKMV 192 Query: 262 RVNVA 248 V A Sbjct: 193 DVKKA 197 Score = 39.7 bits (91), Expect = 0.003 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA----LDGQSLE 275 D L F + G +VD V+ D T RSRGFGF+T + +D+A + +DG+ +E Sbjct: 44 DENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVE 102
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 41.2 bits (95), Expect = 0.001 Identities = 17/47 (36%), Positives = 27/47 (57%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 D+ L E F + G++V +V D+DTG+ RGF F+ + +D I Sbjct: 127 DEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKII 173 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 4/59 (6%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA----LDGQSLE 275 D L F + G +VD V+ D T RSRGFGF+T + +D+A A +DG+++E Sbjct: 37 DDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVE 95
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 41.2 bits (95), Expect = 0.001 Identities = 20/40 (50%), Positives = 25/40 (62%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 311 L + FS+ G+VVD + D TGRSRGFGFV E +D Sbjct: 113 LKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 41.2 bits (95), Expect = 0.001 Identities = 20/40 (50%), Positives = 25/40 (62%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 311 L + FS+ G+VVD + D TGRSRGFGFV E +D Sbjct: 113 LKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 41.2 bits (95), Expect = 0.001 Identities = 20/59 (33%), Positives = 35/59 (59%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 254 ++ +FSE+G VD + D +TG S+GF ++ Q A+ L+G + GRAL+++ Sbjct: 47 ILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNLNGFKIGGRALKID 105
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 41.2 bits (95), Expect = 0.001 Identities = 17/35 (48%), Positives = 25/35 (71%) Frame = -3 Query: 424 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 320 + F + GKV DA +++D+ T R RGFGFVT S++ Sbjct: 127 QYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161 Score = 38.1 bits (87), Expect = 0.010 Identities = 20/44 (45%), Positives = 26/44 (59%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 299 L E F + G+V + V+ D T RSRGFGFVT Q +D +A Sbjct: 36 LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79
>IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 RNA-binding| subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 274 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/62 (35%), Positives = 34/62 (54%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 ++S EL + VV +++TG+SRG FVT +S+E + A+ LDG+ L Sbjct: 204 ENSLREELLFPFAPIPRVSVVRNKETGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLIL 263 Query: 262 RV 257 RV Sbjct: 264 RV 265
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 41.2 bits (95), Expect = 0.001 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDA-RVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 ++ L+ LF K V RV+ D TG SR FGFV ++E A+ + G+ +GRAL Sbjct: 205 EADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRAL 264 Query: 262 RVNVA 248 RV A Sbjct: 265 RVAYA 269
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 40.8 bits (94), Expect = 0.002 Identities = 24/105 (22%), Positives = 45/105 (42%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V + ++ E+F++ G V ++V D +TG +G+GF E A+ L+ L R Sbjct: 18 VSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRK 77 Query: 265 LRVNVAEEXXXXXXXXRYIWRCTTTRLLRKRHDSTPDTGLDPIII 131 +RV Y R + H+S+ ++ P ++ Sbjct: 78 IRVEFPSNDPRRNQSYEYTERTDRYMEQQNAHESSYNSRFIPPVL 122
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 40.8 bits (94), Expect = 0.002 Identities = 17/63 (26%), Positives = 36/63 (57%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 +S+L F +G + +VY++ +G+ RG+ F+ + ++ A DG+ ++GR + Sbjct: 116 ESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 175 Query: 259 VNV 251 V+V Sbjct: 176 VDV 178
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/66 (31%), Positives = 34/66 (51%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 +S L +FS GK+ + V +D S+GF +V A + +A LDG+ +GR L Sbjct: 308 ESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRNLDGKIFQGRLLH 367 Query: 259 VNVAEE 242 + A + Sbjct: 368 ILPASQ 373 Score = 34.7 bits (78), Expect = 0.11 Identities = 22/60 (36%), Positives = 30/60 (50%) Frame = -3 Query: 421 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEE 242 LF +G++ RV D +RGFGF S E ++A+ AL L GR L + A E Sbjct: 716 LFGAYGQLRSVRVPKKFDRS-ARGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFANE 774
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 40.8 bits (94), Expect = 0.002 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM---ASQEE-LDDAIAALDGQSLE 275 L + F++ G+VVD + D +TGRSRGFGF+ AS E+ LD LDG+ ++ Sbjct: 84 LKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID 139
