ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61i06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1770_SYNY3 (P73627) Hypothetical protein sll1770 82 2e-15
2Y095_SYNY3 (Q55884) Hypothetical protein sll0095 55 3e-07
3UBIB_XANCP (Q8PDW1) Probable ubiquinone biosynthesis protein ubiB 32 1.4
4TF2AA_PONPY (Q5RCU0) Transcription initiation factor IIA subunit... 32 1.8
5TF2AA_HUMAN (P52655) Transcription initiation factor IIA subunit... 32 1.8
6TF2AA_RAT (O08949) Transcription initiation factor IIA subunit 1... 32 1.8
7TF2AA_MOUSE (Q99PM3) Transcription initiation factor IIA subunit... 32 1.8
8UBIB_NEIMB (Q9K0N0) Probable ubiquinone biosynthesis protein ubiB 31 3.1
9UBIB_NEIMA (Q9JVQ5) Probable ubiquinone biosynthesis protein ubiB 31 3.1
10Y1919_SYNY3 (P73121) Hypothetical protein slr1919 30 5.2
11RS2_GLOVI (Q7NJK2) 30S ribosomal protein S2 30 6.9
12ATPD_BACST (P42008) ATP synthase delta chain (EC 3.6.3.14) 30 6.9
13UACA_MOUSE (Q8CGB3) Uveal autoantigen with coiled-coil domains a... 30 9.0
14G6PD_CERCA (P41571) Glucose-6-phosphate 1-dehydrogenase (EC 1.1.... 30 9.0

>Y1770_SYNY3 (P73627) Hypothetical protein sll1770|
          Length = 585

 Score = 82.0 bits (201), Expect = 2e-15
 Identities = 41/105 (39%), Positives = 67/105 (63%)
 Frame = -2

Query: 682 RAFSTLEGIGYILDPDFSFVKVAAPYAQELLDLKTRRRAGPELVQEIRKQANDARDSTIS 503
           RAFSTLEG+G  LDPDF+F+ VA P+A ++++          ++ E+ +QA    +S + 
Sbjct: 433 RAFSTLEGVGKGLDPDFNFMAVAQPFALQIMNNSNGFNPAGNIMDELGRQAVQVGNSALG 492

Query: 502 MPYRIQRIEDFVGQLESGDLKLRVRVLESERAARKANVLQMATMY 368
           +P   +RIED + +L+ GD+++RVR  E++R  R+   +QM T Y
Sbjct: 493 LP---RRIEDSLDRLDRGDIRVRVRSTETDRLLRRMGTMQMGTNY 534



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>Y095_SYNY3 (Q55884) Hypothetical protein sll0095|
          Length = 567

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 32/123 (26%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
 Frame = -2

Query: 682 RAFSTLEGIGYILDPDFSFVKVAAPYAQELLDLKTRRRAGPELVQEIRKQANDARDSTIS 503
           ++ STL+GI   LDP ++ +  + P+ Q +   + +R     L+Q++++ A D     ++
Sbjct: 409 KSISTLDGIARALDPRYNLIAASQPFIQSITVAQPKRSLAMALLQQVKQFALD----QLN 464

Query: 502 MPYRIQR-IEDFVGQLESGDLKLRVRVLESERAARKANVLQMATMYTAMGG-TLLNIGVV 329
            P R Q+ +++   +LE G+L+   R  E +R  RK ++   + ++  + G TLL+  V+
Sbjct: 465 RPSRNQQFLQELAAKLERGELQFATRSPEGDRLLRKIHLALKSLIFACLTGFTLLSATVL 524

Query: 328 MAS 320
           +++
Sbjct: 525 LST 527



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>UBIB_XANCP (Q8PDW1) Probable ubiquinone biosynthesis protein ubiB|
          Length = 557

