Clone Name | rbah61i08 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ005286.1|HVH005286 Hordeum vulgare cv. Haisa mRNA for cp31AHv protein Length = 1318 Score = 835 bits (421), Expect = 0.0 Identities = 442/448 (98%), Gaps = 1/448 (0%) Strand = Plus / Minus Query: 1 atatgcgtagtatgtn-gacaaaacttttgaattgcatcgacagattgtgaacatggaag 59 ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1266 atatgcgtattatgtcagacaaaacttttgaattgcatcgacagattgtgaacatggaag 1207 Query: 60 caacaggcagatagcaaaagagaaaaacaaggagagagaggagacatgcatggcacaagg 119 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1206 caacaggcagatagcaaaagagaaaaacaaggagagagaggagacttgcatggcacaagg 1147 Query: 120 atggatgggaggatgatgatgggatctaagccggtatcgggcgtgctatcgtgtctctta 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1146 atggatgggaggatgatgatgggatctaagccggtatcgggcgtgctatcgtgtctctta 1087 Query: 180 cgcagcaatcttgtcgtagtgcaccgccaaatataccttcattagaacctcctcggtggc 239 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1086 cgcagcaatcttgtcgtattgcaccgccaaatataccttcattagaacctcctcggtggc 1027 Query: 240 cgctcctccgcgacgttgacccttagggcacgcccctccaagctctgtccatcgagggca 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1026 cgctcctccgcgacgttgacccttagggcacgcccctccaagctctgtccatcgagggca 967 Query: 300 gcgatggcgtcatccagttcctcctgcgacgccattgtcacgaaaccgaagcctcgtgag 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 966 gcgatggcgtcatccagttcctcctgcgacgccattgtcacgaaaccgaagcctcgtgag 907 Query: 360 cgcccagtgtctctgtcgtagacgaccctggcatcgaccactttgccatgctcgctgaac 419 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 906 cgcccagtgtctctgtcgtagacgaccttggcatcgaccactttgccatgctcgctgaac 847 Query: 420 agctccaccaacctagagtcgtccactt 447 |||||||||||||||||||||||||||| Sbjct: 846 agctccaccaacctagagtcgtccactt 819
>emb|AJ234452.1|HVU234452 Hordeum vulgare partial mRNA; clone cMWG0781 Length = 350 Score = 507 bits (256), Expect = e-141 Identities = 272/276 (98%), Gaps = 1/276 (0%) Strand = Plus / Plus Query: 172 gtctcttacgcagcaatcttgtcgtagtgcaccgccaaatataccttcattagaacctcc 231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8 gtctcttacgcagcaatcttgtcgtagtgcaccgccaaatataccttcattagaacctcc 67 Query: 232 tcggtggccgctcctccgcgacgttgacccttagggcacgcccctccaagctctgtccat 291 ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 68 tcggtggccgcgtctccgcgacgttgacccttagggcacgccc-tccaagctctgtccat 126 Query: 292 cgagggcagcgatggcgtcatccagttcctcctgcgacgccattgtcacgaaaccgaagc 351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127 cgagggcagcgatggcgtcatccagttcctcctgcgacgccattgtcacgaaaccgaagc 186 Query: 352 ctcgtgagcgcccagtgtctctgtcgtagacgaccctggcatcgaccactttgccatgct 411 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 187 ctcgtgggcgcccagtgtctctgtcgtagacgaccctggcatcgaccactttgccatgct 246 Query: 412 cgctgaacagctccaccaacctagagtcgtccactt 447 |||||||||||||||||||||||||||||||||||| Sbjct: 247 cgctgaacagctccaccaacctagagtcgtccactt 282
>dbj|D38485.1| Triticum aestivum mRNA for Ps16 protein, complete cds Length = 1161 Score = 404 bits (204), Expect = e-110 Identities = 279/304 (91%) Strand = Plus / Minus Query: 144 tctaagccggtatcgggcgtgctatcgtgtctcttacgcagcaatcttgtcgtagtgcac 203 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 997 tctaagccggtattgggcgtgctatcgtgtctcttacgcagcaatcttgtcgtagtccac 938 Query: 204 cgccaaatataccttcattagaacctcctcggtggccgctcctccgcgacgttgaccctt 263 | |||||| |||||||||||||||||| ||||||||||||||||| ||||| |||| Sbjct: 937 catcaaatacaccttcattagaacctccgtggtggccgctcctccgcaacgttcacccgc 878 Query: 264 agggcacgcccctccaagctctgtccatcgagggcagcgatggcgtcatccagttcctcc 323 || ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | Sbjct: 877 agagcacgcccctccaagctctgtccatcgagggcagcgatggcatcatcaagttccggc 818 Query: 324 tgcgacgccattgtcacgaaaccgaagcctcgtgagcgcccagtgtctctgtcgtagacg 383 || || ||||||||||||||||| || || ||||||||||||||||||||||||||||| Sbjct: 817 tgtgatgccattgtcacgaaaccaaatccccgtgagcgcccagtgtctctgtcgtagaca 758 Query: 384 accctggcatcgaccactttgccatgctcgctgaacagctccaccaacctagagtcgtcc 443 |||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 757 accctggcatcgacaactttgccgtgctcgctgaacagctctaccaacctagagtcgtcc 698 Query: 444 actt 447 |||| Sbjct: 697 actt 694 Score = 161 bits (81), Expect = 2e-36 Identities = 106/113 (93%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 17 gacaaaacttttgaattgcatcgacagattgtgaacatggaagcaacaggcagatagcaa 76 ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct: 1113 gacaaaacttttgaattgcatcgacagattgagaacgtggaagcaacaggcagatagcaa 1054 Query: 77 aagagaaaaaca-aggagagagaggagacatgcatggcacaaggatggatggg 128 |||||||||||| ||||||||||||| || ||||||||||||||||||||| Sbjct: 1053 aagagaaaaacactggagagagaggaggcagacatggcacaaggatggatggg 1001
