ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61i06 |
|---|---|
| Clone Library Name | barley_pub |
>Y1770_SYNY3 (P73627) Hypothetical protein sll1770| Length = 585 Score = 82.0 bits (201), Expect = 2e-15 Identities = 41/105 (39%), Positives = 67/105 (63%) Frame = -2 Query: 682 RAFSTLEGIGYILDPDFSFVKVAAPYAQELLDLKTRRRAGPELVQEIRKQANDARDSTIS 503 RAFSTLEG+G LDPDF+F+ VA P+A ++++ ++ E+ +QA +S + Sbjct: 433 RAFSTLEGVGKGLDPDFNFMAVAQPFALQIMNNSNGFNPAGNIMDELGRQAVQVGNSALG 492 Query: 502 MPYRIQRIEDFVGQLESGDLKLRVRVLESERAARKANVLQMATMY 368 +P +RIED + +L+ GD+++RVR E++R R+ +QM T Y Sbjct: 493 LP---RRIEDSLDRLDRGDIRVRVRSTETDRLLRRMGTMQMGTNY 534
>Y095_SYNY3 (Q55884) Hypothetical protein sll0095| Length = 567 Score = 54.7 bits (130), Expect = 3e-07 Identities = 32/123 (26%), Positives = 69/123 (56%), Gaps = 2/123 (1%) Frame = -2 Query: 682 RAFSTLEGIGYILDPDFSFVKVAAPYAQELLDLKTRRRAGPELVQEIRKQANDARDSTIS 503 ++ STL+GI LDP ++ + + P+ Q + + +R L+Q++++ A D ++ Sbjct: 409 KSISTLDGIARALDPRYNLIAASQPFIQSITVAQPKRSLAMALLQQVKQFALD----QLN 464 Query: 502 MPYRIQR-IEDFVGQLESGDLKLRVRVLESERAARKANVLQMATMYTAMGG-TLLNIGVV 329 P R Q+ +++ +LE G+L+ R E +R RK ++ + ++ + G TLL+ V+ Sbjct: 465 RPSRNQQFLQELAAKLERGELQFATRSPEGDRLLRKIHLALKSLIFACLTGFTLLSATVL 524 Query: 328 MAS 320 +++ Sbjct: 525 LST 527
>UBIB_XANCP (Q8PDW1) Probable ubiquinone biosynthesis protein ubiB| Length = 557 Score = 32.3 bits (72), Expect = 1.4 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 1/115 (0%) Frame = -2 Query: 667 LEGIGYILDPDFSFVKVAAPYAQELLDLKTRRRAGP-ELVQEIRKQANDARDSTISMPYR 491 +EG+G LDP VA P + +L R R P ++ E+RK+ + MP Sbjct: 415 IEGVGRQLDPKLDIWAVARPVLERIL----RERYSPRRVLGELRKRLPEIMTHAPDMP-- 468 Query: 490 IQRIEDFVGQLESGDLKLRVRVLESERAARKANVLQMATMYTAMGGTLLNIGVVM 326 + + ++ Q G +L +R E LQ + G LL + V+ Sbjct: 469 -RLVHSWLKQQVEGRHQLDIRSSELRALDLSLRKLQTRVVTAITGSGLLVVAAVL 522
>TF2AA_PONPY (Q5RCU0) Transcription initiation factor IIA subunit 1 (General| transcription factor IIA1) [Contains: Transcription initiation factor IIA alpha chain (TFIIA p35 subunit); Transcription initiation factor IIA beta chain (TFIIA p19 subunit)] Length = 376 Score = 32.0 bits (71), Expect = 1.8 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Frame = -1 Query: 248 DAKSEETREIRDDDVIAVLHYGNVHKNQDKWFTSVK----KLNGNCFLIHR 108 D EE +E+ D + + V Y +H++++KW +K LNG ++ + Sbjct: 319 DVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSK 369
>TF2AA_HUMAN (P52655) Transcription initiation factor IIA subunit 1 (General| transcription factor IIA1) (TFIIA-42) (TFIIAL) [Contains: Transcription initiation factor IIA alpha chain (TFIIA p35 subunit); Transcription initiation factor IIA beta chain (TFI Length = 376 Score = 32.0 bits (71), Expect = 1.8 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Frame = -1 Query: 248 DAKSEETREIRDDDVIAVLHYGNVHKNQDKWFTSVK----KLNGNCFLIHR 108 D EE +E+ D + + V Y +H++++KW +K LNG ++ + Sbjct: 319 DVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSK 369
>TF2AA_RAT (O08949) Transcription initiation factor IIA subunit 1 (General| transcription factor IIA1) [Contains: Transcription initiation factor IIA alpha chain (TFIIA p35 subunit); Transcription initiation factor IIA beta chain (TFIIA p19 subunit)] Length = 377 Score = 32.0 bits (71), Expect = 1.8 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Frame = -1 Query: 248 DAKSEETREIRDDDVIAVLHYGNVHKNQDKWFTSVK----KLNGNCFLIHR 108 D EE +E+ D + + V Y +H++++KW +K LNG ++ + Sbjct: 320 DVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSK 370