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 40.8 bits (94), Expect = 0.002 Identities = 17/57 (29%), Positives = 30/57 (52%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 269 D LV+L +GK+V + + D+ T + +G+GFV S A+ AL ++ + Sbjct: 71 DQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQ 127 Score = 33.9 bits (76), Expect = 0.19 Identities = 17/57 (29%), Positives = 31/57 (54%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 275 +D+ L + G+V+ R++ D +G SRG GF M S E+ + I +G+ ++ Sbjct: 148 MDEQELEGMLKPFGQVISTRILRDT-SGASRGVGFARMESTEKCEAIITHFNGKYIK 203
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 40.8 bits (94), Expect = 0.002 Identities = 16/38 (42%), Positives = 27/38 (71%) Frame = -3 Query: 424 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 311 + F + GKV DA +++D+ T R RGFGFVT +++ ++ Sbjct: 128 QYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVE 165 Score = 37.7 bits (86), Expect = 0.013 Identities = 18/43 (41%), Positives = 26/43 (60%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 L + FS+ G++ + V+ D T RSRGFGFVT A +D + Sbjct: 37 LRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 40.8 bits (94), Expect = 0.002 Identities = 17/33 (51%), Positives = 24/33 (72%) Frame = -3 Query: 418 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 320 F + GKV DA +++D+ T R RGFGFVT S++ Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161 Score = 38.1 bits (87), Expect = 0.010 Identities = 20/44 (45%), Positives = 26/44 (59%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 299 L E F + G+V + V+ D T RSRGFGFVT Q +D +A Sbjct: 36 LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 40.8 bits (94), Expect = 0.002 Identities = 17/33 (51%), Positives = 24/33 (72%) Frame = -3 Query: 418 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 320 F + GKV DA +++D+ T R RGFGFVT S++ Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161 Score = 38.1 bits (87), Expect = 0.010 Identities = 20/44 (45%), Positives = 26/44 (59%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 299 L E F + G+V + V+ D T RSRGFGFVT Q +D +A Sbjct: 36 LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 40.8 bits (94), Expect = 0.002 Identities = 25/63 (39%), Positives = 36/63 (57%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 VD+S L E F + G +V R+V + TG RGFG+V + + + A+ L+ L GR Sbjct: 296 VDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLAL-KLNNSELMGRK 354 Query: 265 LRV 257 LRV Sbjct: 355 LRV 357
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 40.8 bits (94), Expect = 0.002 Identities = 16/38 (42%), Positives = 27/38 (71%) Frame = -3 Query: 424 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 311 + F + GKV DA +++D+ T R RGFGFVT +++ ++ Sbjct: 128 QYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVE 165 Score = 37.7 bits (86), Expect = 0.013 Identities = 18/43 (41%), Positives = 26/43 (60%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 L + FS+ G++ + V+ D T RSRGFGFVT A +D + Sbjct: 37 LRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 40.8 bits (94), Expect = 0.002 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 3/60 (5%) Frame = -3 Query: 424 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALD---GQSLEGRALRVN 254 ELF+++G + ++V D T RSRGF F+ E+L DA AA D G ++GR +RV+ Sbjct: 115 ELFNKYGPIERIQMVIDAQTQRSRGFCFIYF---EKLSDARAAKDSCSGIEVDGRRIRVD 171
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 4/56 (7%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFV----TMASQEELDDAIAALDGQSLE 275 L + F++ G+VVD + D +TGRSRGFGF+ + + ++ LD LDG+ ++ Sbjct: 91 LKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVID 146
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 40.4 bits (93), Expect = 0.002 Identities = 24/63 (38%), Positives = 36/63 (57%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 ++DS L E F + G +V R+V + TG RGFG+V + + + A+ L+ L GR Sbjct: 302 IEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLAL-KLNNSELMGRK 360 Query: 265 LRV 257 LRV Sbjct: 361 LRV 363
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 40.4 bits (93), Expect = 0.002 Identities = 20/40 (50%), Positives = 24/40 (60%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 311 L + FS+ G VVD + D TGRSRGFGFV E +D Sbjct: 111 LKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVD 150
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Frame = -3 Query: 442 DDSRLVEL---FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEG 272 DD+R +L F +G +VD V D T R RGF +V + +DA+ LD + + G Sbjct: 19 DDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICG 78 Query: 271 RALRVNVAE 245 R + + A+ Sbjct: 79 RQIEIQFAQ 87
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Frame = -3 Query: 442 DDSRLVEL---FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEG 272 DD+R +L F +G +VD V D T R RGF +V + +DA+ LD + + G Sbjct: 19 DDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICG 78 Query: 271 RALRVNVAE 245 R + + A+ Sbjct: 79 RQIEIQFAQ 87
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 40.4 bits (93), Expect = 0.002 Identities = 17/63 (26%), Positives = 35/63 (55%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 +S+L F +G + +VY + +G+ RG+ F+ + ++ A DG+ ++GR + Sbjct: 116 ESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 175 Query: 259 VNV 251 V+V Sbjct: 176 VDV 178