>dbj|AK104354.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-H01, full insert sequence Length = 1196 Score = 157 bits (79), Expect = 4e-35 Identities = 181/215 (84%) Strand = Plus / Minus Query: 233 cggtggccgctcctccgcgacgttgacccttagggcacgcccctccaagctctgtccatc 292 |||||| |||||||| || || || || || || ||||| || ||||| ||||||||||| Sbjct: 980 cggtggtcgctcctctgcaacattcactctcagcgcacggccatccaaactctgtccatc 921 Query: 293 gagggcagcgatggcgtcatccagttcctcctgcgacgccattgtcacgaaaccgaagcc 352 |||||| || || ||||| |||| ||| ||||| | ||||||||| || ||||| || || Sbjct: 920 gagggctgcaatagcgtcgtccaattcttcctgtgtcgccattgttacaaaaccaaatcc 861 Query: 353 tcgtgagcgcccagtgtctctgtcgtagacgaccctggcatcgaccactttgccatgctc 412 |||||| |||||||| |||||||| || || || ||||| ||||| |||||||||||||| Sbjct: 860 tcgtgaacgcccagtttctctgtcatacacaactctggcgtcgactactttgccatgctc 801 Query: 413 gctgaacagctccaccaacctagagtcgtccactt 447 ||||||||||| |||||||||||||| ||||||| Sbjct: 800 gctgaacagctgtaccaacctagagtcatccactt 766
>dbj|AK069121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007A14, full insert sequence Length = 1289 Score = 157 bits (79), Expect = 4e-35 Identities = 181/215 (84%) Strand = Plus / Minus Query: 233 cggtggccgctcctccgcgacgttgacccttagggcacgcccctccaagctctgtccatc 292 |||||| |||||||| || || || || || || ||||| || ||||| ||||||||||| Sbjct: 981 cggtggtcgctcctctgcaacattcactctcagcgcacggccatccaaactctgtccatc 922 Query: 293 gagggcagcgatggcgtcatccagttcctcctgcgacgccattgtcacgaaaccgaagcc 352 |||||| || || ||||| |||| ||| ||||| | ||||||||| || ||||| || || Sbjct: 921 gagggctgcaatagcgtcgtccaattcttcctgtgtcgccattgttacaaaaccaaatcc 862 Query: 353 tcgtgagcgcccagtgtctctgtcgtagacgaccctggcatcgaccactttgccatgctc 412 |||||| |||||||| |||||||| || || || ||||| ||||| |||||||||||||| Sbjct: 861 tcgtgaacgcccagtttctctgtcatacacaactctggcgtcgactactttgccatgctc 802 Query: 413 gctgaacagctccaccaacctagagtcgtccactt 447 ||||||||||| |||||||||||||| ||||||| Sbjct: 801 gctgaacagctgtaccaacctagagtcatccactt 767
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 143 bits (72), Expect = 6e-31 Identities = 141/164 (85%) Strand = Plus / Plus Query: 284 ctgtccatcgagggcagcgatggcgtcatccagttcctcctgcgacgccattgtcacgaa 343 ||||||||||||||| || || ||||| |||| ||| ||||| | ||||||||| || || Sbjct: 22204205 ctgtccatcgagggctgcaatagcgtcgtccaattcttcctgtgtcgccattgttacaaa 22204264 Query: 344 accgaagcctcgtgagcgcccagtgtctctgtcgtagacgaccctggcatcgaccacttt 403 ||| || |||||||| |||||||| |||||||| || || || ||||| ||||| ||||| Sbjct: 22204265 accaaatcctcgtgaacgcccagtttctctgtcatacacaactctggcgtcgactacttt 22204324 Query: 404 gccatgctcgctgaacagctccaccaacctagagtcgtccactt 447 |||||||||||||||||||| |||||||||||||| ||||||| Sbjct: 22204325 gccatgctcgctgaacagctgtaccaacctagagtcatccactt 22204368
>dbj|AP006171.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0070E11 Length = 142855 Score = 143 bits (72), Expect = 6e-31 Identities = 141/164 (85%) Strand = Plus / Plus Query: 284 ctgtccatcgagggcagcgatggcgtcatccagttcctcctgcgacgccattgtcacgaa 343 ||||||||||||||| || || ||||| |||| ||| ||||| | ||||||||| || || Sbjct: 24103 ctgtccatcgagggctgcaatagcgtcgtccaattcttcctgtgtcgccattgttacaaa 24162 Query: 344 accgaagcctcgtgagcgcccagtgtctctgtcgtagacgaccctggcatcgaccacttt 403 ||| || |||||||| |||||||| |||||||| || || || ||||| ||||| ||||| Sbjct: 24163 accaaatcctcgtgaacgcccagtttctctgtcatacacaactctggcgtcgactacttt 24222 Query: 404 gccatgctcgctgaacagctccaccaacctagagtcgtccactt 447 |||||||||||||||||||| |||||||||||||| ||||||| Sbjct: 24223 gccatgctcgctgaacagctgtaccaacctagagtcatccactt 24266
