Clone Name | rbah61i07 |
---|---|
Clone Library Name | barley_pub |
>PMA1_WHEAT (P83970) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| Length = 951 Score = 128 bits (322), Expect = 7e-30 Identities = 66/67 (98%), Positives = 66/67 (98%) Frame = -1 Query: 498 LQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDT 319 LQA EPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDT Sbjct: 885 LQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDT 944 Query: 318 INQNYTV 298 INQNYTV Sbjct: 945 INQNYTV 951
>PMA4_NICPL (Q03194) Plasma membrane ATPase 4 (EC 3.6.3.6) (Proton pump 4)| Length = 952 Score = 103 bits (256), Expect = 3e-22 Identities = 54/68 (79%), Positives = 61/68 (89%), Gaps = 1/68 (1%) Frame = -1 Query: 498 LQALEPASHT-LFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDID 322 L L+P T LFN+K+SYRELSEIAEQAKRRAE+ARLREL+TLKGHVESVVKLKGLDI+ Sbjct: 885 LHGLQPPEATNLFNEKNSYRELSEIAEQAKRRAEMARLRELHTLKGHVESVVKLKGLDIE 944 Query: 321 TINQNYTV 298 TI Q+YTV Sbjct: 945 TIQQHYTV 952
>PMA5_ARATH (Q9SJB3) ATPase 5, plasma membrane-type (EC 3.6.3.6) (Proton pump 5)| Length = 948 Score = 102 bits (253), Expect = 7e-22 Identities = 51/68 (75%), Positives = 60/68 (88%), Gaps = 1/68 (1%) Frame = -1 Query: 498 LQALEPAS-HTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDID 322 L L+PA + +FN+K+SY ELS+IAEQAKRRAE+ RLRE+NTLKGHVESVVKLKGLDID Sbjct: 881 LHGLQPAEKNNIFNEKNSYSELSQIAEQAKRRAEVVRLREINTLKGHVESVVKLKGLDID 940 Query: 321 TINQNYTV 298 TI Q+YTV Sbjct: 941 TIQQHYTV 948
>PMA9_ARATH (Q42556) ATPase 9, plasma membrane-type (EC 3.6.3.6) (Proton pump 9)| Length = 954 Score = 96.3 bits (238), Expect = 4e-20 Identities = 49/68 (72%), Positives = 59/68 (86%), Gaps = 1/68 (1%) Frame = -1 Query: 498 LQALEPASHT-LFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDID 322 L L+PA + +FNDKS+YRELSEIA+QAKRRAE+ARLRE +TLKGHVESVVK KGLDI+ Sbjct: 887 LHGLQPAQTSDMFNDKSTYRELSEIADQAKRRAEVARLRERHTLKGHVESVVKQKGLDIE 946 Query: 321 TINQNYTV 298 I Q+YT+ Sbjct: 947 AIQQHYTL 954
>PMA1_ARATH (P20649) ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1)| Length = 948 Score = 94.7 bits (234), Expect = 1e-19 Identities = 50/68 (73%), Positives = 55/68 (80%), Gaps = 1/68 (1%) Frame = -1 Query: 498 LQALEPASHT-LFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDID 322 L L+P +F +K SYRELSEIAEQAKRRAEIARLREL+TLKGHVESV KLKGLDID Sbjct: 881 LHGLQPKEDVNIFPEKGSYRELSEIAEQAKRRAEIARLRELHTLKGHVESVAKLKGLDID 940 Query: 321 TINQNYTV 298 T +YTV Sbjct: 941 TAGHHYTV 948
>PMA6_ARATH (Q9SH76) ATPase 6, plasma membrane-type (EC 3.6.3.6) (Proton pump 6)| Length = 949 Score = 94.4 bits (233), Expect = 2e-19 Identities = 47/67 (70%), Positives = 58/67 (86%) Frame = -1 Query: 498 LQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDT 319 L L+P ++F D ++Y ELSEIAEQAK+RAE+ARLRE++TLKGHVESVVKLKGLDID Sbjct: 884 LHGLKPPE-SMFEDTATYTELSEIAEQAKKRAEVARLREVHTLKGHVESVVKLKGLDIDN 942 Query: 318 INQNYTV 298 +NQ+YTV Sbjct: 943 LNQHYTV 949
>PMA8_ARATH (Q9M2A0) ATPase 8, plasma membrane-type (EC 3.6.3.6) (Proton pump 8)| Length = 948 Score = 92.4 bits (228), Expect = 6e-19 Identities = 48/62 (77%), Positives = 53/62 (85%) Frame = -1 Query: 483 PASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNY 304 P +FND + ELSEIAEQAKRRAE+ARLREL+TLKGHVESVVKLKGLDIDTI Q+Y Sbjct: 889 PPPEAMFNDNKN--ELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHY 946 Query: 303 TV 298 TV Sbjct: 947 TV 948