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 40.4 bits (93), Expect = 0.002 Identities = 17/57 (29%), Positives = 31/57 (54%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 269 D LV+L +GK+V + + D+ T + +G+GFV S A++AL ++ + Sbjct: 75 DQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQ 131 Score = 35.4 bits (80), Expect = 0.065 Identities = 17/57 (29%), Positives = 31/57 (54%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 275 +D+ L + G+V+ R++ D +G SRG GF M S E+ + I +G+ ++ Sbjct: 152 MDEQELENMLKPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVIGHFNGKFIK 207
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 40.4 bits (93), Expect = 0.002 Identities = 17/57 (29%), Positives = 30/57 (52%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 269 D LV+L +GK+V + + D+ T + +G+GFV S A+ AL ++ + Sbjct: 69 DQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ 125 Score = 33.9 bits (76), Expect = 0.19 Identities = 17/57 (29%), Positives = 31/57 (54%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 275 +D+ L + G+V+ R++ D +G SRG GF M S E+ + I +G+ ++ Sbjct: 146 MDEQELEGMLKPFGQVISTRILRDT-SGTSRGVGFARMESTEKCEAIITHFNGKYIK 201
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 40.4 bits (93), Expect = 0.002 Identities = 17/63 (26%), Positives = 35/63 (55%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 +S+L F +G + +VY + +G+ RG+ F+ + ++ A DG+ ++GR + Sbjct: 116 ESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 175 Query: 259 VNV 251 V+V Sbjct: 176 VDV 178
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 40.0 bits (92), Expect = 0.003 Identities = 23/80 (28%), Positives = 37/80 (46%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V + L F G + D ++ D ++ R RGF F+ E+ AI ++ L GR Sbjct: 17 VTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNMNDSELCGRT 76 Query: 265 LRVNVAEEXXXXXXXXRYIW 206 +RVN+A+ + IW Sbjct: 77 IRVNLAKPVRVKEDSFKPIW 96
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 40.0 bits (92), Expect = 0.003 Identities = 20/65 (30%), Positives = 38/65 (58%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 ++S L + FS++G V + ++V DR G S+G+GFVT +QE+ + + + + + L Sbjct: 45 NESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKL 103 Query: 262 RVNVA 248 + A Sbjct: 104 NIGPA 108
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 40.0 bits (92), Expect = 0.003 Identities = 20/65 (30%), Positives = 38/65 (58%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 ++S L + FS++G V + ++V DR G S+G+GFVT +QE+ + + + + + L Sbjct: 45 NESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKL 103 Query: 262 RVNVA 248 + A Sbjct: 104 NIGPA 108
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 40.0 bits (92), Expect = 0.003 Identities = 17/57 (29%), Positives = 31/57 (54%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 269 D LV+L +GK+V + + D+ T + +G+GFV S A++AL ++ + Sbjct: 75 DQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKANGVQAQ 131 Score = 35.8 bits (81), Expect = 0.049 Identities = 18/57 (31%), Positives = 31/57 (54%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 275 +D+ L + G+V+ RV+ D +G SRG GF M S E+ + I +G+ ++ Sbjct: 152 MDEQELENMLKPFGQVISTRVLRD-SSGASRGVGFARMESTEKCEAVIGHFNGKFIK 207
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 39.7 bits (91), Expect = 0.003 Identities = 22/58 (37%), Positives = 30/58 (51%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 257 L +LFS +G + + D T + +GF FVT E A A +DGQ +GR L V Sbjct: 416 LEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 473 Score = 31.2 bits (69), Expect = 1.2 Identities = 15/46 (32%), Positives = 26/46 (56%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 + R +LF+ G + D + + +D G+ R FGF+ S+EE A+ Sbjct: 15 EERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQAAL 59 Score = 29.3 bits (64), Expect = 4.6 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Frame = -3 Query: 424 ELFSEHGKVVDARVVYDRD-TGRSRGFGFVTMASQEELDDAIAAL-DGQSLEGRALRVNV 251 ELFS G++ R+ TG RGFGFV ++++ A AL L GR L + Sbjct: 842 ELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEW 901 Query: 250 AE 245 A+ Sbjct: 902 AD 903
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 39.7 bits (91), Expect = 0.003 Identities = 24/58 (41%), Positives = 34/58 (58%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 257 L ++F E G V+ A V D + G SRGFG V +++E+ AI +G +EGR L V Sbjct: 235 LKDMFKECGHVLRADVELDFN-GFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEV 291 Score = 37.4 bits (85), Expect = 0.017 Identities = 22/58 (37%), Positives = 29/58 (50%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 257 L ELF G+VV+A ++ + G RG G V E + DAI+ DG R L V Sbjct: 138 LKELFGTVGEVVEADIITSK--GHHRGMGTVEFTKNESVQDAISKFDGALFMDRKLMV 193
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 39.7 bits (91), Expect = 0.003 Identities = 15/47 (31%), Positives = 27/47 (57%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 ++ L E F E+GK+ ++ D+ +G+ RGF FVT + +D + Sbjct: 112 EEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIV 158 Score = 38.1 bits (87), Expect = 0.010 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA----ALDGQSLE 275 + L + + G + D V+ D + RSRGFGFVT + E+D A+A +DG+ +E Sbjct: 22 EESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMATRPHTIDGRVVE 80
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 39.7 bits (91), Expect = 0.003 Identities = 22/62 (35%), Positives = 36/62 (58%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L + F + G V DA++V D+ +GRS+G +V ++ + AI AL G+ L G + V + Sbjct: 256 LYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI-ALSGKRLLGLPVIVQL 314 Query: 250 AE 245 E Sbjct: 315 TE 316 Score = 32.3 bits (72), Expect = 0.55 Identities = 21/97 (21%), Positives = 40/97 (41%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 D + +F G + + D D RS+GFG++ + +A+ ++G L GR +R Sbjct: 353 DEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMR 411 Query: 259 VNVAEEXXXXXXXXRYIWRCTTTRLLRKRHDSTPDTG 149 V + + + R T ++R + G Sbjct: 412 VCLGNDKFTTETTSSMLKRFDETLARQERSQPSQRNG 448
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 39.3 bits (90), Expect = 0.004 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA----ALDGQSLE 275 L F G ++D V+ + ++GRSRGFGFVT A ++ + LDG++++ Sbjct: 23 LSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTID 78 Score = 37.4 bits (85), Expect = 0.017 Identities = 14/45 (31%), Positives = 29/45 (64%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 311 V ++ L F+ +GKV + ++YD++ +SRGFGF++ + ++ Sbjct: 107 VTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 39.3 bits (90), Expect = 0.004 Identities = 19/82 (23%), Positives = 39/82 (47%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 D L +FS GK++ V+ D+ TG S + F+ ++ ++A + +D ++ R + Sbjct: 266 DEDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFEDKKSCEEAYSKMDSVLIDDRRIH 325 Query: 259 VNVAEEXXXXXXXXRYIWRCTT 194 V+ ++ +WR T Sbjct: 326 VDFSQSVSKLSD----VWRSET 343
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 38.9 bits (89), Expect = 0.006 Identities = 20/58 (34%), Positives = 31/58 (53%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 257 L +LFS++G + + D T + +GF F+T E A + +DGQ +GR L V Sbjct: 418 LEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHV 475 Score = 30.8 bits (68), Expect = 1.6 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 305 + R +LF+ G + D + + +D G+ R FGF+ S+EE A Sbjct: 15 EERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQKA 58 Score = 28.9 bits (63), Expect = 6.0 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Frame = -3 Query: 424 ELFSEHGKVVDARVVYDRD-TGRSRGFGFVTMASQEELDDAIAAL-DGQSLEGRALRVNV 251 ELFS G++ R+ TG RGFGFV ++++ A AL L GR L + Sbjct: 850 ELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEW 909 Query: 250 AE 245 A+ Sbjct: 910 AD 911
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 38.9 bits (89), Expect = 0.006 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE-GRAL 263 + LV LF + G + D R++ D +G++RG+ F+T +E +A+ D + G+ L Sbjct: 178 EDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHL 237 Query: 262 RVNVA 248 V ++ Sbjct: 238 GVCIS 242
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 38.9 bits (89), Expect = 0.006 Identities = 18/61 (29%), Positives = 32/61 (52%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 +S L +FS+ GK+ + V +D + S+GF +V + A LDG+ +GR + Sbjct: 314 ESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYKELDGKHFQGRLMH 373 Query: 259 V 257 + Sbjct: 374 I 374 Score = 34.7 bits (78), Expect = 0.11 Identities = 22/60 (36%), Positives = 30/60 (50%) Frame = -3 Query: 421 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEE 242 LF +G++ RV D +RGFGF S E ++A+ AL L GR L + A E Sbjct: 721 LFGAYGQLRSVRVPKKFDRS-ARGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFANE 779 Score = 34.3 bits (77), Expect = 0.14 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGR-----SRGFGFVTMASQEELDDAIAALDGQSLE 275 + R E+F V AR+ D R S GFGFV ++ + A+AA+DG L+ Sbjct: 610 NERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQAQAALAAMDGYKLD 669 Query: 274 GRALRVNVAEE 242 L V + + Sbjct: 670 QHELVVRASNK 680
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 38.9 bits (89), Expect = 0.006 Identities = 21/63 (33%), Positives = 37/63 (58%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V++S + + F + G ++ R+V D+ TG +GFG+V + + + A+ L+ L GR Sbjct: 298 VEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL-KLNNSELMGRK 356 Query: 265 LRV 257 LRV Sbjct: 357 LRV 359
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 38.5 bits (88), Expect = 0.008 Identities = 23/63 (36%), Positives = 33/63 (52%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V + L ELF + G + + DR+ G+ + FGFV E + AIA L+G L GR Sbjct: 21 VREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 79 Query: 265 LRV 257 + V Sbjct: 80 INV 82
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 38.5 bits (88), Expect = 0.008 Identities = 18/65 (27%), Positives = 38/65 (58%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 +++ L + FS++G V + ++V DR G S+G+GF+T +QE+ + + + + + L Sbjct: 45 NENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQEAEKLNYKDKKL 103 Query: 262 RVNVA 248 + A Sbjct: 104 NIGPA 108