>dbj|AP006170.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0042B15 Length = 157981 Score = 143 bits (72), Expect = 6e-31 Identities = 141/164 (85%) Strand = Plus / Plus Query: 284 ctgtccatcgagggcagcgatggcgtcatccagttcctcctgcgacgccattgtcacgaa 343 ||||||||||||||| || || ||||| |||| ||| ||||| | ||||||||| || || Sbjct: 125698 ctgtccatcgagggctgcaatagcgtcgtccaattcttcctgtgtcgccattgttacaaa 125757 Query: 344 accgaagcctcgtgagcgcccagtgtctctgtcgtagacgaccctggcatcgaccacttt 403 ||| || |||||||| |||||||| |||||||| || || || ||||| ||||| ||||| Sbjct: 125758 accaaatcctcgtgaacgcccagtttctctgtcatacacaactctggcgtcgactacttt 125817 Query: 404 gccatgctcgctgaacagctccaccaacctagagtcgtccactt 447 |||||||||||||||||||| |||||||||||||| ||||||| Sbjct: 125818 gccatgctcgctgaacagctgtaccaacctagagtcatccactt 125861
>gb|M74566.1|MZENBPAA Zea mays nucleic acid-binding protein (NBP) Length = 1251 Score = 137 bits (69), Expect = 3e-29 Identities = 177/213 (83%) Strand = Plus / Minus Query: 235 gtggccgctcctccgcgacgttgacccttagggcacgcccctccaagctctgtccatcga 294 ||||||||||||| || || || |||| | |||||| || ||||| ||||||||||| | Sbjct: 1021 gtggccgctcctctgcaacattcacccgcaaggcacggccatccaaactctgtccatcaa 962 Query: 295 gggcagcgatggcgtcatccagttcctcctgcgacgccattgtcacgaaaccgaagcctc 354 ||||||| || || ||||||| ||| |||||||| ||||| || || ||||| || || | Sbjct: 961 gggcagcaatagcatcatccaattcgtcctgcgatgccatagtaacaaaaccaaatcccc 902 Query: 355 gtgagcgcccagtgtctctgtcgtagacgaccctggcatcgaccactttgccatgctcgc 414 |||| |||||||| |||| ||| ||||| || |||||||| || ||||| |||||||||| Sbjct: 901 gtgaacgcccagtttctcggtcatagacaactctggcatcaactactttaccatgctcgc 842 Query: 415 tgaacagctccaccaacctagagtcgtccactt 447 |||||| ||||||||| ||||| || ||||||| Sbjct: 841 tgaacaactccaccaatctagaatcatccactt 809
>gb|AY111861.1| Zea mays CL2457_1 mRNA sequence Length = 1273 Score = 129 bits (65), Expect = 8e-27 Identities = 176/213 (82%) Strand = Plus / Minus Query: 235 gtggccgctcctccgcgacgttgacccttagggcacgcccctccaagctctgtccatcga 294 ||||||||||||| || || || |||| | |||||| || ||||| ||||||||||| | Sbjct: 1021 gtggccgctcctctgcaacattcacccgcaaggcacggccatccaaactctgtccatcaa 962 Query: 295 gggcagcgatggcgtcatccagttcctcctgcgacgccattgtcacgaaaccgaagcctc 354 ||||||| || || ||||||| ||| |||||||| ||||| || || ||||| || || | Sbjct: 961 gggcagcaatagcatcatccaattcgtcctgcgatgccatagtaacaaaaccaaatcccc 902 Query: 355 gtgagcgcccagtgtctctgtcgtagacgaccctggcatcgaccactttgccatgctcgc 414 | || |||||||| |||| ||| ||||| || |||||||| || ||||| |||||||||| Sbjct: 901 gcgaacgcccagtttctcggtcatagacaactctggcatcaactactttaccatgctcgc 842 Query: 415 tgaacagctccaccaacctagagtcgtccactt 447 |||||| ||||||||| ||||| || ||||||| Sbjct: 841 tgaacaactccaccaatctagaatcatccactt 809
>emb|Z11488.1|ZMNBPG Z.mays gene for nucleic acid binding protein Length = 3176 Score = 111 bits (56), Expect = 2e-21 Identities = 137/164 (83%) Strand = Plus / Minus Query: 284 ctgtccatcgagggcagcgatggcgtcatccagttcctcctgcgacgccattgtcacgaa 343 ||||||||| |||||||| || || ||||||| ||| |||||||| ||||| || || || Sbjct: 2461 ctgtccatcaagggcagcaatagcatcatccaattcgtcctgcgatgccatagtaacaaa 2402 Query: 344 accgaagcctcgtgagcgcccagtgtctctgtcgtagacgaccctggcatcgaccacttt 403 ||| || || || || |||||||| |||| ||| ||||| || |||||||| || ||||| Sbjct: 2401 accaaatccccgcgaacgcccagtttctcggtcatagacaactctggcatcaactacttt 2342 Query: 404 gccatgctcgctgaacagctccaccaacctagagtcgtccactt 447 |||||||||||||||| ||||||||| ||||| || ||||||| Sbjct: 2341 accatgctcgctgaacaactccaccaatctagaatcatccactt 2298
>gb|BT019263.1| Zea mays clone Contig936.F mRNA sequence Length = 1108 Score = 107 bits (54), Expect = 3e-20 Identities = 138/166 (83%) Strand = Plus / Plus Query: 282 ctctgtccatcgagggcagcgatggcgtcatccagttcctcctgcgacgccattgtcacg 341 ||||||||||| |||||||| || || ||||||| ||| |||||||| ||||| || || Sbjct: 244 ctctgtccatcaagggcagcaatagcatcatccaattcgtcctgcgatgccatagtaaca 303 Query: 342 aaaccgaagcctcgtgagcgcccagtgtctctgtcgtagacgaccctggcatcgaccact 401 ||||| || || ||||| | |||||| |||| ||| ||||| || |||||||| || ||| Sbjct: 304 aaaccaaatccccgtgaacccccagtttctccgtcatagacaactctggcatcaactact 363 Query: 402 ttgccatgctcgctgaacagctccaccaacctagagtcgtccactt 447 || |||||||||||||||| | ||||||| ||||| || ||||||| Sbjct: 364 ttaccatgctcgctgaacaaccccaccaatctagaatcatccactt 409