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
 Frame = -2

Query: 667 LEGIGYILDPDFSFVKVAAPYAQELLDLKTRRRAGP-ELVQEIRKQANDARDSTISMPYR 491
           +EG+G  LDP      VA P  + +L    R R  P  ++ E+RK+  +       MP  
Sbjct: 415 IEGVGRQLDPKLDIWAVARPVLERIL----RERYSPRRVLGELRKRLPEIMTHAPDMP-- 468

Query: 490 IQRIEDFVGQLESGDLKLRVRVLESERAARKANVLQMATMYTAMGGTLLNIGVVM 326
            + +  ++ Q   G  +L +R  E          LQ   +    G  LL +  V+
Sbjct: 469 -RLVHSWLKQQVEGRHQLDIRSSELRALDLSLRKLQTRVVTAITGSGLLVVAAVL 522



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>TF2AA_PONPY (Q5RCU0) Transcription initiation factor IIA subunit 1 (General|
           transcription factor IIA1) [Contains: Transcription
           initiation factor IIA alpha chain (TFIIA p35 subunit);
           Transcription initiation factor IIA beta chain (TFIIA
           p19 subunit)]
          Length = 376

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -1

Query: 248 DAKSEETREIRDDDVIAVLHYGNVHKNQDKWFTSVK----KLNGNCFLIHR 108
           D   EE +E+ D + + V  Y  +H++++KW   +K     LNG  ++  +
Sbjct: 319 DVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSK 369



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>TF2AA_HUMAN (P52655) Transcription initiation factor IIA subunit 1 (General|
           transcription factor IIA1) (TFIIA-42) (TFIIAL)
           [Contains: Transcription initiation factor IIA alpha
           chain (TFIIA p35 subunit); Transcription initiation
           factor IIA beta chain (TFI
          Length = 376

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -1

Query: 248 DAKSEETREIRDDDVIAVLHYGNVHKNQDKWFTSVK----KLNGNCFLIHR 108
           D   EE +E+ D + + V  Y  +H++++KW   +K     LNG  ++  +
Sbjct: 319 DVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSK 369



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>TF2AA_RAT (O08949) Transcription initiation factor IIA subunit 1 (General|
           transcription factor IIA1) [Contains: Transcription
           initiation factor IIA alpha chain (TFIIA p35 subunit);
           Transcription initiation factor IIA beta chain (TFIIA
           p19 subunit)]
          Length = 377

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -1

Query: 248 DAKSEETREIRDDDVIAVLHYGNVHKNQDKWFTSVK----KLNGNCFLIHR 108
           D   EE +E+ D + + V  Y  +H++++KW   +K     LNG  ++  +
Sbjct: 320 DVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSK 370



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>TF2AA_MOUSE (Q99PM3) Transcription initiation factor IIA subunit 1 (General|
           transcription factor IIA1) [Contains: Transcription
           initiation factor IIA alpha chain (TFIIA p35 subunit);
           Transcription initiation factor IIA beta chain (TFIIA
           p19 subunit)]
          Length = 378

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -1

Query: 248 DAKSEETREIRDDDVIAVLHYGNVHKNQDKWFTSVK----KLNGNCFLIHR 108
           D   EE +E+ D + + V  Y  +H++++KW   +K     LNG  ++  +
Sbjct: 321 DVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSK 371



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>UBIB_NEIMB (Q9K0N0) Probable ubiquinone biosynthesis protein ubiB|
          Length = 503

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -2

Query: 667 LEGIGYILDPDFSFVKVAAPYAQELLDLKTRRRAGPE-LVQEIRKQANDARDSTISMPYR 491
           +EG+G  LDPD    K A P+  + ++     + GP+ L + ++ +A D      S+P +
Sbjct: 403 IEGLGRQLDPDLDLWKTAKPFLVKWMN----GQVGPKALWRNLKNEAPDWAQIIPSLPRK 458

Query: 490 IQRIEDFVGQLESGD 446
           I  + D   Q E  D
Sbjct: 459 ISALIDENRQQEMRD 473



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>UBIB_NEIMA (Q9JVQ5) Probable ubiquinone biosynthesis protein ubiB|
          Length = 503