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 38.5 bits (88), Expect = 0.008 Identities = 17/45 (37%), Positives = 28/45 (62%) Frame = -3 Query: 418 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQ 284 F +HG V++ ++ D+ TG+ +G FV A+ ++ D AI AL Q Sbjct: 140 FEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQ 184 Score = 30.4 bits (67), Expect = 2.1 Identities = 19/51 (37%), Positives = 31/51 (60%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDG 287 + + E+F + G V D ++ D + +SRG GFV +S+E A+AA+DG Sbjct: 224 EKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKE---TAMAAIDG 270
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 38.5 bits (88), Expect = 0.008 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 6/97 (6%) Frame = -3 Query: 424 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALD---GQSLEGRALRVN 254 ELF++ G + ++V D T RSRGF F+ E L DA A D G ++GR +RV+ Sbjct: 123 ELFNKFGPIERIQMVIDAHTHRSRGFCFIYF---ENLGDARVAKDACTGMEVDGRRIRVD 179 Query: 253 VA-EEXXXXXXXXRYIWRCTTT--RLLRKRHDSTPDT 152 + + Y+ R + R R+R ST DT Sbjct: 180 YSITQRAHTPTPGVYMGRPSRPLGRRSRERDYSTRDT 216
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 38.5 bits (88), Expect = 0.008 Identities = 20/63 (31%), Positives = 36/63 (57%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 +++ L +LF + G+V+ + D+ TG +GF FVT S+++ AIA L+ + Sbjct: 187 MNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELNDIRMYHMV 246 Query: 265 LRV 257 L+V Sbjct: 247 LKV 249
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 38.5 bits (88), Expect = 0.008 Identities = 20/84 (23%), Positives = 38/84 (45%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 D L +FS GK++ V+ D+ TG S + F+ SQ++ + A + G ++ + Sbjct: 261 DEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFESQKDCEQAYFKMQGVLIDDHRIH 320 Query: 259 VNVAEEXXXXXXXXRYIWRCTTTR 188 V+ ++ WR T + Sbjct: 321 VDFSQSVSKLSES----WRDATVK 340
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 38.5 bits (88), Expect = 0.008 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 D+ L E F + G VV +++ D+ TG+ RGF FV + +D AI Sbjct: 135 DEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181 Score = 38.5 bits (88), Expect = 0.008 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA----ALDGQSLEG 272 + L + + GKVVD V+ D T RSRGFGF+T +D A +DG+++E Sbjct: 45 EENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHIIDGKTVEA 104 Query: 271 R 269 + Sbjct: 105 K 105
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 38.5 bits (88), Expect = 0.008 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Frame = -3 Query: 445 VDDSRLVELF-SEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 269 V++ + LF S + A+++ D T SRG+GFV + + A+A + GQ R Sbjct: 197 VNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDR 256 Query: 268 ALRVNVA 248 +RV +A Sbjct: 257 PIRVGLA 263
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 38.1 bits (87), Expect = 0.010 Identities = 17/46 (36%), Positives = 28/46 (60%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 + LV LF + G + D R++ D TG +RG+ FVT ++E +A+ Sbjct: 85 EDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 130
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 38.1 bits (87), Expect = 0.010 Identities = 17/46 (36%), Positives = 28/46 (60%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 + LV LF + G + D R++ D TG +RG+ FVT ++E +A+ Sbjct: 175 EDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 220
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 38.1 bits (87), Expect = 0.010 Identities = 17/46 (36%), Positives = 28/46 (60%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 302 + LV LF + G + D R++ D TG +RG+ FVT ++E +A+ Sbjct: 175 EDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 220
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 38.1 bits (87), Expect = 0.010 Identities = 21/64 (32%), Positives = 38/64 (59%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 ++ L +FS +G V +++ DR G S+G+GFVT +++E A DG+ + R + Sbjct: 46 EADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEAQRLQA--DGECVVLRDRK 102 Query: 259 VNVA 248 +N+A Sbjct: 103 LNIA 106
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 37.7 bits (86), Expect = 0.013 Identities = 21/59 (35%), Positives = 33/59 (55%) Frame = -3 Query: 421 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 LFS++GK+ + +V + FGFV M S+ E D+AI L L G A+ V +++ Sbjct: 21 LFSQYGKISECDIV--------KNFGFVHMDSKSEADEAIQNLHHYMLNGMAMNVEMSK 71
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 37.7 bits (86), Expect = 0.013 Identities = 22/64 (34%), Positives = 37/64 (57%) Frame = -3 Query: 433 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 254 +L ELFS+ G V VV ++ + RGFG+VT + E++ A+ + + EG + V Sbjct: 18 QLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI--TTFEGCKINVT 75 Query: 253 VAEE 242 VA++ Sbjct: 76 VAKK 79 Score = 35.4 bits (80), Expect = 0.065 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALD------GQS 281 ++ L EL + G++ R+V DT S+G F +QE + A G Sbjct: 346 EEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASPENEAGGLK 405 Query: 280 LEGRALRVNVA 248 L+GR L+V++A Sbjct: 406 LDGRQLKVDLA 416 Score = 33.1 bits (74), Expect = 0.32 Identities = 18/61 (29%), Positives = 34/61 (55%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L +F++ G V++ + D G+ RGFGFV + E A+ ++ + ++GR + V+ Sbjct: 129 LKTVFAQFGAVLEVNIPRKPD-GKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDW 187 Query: 250 A 248 A Sbjct: 188 A 188