>PMA1_LYCES (P22180) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 956 Score = 89.4 bits (220), Expect = 5e-18 Identities = 43/67 (64%), Positives = 57/67 (85%) Frame = -1 Query: 498 LQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDT 319 L L+ +F++ +++ EL+++AE+AKRRAEIARLREL+TLKGHVESVVKLKGLDI+T Sbjct: 890 LHGLQVPDPKIFSETTNFNELNQLAEEAKRRAEIARLRELHTLKGHVESVVKLKGLDIET 949 Query: 318 INQNYTV 298 I Q+YTV Sbjct: 950 IQQSYTV 956
>PMA2_ARATH (P19456) ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump 2)| Length = 947 Score = 89.4 bits (220), Expect = 5e-18 Identities = 50/68 (73%), Positives = 56/68 (82%), Gaps = 1/68 (1%) Frame = -1 Query: 498 LQALEPASHT-LFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDID 322 L L+P +F +K SYRELSEIAEQAKRRAEIARLREL+TLKGHVESVVKLKGLDI+ Sbjct: 881 LHGLQPKEAVNIFPEKGSYRELSEIAEQAKRRAEIARLRELHTLKGHVESVVKLKGLDIE 940 Query: 321 TINQNYTV 298 T +YTV Sbjct: 941 T-PSHYTV 947
>PMA1_NICPL (Q08435) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 957 Score = 89.0 bits (219), Expect = 6e-18 Identities = 44/67 (65%), Positives = 56/67 (83%) Frame = -1 Query: 498 LQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDT 319 L L+ LF++ +++ EL+++AE+AKRRAEIARLREL+TLKGHVESVVKLKGLDI+T Sbjct: 891 LHGLQVPDTKLFSEATNFNELNQLAEEAKRRAEIARLRELHTLKGHVESVVKLKGLDIET 950 Query: 318 INQNYTV 298 I Q YTV Sbjct: 951 IQQAYTV 957
>PMA3_NICPL (Q08436) Plasma membrane ATPase 3 (EC 3.6.3.6) (Proton pump 3)| Length = 956 Score = 88.2 bits (217), Expect = 1e-17 Identities = 43/67 (64%), Positives = 56/67 (83%) Frame = -1 Query: 498 LQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDT 319 L L+ +F++ +++ EL+++AE+AKRRAEIARLREL+TLKGHVESVVKLKGLDI+T Sbjct: 890 LHGLQVPDPKIFSETTNFNELNQLAEEAKRRAEIARLRELHTLKGHVESVVKLKGLDIET 949 Query: 318 INQNYTV 298 I Q YTV Sbjct: 950 IQQAYTV 956
>PMA11_ARATH (Q9LV11) ATPase 11, plasma membrane-type (EC 3.6.3.6) (Proton pump| 11) Length = 956 Score = 87.4 bits (215), Expect = 2e-17 Identities = 43/67 (64%), Positives = 55/67 (82%) Frame = -1 Query: 498 LQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDT 319 L L+ +F +++ + ELS++AE+AKRRAEIARLREL+TLKGHVESVV+LKGLDI+T Sbjct: 890 LHGLQAPDAKMFPERTHFNELSQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIET 949 Query: 318 INQNYTV 298 I Q YTV Sbjct: 950 IQQAYTV 956
>PMA2_LYCES (P23980) Plasma membrane ATPase 2 (EC 3.6.3.6) (Proton pump 2)| (Fragment) Length = 704 Score = 87.4 bits (215), Expect = 2e-17 Identities = 43/67 (64%), Positives = 56/67 (83%) Frame = -1 Query: 498 LQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDT 319 L L+ LF++ +++ EL+++AE+AKRRAEIAR REL+TLKGHVESVVKLKGLDI+T Sbjct: 638 LHGLQVPDIKLFSEATNFNELNQLAEEAKRRAEIARQRELHTLKGHVESVVKLKGLDIET 697 Query: 318 INQNYTV 298 I Q+YTV Sbjct: 698 IQQSYTV 704
>PMA4_ARATH (Q9SU58) ATPase 4, plasma membrane-type (EC 3.6.3.6) (Proton pump 4)| Length = 960 Score = 86.7 bits (213), Expect = 3e-17 Identities = 43/67 (64%), Positives = 54/67 (80%) Frame = -1 Query: 498 LQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDT 319 L L+ +F D++ EL+++AE+AKRRAEIARLREL+TLKGHVESVV+LKGLDI+T Sbjct: 894 LHGLQAPDTKMFTDRTHVSELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIET 953 Query: 318 INQNYTV 298 I Q YTV Sbjct: 954 IQQAYTV 960