>gb|AY108263.1| Zea mays PCO100700 mRNA sequence Length = 891 Score = 105 bits (53), Expect = 1e-19 Identities = 107/125 (85%) Strand = Plus / Minus Query: 315 agttcctcctgcgacgccattgtcacgaaaccgaagcctcgtgagcgcccagtgtctctg 374 |||||||||| ||| |||||| || |||||||| ||||||||||||||||| |||||| Sbjct: 517 agttcctcctttgacaccattgatacaaaaccgaatcctcgtgagcgcccagtttctctg 458 Query: 375 tcgtagacgaccctggcatcgaccactttgccatgctcgctgaacagctccaccaaccta 434 |||||||| ||| | ||||| || |||| |||||||||||||||| || ||||| |||| Sbjct: 457 tcgtagacaaccttagcatcaacaacttctccatgctcgctgaacaactgcaccagccta 398 Query: 435 gagtc 439 ||||| Sbjct: 397 gagtc 393
>ref|NM_118610.2| Arabidopsis thaliana RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding AT4G24770 (RBP31) mRNA, complete cds Length = 1254 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 273 ccctccaagctctgtccatcgagggcagcgatggc 307 ||||||||| |||||||||||||||||| |||||| Sbjct: 1006 ccctccaagttctgtccatcgagggcagagatggc 972
>emb|X65255.1|ATRNPT A.thaliana mRNA for RNA-binding protein (RNP-T) Length = 1148 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 273 ccctccaagctctgtccatcgagggcagcgatggc 307 ||||||||| |||||||||||||||||| |||||| Sbjct: 986 ccctccaagttctgtccatcgagggcagagatggc 952
>gb|AY143865.1| Arabidopsis thaliana At4g24770/F22K18_30 mRNA, complete cds Length = 990 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 273 ccctccaagctctgtccatcgagggcagcgatggc 307 ||||||||| |||||||||||||||||| |||||| Sbjct: 935 ccctccaagttctgtccatcgagggcagagatggc 901
>emb|X61108.1|ATRNPDG A.thaliana rnpD gene for RNA binding protein Length = 1090 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 273 ccctccaagctctgtccatcgagggcagcgatggc 307 ||||||||| |||||||||||||||||| |||||| Sbjct: 878 ccctccaagttctgtccatcgagggcagagatggc 844
>gb|AF410318.1|AF410318 Arabidopsis thaliana AT4g24770/F22K18_30 mRNA, complete cds Length = 1171 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 273 ccctccaagctctgtccatcgagggcagcgatggc 307 ||||||||| |||||||||||||||||| |||||| Sbjct: 991 ccctccaagttctgtccatcgagggcagagatggc 957
>dbj|D31713.1|ATHCP31D Arabidopsis thaliana mRNA for chloroplast RNA-binding protein cp31, partial cds Length = 1035 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 273 ccctccaagctctgtccatcgagggcagcgatggc 307 ||||||||| |||||||||||||||||| |||||| Sbjct: 860 ccctccaagttctgtccatcgagggcagagatggc 826
>emb|X63157.1|AT5DBINDN A.thaliana mRNA (5'region) for DNA binding protein homologous to nucleolin Length = 872 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 273 ccctccaagctctgtccatcgagggcagcgatggc 307 ||||||||| |||||||||||||||||| |||||| Sbjct: 695 ccctccaagttctgtccatcgagggcagagatggc 661
>gb|M94554.1|ATHRNABPA Arabidopsis thaliana 31-kDa RNA binding protein (rbp31) mRNA, complete cds Length = 1179 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 273 ccctccaagctctgtccatcgagggcagcgatggc 307 ||||||||| |||||||||||||||||| |||||| Sbjct: 974 ccctccaagttctgtccatcgagggcagagatggc 940
>emb|AJ224324.1|HVH224324 Hordeum vulgare cv. Haisa mRNA for cp31BHv protein Length = 1139 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Minus Query: 342 aaaccgaagcctcgtgagcgcccagtgtctctgtcgtagacgaccctggcatcgaccact 401 ||||| || ||||| || |||||||| |||||||| || |||| | | |||| || ||| Sbjct: 794 aaaccaaatcctcgcgaacgcccagtttctctgtcatacacgatcgtagcattaactact 735 Query: 402 ttgccatgctcgctgaacagctccaccaacctagagtc 439 | |||||||||||||||| | ||||||||||||||| Sbjct: 734 tccccatgctcgctgaacatttgcaccaacctagagtc 697
>emb|X57955.1|SORBP28 S.oleracea mRNA for a 28kD RNA binding protein, involved in plastid mRNA 3' processing Length = 1009 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 276 tccaagctctgtccatcgagggcagcgatggcgtcat 312 |||||| ||||||||||||| ||||| |||||||||| Sbjct: 626 tccaaggtctgtccatcgagagcagcaatggcgtcat 590
>gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P2 map ve014, complete sequence Length = 131743 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Plus Query: 18 acaaaacttttgaattgcatcga 40 ||||||||||||||||||||||| Sbjct: 101487 acaaaacttttgaattgcatcga 101509