>HNRPC_MOUSE (Q9Z204) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /| hnRNP C2) Length = 313 Score = 37.4 bits (85), Expect = 0.017 Identities = 21/68 (30%), Positives = 35/68 (51%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V S + +FS++GK+V V +GF FV ++ A+A DG+ + G+ Sbjct: 28 VKKSDVEAIFSKYGKIVGCSV--------HKGFAFVQYVNERNARAAVAGEDGRMIAGQV 79 Query: 265 LRVNVAEE 242 L +N+A E Sbjct: 80 LDINLAAE 87
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 37.4 bits (85), Expect = 0.017 Identities = 24/64 (37%), Positives = 35/64 (54%) Frame = -3 Query: 433 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 254 +L E+FS G V A + D+D G+SRG G VT E AI+ +GQ L R + V Sbjct: 248 KLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVK 306 Query: 253 VAEE 242 + ++ Sbjct: 307 MDDK 310
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 37.4 bits (85), Expect = 0.017 Identities = 24/64 (37%), Positives = 35/64 (54%) Frame = -3 Query: 433 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 254 +L E+FS G V A + D+D G+SRG G VT E AI+ +GQ L R + V Sbjct: 239 KLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVK 297 Query: 253 VAEE 242 + ++ Sbjct: 298 MDDK 301
>HNRPC_XENLA (P19600) Heterogeneous nuclear ribonucleoprotein C (hnRNP core| protein C) Length = 282 Score = 37.4 bits (85), Expect = 0.017 Identities = 19/60 (31%), Positives = 33/60 (55%) Frame = -3 Query: 421 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEE 242 +FS++GK+V V +GF FV +++ A+A DG+ + G+ L +N+A E Sbjct: 37 IFSKYGKIVGCSV--------HKGFAFVQFSNERTARTAVAGEDGRMIAGQVLDINLAAE 88
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 37.4 bits (85), Expect = 0.017 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 296 + L + F ++G++ V D TGRSRGF F+ + E +D AA Sbjct: 69 EKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAA 116 Score = 33.5 bits (75), Expect = 0.25 Identities = 15/66 (22%), Positives = 33/66 (50%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 + D + F + G +V+ + +D+ + +GF F+T S++ + D + Q + G+ Sbjct: 147 ISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT-PKQKIAGKE 205 Query: 265 LRVNVA 248 + V A Sbjct: 206 VDVKRA 211
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 37.4 bits (85), Expect = 0.017 Identities = 21/66 (31%), Positives = 37/66 (56%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 D+RL E FS+ G V D +++ R G SR FGFV S++E A+ + ++ + Sbjct: 15 DARLREHFSQKGAVTDVKLM-RRPDGTSRKFGFVGYRSEQEAQQALDYFNRTFIDTSRIS 73 Query: 259 VNVAEE 242 + +A++ Sbjct: 74 IELAKK 79 Score = 32.7 bits (73), Expect = 0.42 Identities = 16/58 (27%), Positives = 26/58 (44%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 257 ++ F G V + D+ T S+G FV+ + A A DG + +GR L + Sbjct: 330 ILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRAKDGSTFQGRLLHL 387 Score = 31.6 bits (70), Expect = 0.93 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = -3 Query: 424 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 263 +LFS G++ R+ D +RGFGFV ++ E A+ AL L GR L Sbjct: 737 DLFSSQGQLKSVRLPKKFDN-TTRGFGFVEYSTVREAQSAMEALKHTHLLGRHL 789
>IF39_YEAST (P06103) Eukaryotic translation initiation factor 3 90 kDa subunit| (eIF3 p90) (Cell cycle regulation and translation initiation protein) Length = 763 Score = 37.4 bits (85), Expect = 0.017 Identities = 19/52 (36%), Positives = 28/52 (53%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 275 L LFS+ GKVV+ D TG+++GF FV S + I + G+ L+ Sbjct: 99 LTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 150
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 37.4 bits (85), Expect = 0.017 Identities = 20/59 (33%), Positives = 35/59 (59%) Frame = -3 Query: 424 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 248 ELF ++G VV+ +V R +GFV + ++ DAI L+G+ ++G+ L+V V+ Sbjct: 104 ELFQKYGTVVECDIV--------RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVS 154 Score = 34.7 bits (78), Expect = 0.11 Identities = 21/64 (32%), Positives = 36/64 (56%) Frame = -3 Query: 436 SRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 257 + L LF ++G VV+ VV + +GFV M ++++ DAI L+G +L A++V Sbjct: 21 TELRALFEKYGTVVECDVV--------KNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKV 72 Query: 256 NVAE 245 A+ Sbjct: 73 EAAK 76
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 37.4 bits (85), Expect = 0.017 Identities = 20/65 (30%), Positives = 34/65 (52%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 ++ L ELF G + + D+ TG+S+GF F++ +E+ AIA + G + L Sbjct: 252 ETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 311 Query: 259 VNVAE 245 V A+ Sbjct: 312 VEWAK 316