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -2

Query: 667 LEGIGYILDPDFSFVKVAAPYAQELLDLKTRRRAGPE-LVQEIRKQANDARDSTISMPYR 491
           +EG+G  LDPD    K A P+  + ++     + GP+ L + ++ +A D      S+P +
Sbjct: 403 IEGLGRQLDPDLDLWKTAKPFLVKWMN----GQVGPKALWRNLKNEAPDWAQIIPSLPRK 458

Query: 490 IQRIEDFVGQLESGD 446
           I  + D   Q E  D
Sbjct: 459 ISALIDENRQQEMRD 473



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>Y1919_SYNY3 (P73121) Hypothetical protein slr1919|
          Length = 566

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 682 RAFSTLEGIGYILDPDFSFVKVAAPYAQELL 590
           R+  T EG+   LDP+F  V+VA PY    L
Sbjct: 417 RSLVTQEGLALSLDPNFKIVEVAYPYVARRL 447



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>RS2_GLOVI (Q7NJK2) 30S ribosomal protein S2|
          Length = 274

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 11/39 (28%), Positives = 27/39 (69%)
 Frame = -2

Query: 652 YILDPDFSFVKVAAPYAQELLDLKTRRRAGPELVQEIRK 536
           ++LD  +S+++ A+   +++L + T+R+A P + QE ++
Sbjct: 48  HLLDEAYSYLREASDQGKKILFVGTKRQAAPVIAQEAKR 86



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>ATPD_BACST (P42008) ATP synthase delta chain (EC 3.6.3.14)|
          Length = 178

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -2

Query: 628 FVKVAAPYAQELLDLKTRRRAG--PELVQEIRKQANDARDSTISMPYRIQRIED 473
           F  V+AP    LL L  R R G  PEL  +    ANDAR    ++ Y  + + D
Sbjct: 66  FAGVSAPVKNTLLLLLERHRFGLVPELADQFIALANDARGIAEAIAYSARPLTD 119



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>UACA_MOUSE (Q8CGB3) Uveal autoantigen with coiled-coil domains and ankyrin|
            repeats protein (Nucling) (Nuclear membrane-binding
            protein)
          Length = 1411

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 25/83 (30%), Positives = 38/83 (45%)
 Frame = -2

Query: 622  KVAAPYAQELLDLKTRRRAGPELVQEIRKQANDARDSTISMPYRIQRIEDFVGQLESGDL 443
            KV+A   +ELL L         + QEIR Q      S  ++    QRI++   Q+E+ D 
Sbjct: 1263 KVSAKDEKELLHLS--------IEQEIRDQKERCDKSLTTIMELQQRIQESAKQIEAKDN 1314

Query: 442  KLRVRVLESERAARKANVLQMAT 374
            K+   + + ER  +  N L   T
Sbjct: 1315 KITELLNDVERLKQALNGLSQLT 1337



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>G6PD_CERCA (P41571) Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) (G6PD)|
           (Zwischenferment)
          Length = 526

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 22/76 (28%), Positives = 34/76 (44%)
 Frame = -2

Query: 655 GYILDPDFSFVKVAAPYAQELLDLKTRRRAGPELVQEIRKQANDARDSTISMPYRIQRIE 476
           GY+ DP  S       YAQ +L +   R  G   +    K A D R + + + YR    +
Sbjct: 334 GYLDDPTVSNDSNTPTYAQGVLRINNERWDGVPFILRCGK-ALDERKAVVRIQYRDVPGD 392

Query: 475 DFVGQLESGDLKLRVR 428
            F G  +  +L +RV+
Sbjct: 393 IFEGNSKRNELVIRVQ 408


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,386,790
Number of Sequences: 219361
Number of extensions: 2005372
Number of successful extensions: 5848
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5846
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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