>dbj|AP006466.1| Balaenoptera bonaerensis mitochondrial DNA, complete genome Length = 16421 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Minus Query: 117 aggatggatgggaggatgatgat 139 ||||||||||||||||||||||| Sbjct: 8066 aggatggatgggaggatgatgat 8044
>ref|XM_384017.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03841.1) partial mRNA Length = 3492 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Minus Query: 339 acgaaaccgaagcctcgtgagcgcccagtgtctc 372 |||||||||||||||| |||||| ||||| |||| Sbjct: 146 acgaaaccgaagcctcttgagcgaccagtatctc 113
>gb|U38483.1|DCU38483 Dianthus caryophyllus (CEBP-1) mRNA, complete cds Length = 1217 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 273 ccctccaagctctgtccatcgagggc 298 ||||||||||||| |||||||||||| Sbjct: 918 ccctccaagctctctccatcgagggc 893
>ref|XM_801979.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506509.50) partial mRNA Length = 2241 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 agaaaaacaaggagagagagg 100 ||||||||||||||||||||| Sbjct: 644 agaaaaacaaggagagagagg 664
>gb|AC124518.4| Mus musculus BAC clone RP23-392E7 from chromosome 18, complete sequence Length = 222376 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 atagcaaaagagaaaaacaag 90 ||||||||||||||||||||| Sbjct: 199702 atagcaaaagagaaaaacaag 199682
>ref|XM_806442.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506579.90) partial mRNA Length = 2541 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 agaaaaacaaggagagagagg 100 ||||||||||||||||||||| Sbjct: 956 agaaaaacaaggagagagagg 976
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 409 gctcgctgaacagctccacca 429 ||||||||||||||||||||| Sbjct: 24117 gctcgctgaacagctccacca 24097
>gb|AC027281.10| Homo sapiens chromosome 16 clone RP11-424M24, complete sequence Length = 221210 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 118 ggatggatgggaggatgatgatggg 142 ||||||||||| ||||||||||||| Sbjct: 99755 ggatggatgggtggatgatgatggg 99731
>gb|AC102703.16| Mus musculus chromosome 1, clone RP24-442E5, complete sequence Length = 197439 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 67 cagatagcaaaagagaaaaacaagg 91 |||||||||||||| |||||||||| Sbjct: 83143 cagatagcaaaagacaaaaacaagg 83119
>gb|AC067957.7| Homo sapiens BAC clone RP11-82K13 from 2, complete sequence Length = 165373 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 72 agcaaaagagaaaaacaagga 92 ||||||||||||||||||||| Sbjct: 142477 agcaaaagagaaaaacaagga 142497
>gb|AC141633.4| Mus musculus BAC clone RP24-155I4 from chromosome 18, complete sequence Length = 163886 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 70 atagcaaaagagaaaaacaag 90 ||||||||||||||||||||| Sbjct: 152908 atagcaaaagagaaaaacaag 152928
>emb|AL831747.24| Zebrafish DNA sequence from clone CH211-258G4 in linkage group 9, complete sequence Length = 156348 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 79 gagaaaaacaaggagagagaggaga 103 |||||||||||||||||||| |||| Sbjct: 137950 gagaaaaacaaggagagagacgaga 137974
>gb|AC107631.20| Mus musculus chromosome 5, clone RP23-5M20, complete sequence Length = 225977 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 aggatggatgggaggatgatg 137 ||||||||||||||||||||| Sbjct: 44404 aggatggatgggaggatgatg 44424
>gb|AC153492.5| Mus musculus 10 BAC RP23-292N5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 195237 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 75 aaaagagaaaaacaaggagagagag 99 |||||| |||||||||||||||||| Sbjct: 43617 aaaagaaaaaaacaaggagagagag 43593
>emb|AL954135.7| Mouse DNA sequence from clone RP23-231H10 on chromosome 4, complete sequence Length = 100102 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 118 ggatggatgggaggatgatga 138 ||||||||||||||||||||| Sbjct: 10393 ggatggatgggaggatgatga 10413
>gb|AC102381.12| Mus musculus chromosome 8, clone RP24-180I19, complete sequence Length = 190298 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 acaaggagagagaggagaca 105 |||||||||||||||||||| Sbjct: 101080 acaaggagagagaggagaca 101099