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 37.4 bits (85), Expect = 0.017 Identities = 20/65 (30%), Positives = 34/65 (52%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 ++ L ELF G + + D+ TG+S+GF F++ +E+ AIA + G + L Sbjct: 252 ETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 311 Query: 259 VNVAE 245 V A+ Sbjct: 312 VEWAK 316
>HNRPC_HUMAN (P07910) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /| hnRNP C2) Length = 306 Score = 37.4 bits (85), Expect = 0.017 Identities = 21/68 (30%), Positives = 35/68 (51%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V S + +FS++GK+V V +GF FV ++ A+A DG+ + G+ Sbjct: 28 VKKSDVEAIFSKYGKIVGCSV--------HKGFAFVQYVNERNARAAVAGEDGRMIAGQV 79 Query: 265 LRVNVAEE 242 L +N+A E Sbjct: 80 LDINLAAE 87
>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) Length = 273 Score = 37.0 bits (84), Expect = 0.022 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 6/91 (6%) Frame = -3 Query: 376 DRDTGRSRGFGFVTMASQEELDDAIAALDGQS---LEGRALRVNVAEEXXXXXXXXRYIW 206 D T + RGF FV EE++DA++A+D + + GR +RVNVA R +W Sbjct: 4 DYQTEKHRGFAFVEF---EEVEDAMSAIDNMNESEIFGRTIRVNVARPVRIREGWSRPVW 60 Query: 205 RCTTTRLLRKRHDSTPDTGL---DPIIILPS 122 + K++ S P G +P I+ PS Sbjct: 61 ---SDENWLKKYGSAPLEGRKLDEPDIVNPS 88
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 37.0 bits (84), Expect = 0.022 Identities = 18/63 (28%), Positives = 32/63 (50%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V + + ++F ++G++ D +GR F FV + +DA+ A DG +GR Sbjct: 20 VREKEVEDIFHKYGRIK----YVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRR 75 Query: 265 LRV 257 +RV Sbjct: 76 IRV 78
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 37.0 bits (84), Expect = 0.022 Identities = 22/64 (34%), Positives = 37/64 (57%) Frame = -3 Query: 433 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 254 +L ELFS+ G V VV ++ + RGFG+VT + E++ A+ + + EG + V Sbjct: 18 QLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI--TTFEGCKIDVT 75 Query: 253 VAEE 242 VA++ Sbjct: 76 VAKK 79 Score = 35.4 bits (80), Expect = 0.065 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Frame = -3 Query: 442 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALD------GQS 281 ++ L E+ + G + RVV DT S+G F +QE +AA G Sbjct: 336 EEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASPEAEGGGLK 395 Query: 280 LEGRALRVNVA 248 L+GR L+V++A Sbjct: 396 LDGRQLKVDLA 406 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/61 (27%), Positives = 32/61 (52%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 251 L +F+ +G V++ + D G+ RGF FV + E A+ + + ++GR + V+ Sbjct: 129 LKAVFTHYGTVLEVNIPKKPD-GKMRGFAFVQFKNLLEAGKALKGANMKEIKGRTVAVDW 187 Query: 250 A 248 A Sbjct: 188 A 188
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 37.0 bits (84), Expect = 0.022 Identities = 16/63 (25%), Positives = 33/63 (52%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 +S++ F +G + +V D+ T + +G+ F+ ++ A DGQ ++GR + Sbjct: 151 ESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVL 210 Query: 259 VNV 251 V+V Sbjct: 211 VDV 213
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 37.0 bits (84), Expect = 0.022 Identities = 22/58 (37%), Positives = 30/58 (51%) Frame = -3 Query: 430 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 257 L E FS+ GKVV A ++ R G RG G V + +++D AI DG R + V Sbjct: 152 LTEFFSQIGKVVRADIITSR--GHHRGMGTVEFTNSDDVDRAIRQYDGAFFMDRKIFV 207
>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 36.6 bits (83), Expect = 0.029 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 3/66 (4%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDT---GRSRGFGFVTMASQEELDDAIAALDGQSLEGR 269 +S+L F +G + +VY++ + G+ RG+ F+ + ++ A DG+ ++GR Sbjct: 116 ESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR 175 Query: 268 ALRVNV 251 + V+V Sbjct: 176 RVLVDV 181
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 36.6 bits (83), Expect = 0.029 Identities = 17/56 (30%), Positives = 30/56 (53%) Frame = -3 Query: 424 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 257 +LFS++G++ + + + TG+ +GF V E A A DG+ +GR L + Sbjct: 319 QLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEAQDGKIFQGRLLHI 374 Score = 33.9 bits (76), Expect = 0.19 Identities = 21/60 (35%), Positives = 30/60 (50%) Frame = -3 Query: 424 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 +LF G + RV + SRGF F S +E + A++AL G L GR L + A+ Sbjct: 721 KLFGAFGSLKTVRVP-KKFNSESRGFAFAEYVSAKEAEHAMSALQGTHLLGRRLVLQYAQ 779 Score = 33.5 bits (75), Expect = 0.25 Identities = 15/37 (40%), Positives = 24/37 (64%) Frame = -3 Query: 358 SRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 248 S GFGFV +S+E + A A+DG L+G L++ ++ Sbjct: 650 SMGFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKIS 686
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 36.2 bits (82), Expect = 0.038 Identities = 21/66 (31%), Positives = 32/66 (48%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 ++D ++ EL + G + +V D TG S+G+ F D AIA L+G L + Sbjct: 270 LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 329 Query: 265 LRVNVA 248 L V A Sbjct: 330 LLVQRA 335