>PMA3_ARATH (P20431) ATPase 3, plasma membrane-type (EC 3.6.3.6) (Proton pump 3)| Length = 948 Score = 82.0 bits (201), Expect = 8e-16 Identities = 43/54 (79%), Positives = 48/54 (88%) Frame = -1 Query: 459 DKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 298 ++ YRELSEIA QAKRRAEIARLREL+TLKGHVESVVKLKGLDI+T +YTV Sbjct: 896 ERGGYRELSEIANQAKRRAEIARLRELHTLKGHVESVVKLKGLDIETAG-HYTV 948
>PMA7_ARATH (Q9LY32) ATPase 7, plasma membrane-type (EC 3.6.3.6) (Proton pump 7)| Length = 961 Score = 65.1 bits (157), Expect = 1e-10 Identities = 33/55 (60%), Positives = 43/55 (78%), Gaps = 1/55 (1%) Frame = -1 Query: 459 DKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIN-QNYTV 298 +++S EL+ +AE+AKRRAEIAR+REL TLKG VES KLKG D++ N NYT+ Sbjct: 907 ERNSATELNNMAEEAKRRAEIARMRELQTLKGKVESAAKLKGYDLEDPNSNNYTI 961
>PMA10_ARATH (Q43128) ATPase 10, plasma membrane-type (EC 3.6.3.6) (Proton pump| 10) Length = 947 Score = 48.9 bits (115), Expect = 7e-06 Identities = 26/53 (49%), Positives = 36/53 (67%) Frame = -1 Query: 456 KSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 298 + S S IAEQ +RRAEIARL E++++ H+ESV+KLK +D I +TV Sbjct: 895 RGSRSRASWIAEQTRRRAEIARLLEVHSVSRHLESVIKLKQIDQRMIRAAHTV 947
>CING_HUMAN (Q9P2M7) Cingulin| Length = 1197 Score = 36.6 bits (83), Expect = 0.038 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Frame = -1 Query: 498 LQALEPASHTLFNDKSSYRELSEIAEQAKRRAE---IARLRELNTLKGHVESVVKLKGLD 328 +Q EPA L D REL E + K+R E R REL LKG ++ V + + Sbjct: 449 VQGPEPAKEVLLKDLLETRELLEEVLEGKQRVEEQLRLRERELTALKGALKEEVASRDQE 508 Query: 327 IDTINQNY 304 ++ + Q Y Sbjct: 509 VEHVRQQY 516
>SMG_DROME (Q23972) Protein Smaug| Length = 999 Score = 30.0 bits (66), Expect = 3.6 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = -3 Query: 313 PKLHRVRNLGIGPNNMTSVLERDWNG 236 PK+H V+ G+GPNN ++ + WNG Sbjct: 769 PKMHHVKPAGVGPNN-GNINKPRWNG 793
>TIM_MOUSE (Q9R1X4) Timeless homolog (mTim)| Length = 1197 Score = 29.6 bits (65), Expect = 4.7 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 5/47 (10%) Frame = -3 Query: 355 VRGEAQGP*HRHHQPKLH-----RVRNLGIGPNNMTSVLERDWNGAP 230 V GE QGP H L R R G+GP + E +WN AP Sbjct: 1112 VPGE-QGPSEEHRTEALRALLSARKRKAGLGPTEEEATGEEEWNSAP 1157
>POLN_SPDV (Q8JJX1) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.1 Length = 2601 Score = 28.9 bits (63), Expect = 7.9 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Frame = -2 Query: 470 HSSTTRAATVSSLRSLSKPREELRLQG*GSSTHSRGTLSPW*SSRALTSTPSTKTTPCEE 291 HS + R+A ++R+ S +R GS+ H G S S R + PS+ +TP Sbjct: 1856 HSRSVRSAP--AMRAASAGARSVRSAQSGSTGHRAGAFSVAGSVRQPSGPPSSVSTPAAI 1913 Query: 290 FGHWTKQHD-IRIGAR 246 G Q D +R+ AR Sbjct: 1914 RGLTRDQFDAVRVRAR 1929 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,117,504 Number of Sequences: 219361 Number of extensions: 1445306 Number of successful extensions: 3440 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3371 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3438 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)