>gb|AC161528.14| Mus musculus chromosome 8, clone RP23-369H18, complete sequence Length = 206302 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 acaaggagagagaggagaca 105 |||||||||||||||||||| Sbjct: 184158 acaaggagagagaggagaca 184139
>gb|AC100180.12| Mus musculus chromosome 1, clone RP23-53J14, complete sequence Length = 188055 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 aaaaacaaggagagagaggagaca 105 ||||| |||||||||||||||||| Sbjct: 1314 aaaaaaaaggagagagaggagaca 1337
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 cgagggcagcgatggcgtca 311 |||||||||||||||||||| Sbjct: 693529 cgagggcagcgatggcgtca 693548
>gb|AC132871.7| Mus musculus chromosome 1, clone RP24-387A12, complete sequence Length = 188649 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 aaaaacaaggagagagaggagaca 105 ||||| |||||||||||||||||| Sbjct: 181128 aaaaaaaaggagagagaggagaca 181151
>gb|AC107671.7| Mus musculus chromosome 7, clone RP23-112C18, complete sequence Length = 202894 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 76 aaagagaaaaacaaggagagagag 99 |||||||||||||| ||||||||| Sbjct: 160417 aaagagaaaaacaaagagagagag 160440
>gb|AC120403.8| Mus musculus chromosome 17, clone RP24-405C18, complete sequence Length = 178435 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 agaaaaacaaggagagagaggaga 103 ||||||| |||||||||||||||| Sbjct: 158624 agaaaaaaaaggagagagaggaga 158647
>gb|AC122265.4| Mus musculus chromosome 8 clone RP23-197I18, complete sequence Length = 191473 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 agagaaaaacaaggagagagagga 101 ||||||||||||| |||||||||| Sbjct: 87822 agagaaaaacaagaagagagagga 87799
>emb|CR936975.9| Zebrafish DNA sequence from clone CH211-195B15 in linkage group 3, complete sequence Length = 121737 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 aaagagaaaaacaaggagagagag 99 |||||||||||||| ||||||||| Sbjct: 30481 aaagagaaaaacaacgagagagag 30458
>gb|AC122821.4| Mus musculus BAC clone RP23-201I4 from chromosome 17, complete sequence Length = 220013 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 aaaaacaaggagagagaggagaca 105 |||||||| ||||||||||||||| Sbjct: 212269 aaaaacaaagagagagaggagaca 212246
>gb|AC098878.3| Mus musculus BAC clone RP23-2G23 from 4, complete sequence Length = 209021 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 gagcgcccagtgtctctgtc 376 |||||||||||||||||||| Sbjct: 49009 gagcgcccagtgtctctgtc 49028
>gb|AC154766.2| Mus musculus BAC clone RP24-440G8 from chromosome 17, complete sequence Length = 166224 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 aaaaacaaggagagagaggagaca 105 |||||||| ||||||||||||||| Sbjct: 41877 aaaaacaaagagagagaggagaca 41854
>emb|AL158831.15| Human DNA sequence from clone RP11-564A4 on chromosome 9, complete sequence Length = 162700 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 aaagagaaaaacaaggagagagag 99 ||||||||| |||||||||||||| Sbjct: 4175 aaagagaaacacaaggagagagag 4152
>emb|AL158823.11| Human DNA sequence from clone RP11-151F5 on chromosome 9 Contains part of the AKAP2 (PALM2) gene for A kinase (PRKA) anchor protein 2 (paralemmin 2), a ribosomal protein L21 (RPL21) pseudogene and a CpG island, complete sequence Length = 175558 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 gagagagaggagacatgcat 110 |||||||||||||||||||| Sbjct: 85315 gagagagaggagacatgcat 85334
>emb|AL031257.1|HS796I11 Human DNA sequence from clone RP4-796I11 on chromosome 20q12 Contains the 5' end of the TIX1 gene for triple homeobox 1 and a CpG island, complete sequence Length = 77402 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ccaagctctgtccatcgagg 296 |||||||||||||||||||| Sbjct: 50321 ccaagctctgtccatcgagg 50340
>gb|AC090496.28| Mus musculus strain C57BL/6J clone rp23-469n6 map 14, complete sequence Length = 180338 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 gaggagacatgcatggcaca 116 |||||||||||||||||||| Sbjct: 147897 gaggagacatgcatggcaca 147878
>gb|AC113615.3| Homo sapiens BAC clone RP11-586D19 from 4, complete sequence Length = 164043 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 aaggatggatgggaggatga 135 |||||||||||||||||||| Sbjct: 3937 aaggatggatgggaggatga 3956