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 36.2 bits (82), Expect = 0.038 Identities = 21/66 (31%), Positives = 32/66 (48%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 ++D ++ EL + G + +V D TG S+G+ F D AIA L+G L + Sbjct: 270 LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 329 Query: 265 LRVNVA 248 L V A Sbjct: 330 LLVQRA 335
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 36.2 bits (82), Expect = 0.038 Identities = 15/65 (23%), Positives = 35/65 (53%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALR 260 D L +FS GK++ +V+ D++TG S + F+ ++E ++ A + ++ + Sbjct: 257 DEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIH 316 Query: 259 VNVAE 245 V+ ++ Sbjct: 317 VDFSQ 321
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 35.8 bits (81), Expect = 0.049 Identities = 19/63 (30%), Positives = 34/63 (53%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V + L ELF + G V+ ++ D+D G+ + F FV + + A+ L+G L GR Sbjct: 21 VTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLLNGIKLYGRP 79 Query: 265 LRV 257 +++ Sbjct: 80 IKI 82
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 35.8 bits (81), Expect = 0.049 Identities = 17/64 (26%), Positives = 37/64 (57%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V ++ + F + G++ ++YDR+TG +G+G++ S + A+ L+G L+G+ Sbjct: 75 VTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKAL-QLNGGELKGKK 133 Query: 265 LRVN 254 + V+ Sbjct: 134 IAVS 137
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 35.8 bits (81), Expect = 0.049 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE-GRAL 263 + L+ L + GK+ + R++ D + G +RG+ FVT ++++E +AI L+ + GR L Sbjct: 69 EDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAKNAIKQLNNYEIRTGRLL 127 Query: 262 RV 257 V Sbjct: 128 GV 129
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 35.8 bits (81), Expect = 0.049 Identities = 22/65 (33%), Positives = 35/65 (53%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V D+ + ELF+E G + A V YDR +GRS G V + + A+ +G L+GR Sbjct: 115 VSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 173 Query: 265 LRVNV 251 + + + Sbjct: 174 MNIQL 178
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 35.8 bits (81), Expect = 0.049 Identities = 22/65 (33%), Positives = 35/65 (53%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V D+ + ELF+E G + A V YDR +GRS G V + + A+ +G L+GR Sbjct: 116 VSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 174 Query: 265 LRVNV 251 + + + Sbjct: 175 MNIQL 179
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 35.8 bits (81), Expect = 0.049 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Frame = -3 Query: 439 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSL-EGRAL 263 + L+ L + GK+ + R++ D + G +RG+ FVT ++++E +AI L+ + GR L Sbjct: 69 EDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLL 127 Query: 262 RV 257 V Sbjct: 128 GV 129
>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein homolog) Length = 247 Score = 35.8 bits (81), Expect = 0.049 Identities = 19/48 (39%), Positives = 30/48 (62%) Frame = -3 Query: 388 RVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 R+V D+DT + +GF +V + L +A+ DG L R+LRV++AE Sbjct: 70 RLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 116
>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein) Length = 247 Score = 35.8 bits (81), Expect = 0.049 Identities = 19/48 (39%), Positives = 30/48 (62%) Frame = -3 Query: 388 RVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 245 R+V D+DT + +GF +V + L +A+ DG L R+LRV++AE Sbjct: 70 RLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 116
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 35.4 bits (80), Expect = 0.065 Identities = 21/66 (31%), Positives = 32/66 (48%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 ++D ++ EL GK+ +V D TG S+G+ F D +IA L+G L + Sbjct: 218 LNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKK 277 Query: 265 LRVNVA 248 L V A Sbjct: 278 LIVQRA 283
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 35.4 bits (80), Expect = 0.065 Identities = 19/63 (30%), Positives = 34/63 (53%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V + L ELF + G V+ ++ D+D G+ + F FV + + A+ L+G L GR Sbjct: 21 VTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLLNGIKLFGRP 79 Query: 265 LRV 257 +++ Sbjct: 80 IKI 82
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 35.4 bits (80), Expect = 0.065 Identities = 18/68 (26%), Positives = 33/68 (48%) Frame = -3 Query: 445 VDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRA 266 V D L + F G +V R+ D+G+ +GF F+ ++E + + + + GR Sbjct: 250 VTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDKSCRKIAGRP 309 Query: 265 LRVNVAEE 242 LR+ E+ Sbjct: 310 LRMEYGED 317 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,948,408 Number of Sequences: 219361 Number of extensions: 1311381 Number of successful extensions: 5051 Number of sequences better than 10.0: 340 Number of HSP's better than 10.0 without gapping: 4642 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5025 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