>TF2AA_MOUSE (Q99PM3) Transcription initiation factor IIA subunit 1 (General| transcription factor IIA1) [Contains: Transcription initiation factor IIA alpha chain (TFIIA p35 subunit); Transcription initiation factor IIA beta chain (TFIIA p19 subunit)] Length = 378 Score = 32.0 bits (71), Expect = 1.8 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Frame = -1 Query: 248 DAKSEETREIRDDDVIAVLHYGNVHKNQDKWFTSVK----KLNGNCFLIHR 108 D EE +E+ D + + V Y +H++++KW +K LNG ++ + Sbjct: 321 DVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSK 371
>UBIB_NEIMB (Q9K0N0) Probable ubiquinone biosynthesis protein ubiB| Length = 503 Score = 31.2 bits (69), Expect = 3.1 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Frame = -2 Query: 667 LEGIGYILDPDFSFVKVAAPYAQELLDLKTRRRAGPE-LVQEIRKQANDARDSTISMPYR 491 +EG+G LDPD K A P+ + ++ + GP+ L + ++ +A D S+P + Sbjct: 403 IEGLGRQLDPDLDLWKTAKPFLVKWMN----GQVGPKALWRNLKNEAPDWAQIIPSLPRK 458 Query: 490 IQRIEDFVGQLESGD 446 I + D Q E D Sbjct: 459 ISALIDENRQQEMRD 473
>UBIB_NEIMA (Q9JVQ5) Probable ubiquinone biosynthesis protein ubiB| Length = 503 Score = 31.2 bits (69), Expect = 3.1 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Frame = -2 Query: 667 LEGIGYILDPDFSFVKVAAPYAQELLDLKTRRRAGPE-LVQEIRKQANDARDSTISMPYR 491 +EG+G LDPD K A P+ + ++ + GP+ L + ++ +A D S+P + Sbjct: 403 IEGLGRQLDPDLDLWKTAKPFLVKWMN----GQVGPKALWRNLKNEAPDWAQIIPSLPRK 458 Query: 490 IQRIEDFVGQLESGD 446 I + D Q E D Sbjct: 459 ISALIDENRQQEMRD 473
>Y1919_SYNY3 (P73121) Hypothetical protein slr1919| Length = 566 Score = 30.4 bits (67), Expect = 5.2 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -2 Query: 682 RAFSTLEGIGYILDPDFSFVKVAAPYAQELL 590 R+ T EG+ LDP+F V+VA PY L Sbjct: 417 RSLVTQEGLALSLDPNFKIVEVAYPYVARRL 447
>RS2_GLOVI (Q7NJK2) 30S ribosomal protein S2| Length = 274 Score = 30.0 bits (66), Expect = 6.9 Identities = 11/39 (28%), Positives = 27/39 (69%) Frame = -2 Query: 652 YILDPDFSFVKVAAPYAQELLDLKTRRRAGPELVQEIRK 536 ++LD +S+++ A+ +++L + T+R+A P + QE ++ Sbjct: 48 HLLDEAYSYLREASDQGKKILFVGTKRQAAPVIAQEAKR 86
>ATPD_BACST (P42008) ATP synthase delta chain (EC 3.6.3.14)| Length = 178 Score = 30.0 bits (66), Expect = 6.9 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = -2 Query: 628 FVKVAAPYAQELLDLKTRRRAG--PELVQEIRKQANDARDSTISMPYRIQRIED 473 F V+AP LL L R R G PEL + ANDAR ++ Y + + D Sbjct: 66 FAGVSAPVKNTLLLLLERHRFGLVPELADQFIALANDARGIAEAIAYSARPLTD 119
>UACA_MOUSE (Q8CGB3) Uveal autoantigen with coiled-coil domains and ankyrin| repeats protein (Nucling) (Nuclear membrane-binding protein) Length = 1411 Score = 29.6 bits (65), Expect = 9.0 Identities = 25/83 (30%), Positives = 38/83 (45%) Frame = -2 Query: 622 KVAAPYAQELLDLKTRRRAGPELVQEIRKQANDARDSTISMPYRIQRIEDFVGQLESGDL 443 KV+A +ELL L + QEIR Q S ++ QRI++ Q+E+ D Sbjct: 1263 KVSAKDEKELLHLS--------IEQEIRDQKERCDKSLTTIMELQQRIQESAKQIEAKDN 1314 Query: 442 KLRVRVLESERAARKANVLQMAT 374 K+ + + ER + N L T Sbjct: 1315 KITELLNDVERLKQALNGLSQLT 1337
>G6PD_CERCA (P41571) Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) (G6PD)| (Zwischenferment) Length = 526 Score = 29.6 bits (65), Expect = 9.0 Identities = 22/76 (28%), Positives = 34/76 (44%) Frame = -2 Query: 655 GYILDPDFSFVKVAAPYAQELLDLKTRRRAGPELVQEIRKQANDARDSTISMPYRIQRIE 476 GY+ DP S YAQ +L + R G + K A D R + + + YR + Sbjct: 334 GYLDDPTVSNDSNTPTYAQGVLRINNERWDGVPFILRCGK-ALDERKAVVRIQYRDVPGD 392 Query: 475 DFVGQLESGDLKLRVR 428 F G + +L +RV+ Sbjct: 393 IFEGNSKRNELVIRVQ 408 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,386,790 Number of Sequences: 219361 Number of extensions: 2005372 Number of successful extensions: 5848 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 5424 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5846 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6769072002 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