>emb|AL161562.2|ATCHRIV62 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 62 Length = 197070 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 284 ctgtccatcgagggcagcgatggc 307 ||||||||||||||||| |||||| Sbjct: 40692 ctgtccatcgagggcagagatggc 40715
>emb|AL035356.1|ATF22K18 Arabidopsis thaliana DNA chromosome 4, BAC clone F22K18 (ESSAII project) Length = 125803 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 ctgtccatcgagggcagcgatggc 307 ||||||||||||||||| |||||| Sbjct: 14816 ctgtccatcgagggcagagatggc 14793
>emb|AL049657.1|ATF6I7 Arabidopsis thaliana DNA chromosome 4, BAC clone F6I7 (ESSA project) Length = 95185 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 284 ctgtccatcgagggcagcgatggc 307 ||||||||||||||||| |||||| Sbjct: 11268 ctgtccatcgagggcagagatggc 11291
>emb|AL844848.12| Mouse DNA sequence from clone RP23-247N5 on chromosome 4 Contains part of the Ptprd gene for receptor type protein tyrosine phosphatase D and a CpG island, complete sequence Length = 199012 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 gagcgcccagtgtctctgtc 376 |||||||||||||||||||| Sbjct: 6399 gagcgcccagtgtctctgtc 6418
>emb|BX511115.14| Zebrafish DNA sequence from clone CH211-101B18 in linkage group 19, complete sequence Length = 169614 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 atagcaaaagagaaaaacaa 89 |||||||||||||||||||| Sbjct: 70461 atagcaaaagagaaaaacaa 70480
>dbj|AB063332.1| Delftia acidovorans plasmid pUO1 DNA, complete sequence Length = 67066 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 ctggcatcgaccactttgcc 406 |||||||||||||||||||| Sbjct: 13867 ctggcatcgaccactttgcc 13848
>dbj|AB049198.1| Delftia acidovorans plasmid pUO1 transposon TnHad2 (carrying TnHad1) genes, complete cds Length = 15604 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 ctggcatcgaccactttgcc 406 |||||||||||||||||||| Sbjct: 12966 ctggcatcgaccactttgcc 12947
>ref|XM_680992.1| PREDICTED: Danio rerio hypothetical protein LOC557848 (LOC557848), mRNA Length = 2963 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 76 aaagagaaaaacaaggagagagag 99 |||||||||||||| ||||||||| Sbjct: 1573 aaagagaaaaacaacgagagagag 1596
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 gtggccgctcctccgcgacg 254 |||||||||||||||||||| Sbjct: 199457 gtggccgctcctccgcgacg 199476
>gb|AC155656.10| Mus musculus 6 BAC RP24-67I3 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 162118 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 aagagaaaaacaaggagaga 96 |||||||||||||||||||| Sbjct: 82273 aagagaaaaacaaggagaga 82254
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 agaaaaacaaggagagagag 99 |||||||||||||||||||| Sbjct: 19391554 agaaaaacaaggagagagag 19391573
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 acaaggagagagaggagaca 105 |||||||||||||||||||| Sbjct: 12990521 acaaggagagagaggagaca 12990540
>emb|BX826929.1|CNS0A47C Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB77ZD03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1170 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 273 ccctccaagctctgtccatcgagggcag 300 ||||||||| ||||||||||||||||| Sbjct: 1010 ccctccaagtactgtccatcgagggcag 983
>gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, complete sequence Length = 186961 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aaacaaggagagagaggaga 103 |||||||||||||||||||| Sbjct: 154988 aaacaaggagagagaggaga 154969
>gb|AC018552.6| Homo sapiens chromosome 16 clone RP11-405F3, complete sequence Length = 152156 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ggatggatgggaggatgatg 137 |||||||||||||||||||| Sbjct: 34383 ggatggatgggaggatgatg 34402
>dbj|AP004890.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0688H12 Length = 139279 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 acaaggagagagaggagaca 105 |||||||||||||||||||| Sbjct: 100164 acaaggagagagaggagaca 100183
>dbj|D31712.1|ATHCP31C Arabidopsis thaliana gene for chloroplast RNA-binding protein cp31, complete cds (exon1, exon2, exon3, exon4) Length = 4135 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 ctgtccatcgagggcagcgatggc 307 ||||||||||||||||| |||||| Sbjct: 2950 ctgtccatcgagggcagagatggc 2927
>ref|NM_211458.1| Eremothecium gossypii AGL271Wp (AGL271W), mRNA Length = 3543 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 gtggccgctcctccgcgacg 254 |||||||||||||||||||| Sbjct: 1722 gtggccgctcctccgcgacg 1741
>emb|AL135838.6|CNS01DVI Human chromosome 14 DNA sequence BAC R-362L22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 187710 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 aaggagagagaggagacatg 107 |||||||||||||||||||| Sbjct: 10323 aaggagagagaggagacatg 10342
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 agaaaaacaaggagagagag 99 |||||||||||||||||||| Sbjct: 19317781 agaaaaacaaggagagagag 19317800
>gb|AC005274.1|AC005274 Homo sapiens chromosome 17, clone hRPK.1090_M_7, complete sequence Length = 205150 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 gcagatagcaaaagagaaaa 85 |||||||||||||||||||| Sbjct: 52351 gcagatagcaaaagagaaaa 52332
>emb|BX119952.3|CNS09S4V Oryza sativa chromosome 12, . BAC OSJNBb0022A20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131975 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 agaaaaacaaggagagagag 99 |||||||||||||||||||| Sbjct: 97245 agaaaaacaaggagagagag 97264
>emb|AL954828.3|CNS08CD4 Oryza sativa chromosome 12, . BAC OSJNBa0022M02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 163490 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 agaaaaacaaggagagagag 99 |||||||||||||||||||| Sbjct: 69248 agaaaaacaaggagagagag 69267
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 gagaaaaacaaggagagaga 98 |||||||||||||||||||| Sbjct: 2654807 gagaaaaacaaggagagaga 2654788
>emb|CR974472.7| Mouse DNA sequence from clone RP24-120D11 on chromosome 17, complete sequence Length = 192085 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 agaaaaacaaggagagagaggaga 103 ||||||| |||||||||||||||| Sbjct: 38549 agaaaaaaaaggagagagaggaga 38572
>emb|AL929072.8| Zebrafish DNA sequence from clone CH211-140B8, complete sequence Length = 160432 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 atagcaaaagagaaaaacaa 89 |||||||||||||||||||| Sbjct: 61983 atagcaaaagagaaaaacaa 62002
>dbj|AP004971.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT45G21, TM0151, complete sequence Length = 109264 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 gcatggcacaaggatggatg 126 |||||||||||||||||||| Sbjct: 35168 gcatggcacaaggatggatg 35149
>emb|AL137012.6| Human DNA sequence from clone RP1-80G16 on chromosome 6. Contains a 60S ribosomal protein L21 (RPL21) pseudogene, ESTs, STSs, GSSs and a CpG island, complete sequence Length = 100948 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 gagagagaggagacatgcat 110 |||||||||||||||||||| Sbjct: 55843 gagagagaggagacatgcat 55862
>emb|AL671917.8| Mouse DNA sequence from clone RP23-217I18 on chromosome 3, complete sequence Length = 172826 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 gaacagctccaccaacctag 435 |||||||||||||||||||| Sbjct: 29736 gaacagctccaccaacctag 29755
>gb|U08467.1|ATU08467 Arabidopsis thaliana chloroplast RNA-binding proteins 1, 2, and 3 gene, complete cds Length = 2716 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 ctgtccatcgagggcagcgatggc 307 ||||||||||||||||| |||||| Sbjct: 2130 ctgtccatcgagggcagagatggc 2107
>emb|AL772336.5| Mouse DNA sequence from clone RP23-180H12 on chromosome 4, complete sequence Length = 154034 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 agagaaaaacaaggagagagagga 101 ||||||| |||||||||||||||| Sbjct: 116025 agagaaagacaaggagagagagga 116048 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,654,003 Number of Sequences: 3902068 Number of extensions: 3654003 Number of successful extensions: 87793 Number of sequences better than 10.0: 87 Number of HSP's better than 10.0 without gapping: 87 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87395 Number of HSP's gapped (non-prelim): 396 length of query: 447 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 425 effective length of database: 17,147,199,772 effective search space: 7287559903100 effective search space used: 7287559903100 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)