ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61i06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450284.1| Oryza sativa (japonica cultivar-group), mRNA 391 e-105
2dbj|AK120335.1| Oryza sativa (japonica cultivar-group) cDNA clon... 383 e-103
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
4dbj|AP005905.3| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
5gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.60
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.60
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.60
8ref|NM_180205.1| Arabidopsis thaliana unknown protein AT3G07700 ... 42 2.4
9ref|NM_111649.2| Arabidopsis thaliana unknown protein AT3G07700 ... 42 2.4
10gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.4
11gb|AY080823.1| Arabidopsis thaliana unknown protein (At3g07700) ... 42 2.4
12emb|CR385046.9| Zebrafish DNA sequence from clone CH211-217P23 i... 42 2.4
13gb|AC022536.13| Homo sapiens chromosome 10 clone RP11-38M7, comp... 42 2.4
14emb|BX663519.12| Zebrafish DNA sequence from clone DKEY-182M1 in... 42 2.4
15gb|AY056806.1| Arabidopsis thaliana At3g07700/F17A17.4 mRNA, com... 42 2.4
16gb|AF119906.1|AF119906 Homo sapiens PRO2859 mRNA, complete cds 42 2.4
17emb|BX825965.1|CNS0A6HO Arabidopsis thaliana Full-length cDNA Co... 42 2.4
18emb|BX825129.1|CNS0A66K Arabidopsis thaliana Full-length cDNA Co... 42 2.4
19gb|AY088788.1| Arabidopsis thaliana clone 95043 mRNA, complete s... 42 2.4
20dbj|AK120763.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.4
21gb|AC174769.1| Gasterosteus aculeatus clone VMRC28-49K14, comple... 42 2.4
22gb|AC132871.7| Mus musculus chromosome 1, clone RP24-387A12, com... 40 9.3
23emb|AL357140.33| Human DNA sequence from clone RP11-84A14 on chr... 40 9.3
24emb|AL137060.13| Human DNA sequence from clone RP11-34F20 on chr... 40 9.3
25emb|AL110115.38|HSJ324O17 Human DNA sequence from clone RP3-324O... 40 9.3
26gb|AC118584.18| Papio anubis clone rp41-78d16, complete sequence 40 9.3
27gb|AF440619.1|AF440619 Homo sapiens 13q14 chronic lymphocytic le... 40 9.3
28gb|AF279660.2|AF279660 Homo sapiens CAR (RFP2) gene, complete cd... 40 9.3
29emb|CR386340.1| Gallus gallus finished cDNA, clone ChEST731g19 40 9.3
30gb|AC069475.27| Homo sapiens chromosome 13 clone 317g11 map 13q1... 40 9.3
31gb|AC148674.1| Macaca mulatta Major Histocompatibility Complex B... 40 9.3
32gb|AF334404.1|AF334404 Homo sapiens chromosome 13q14 BAC clone C... 40 9.3
33gb|AC011246.6| Homo sapiens BAC clone RP11-498O20 from 2, comple... 40 9.3
34dbj|AK174212.1| Ciona intestinalis cDNA, clone:cibd071i22, full ... 40 9.3
35emb|BX470160.9| Zebrafish DNA sequence from clone DKEY-25F3 in l... 40 9.3
36emb|BX000480.6| Zebrafish DNA sequence from clone DKEY-14C5 in l... 40 9.3 
>ref|XM_450284.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2579

 Score =  391 bits (197), Expect = e-105
 Identities = 404/473 (85%)
 Strand = Plus / Minus

                                                                        
Query: 207  atcatcgtctcgaatttctcgagtttcttcactcttcgcatcgatgcaaccagtaatgcc 266
            ||||| ||||||||||| |||||||||||||||||  |||| |||   |  || ||||||
Sbjct: 2185 atcattgtctcgaatttgtcgagtttcttcactctctgcatagatcttatgagcaatgcc 2126

                                                                        
Query: 267  aataaaatgcctgcgccgacgaaagacccatttgcgactatttggtttccttgactagcc 326
            || || ||||||||||| || |||||||| ||||| ||||||||||| ||||| |||  |
Sbjct: 2125 aagaatatgcctgcgccaacaaaagacccgtttgccactatttggttcccttggctactc 2066

                                                                        
Query: 327  atgacgaccccaatattcaagagagtaccacccatggctgtatacatggtcgccatctga 386
            |    ||||||||  ||||| || || ||||| ||||||||||||||||||||||| |||
Sbjct: 2065 aatgtgaccccaacgttcaacagcgtgccaccaatggctgtatacatggtcgccatttga 2006

                                                                        
Query: 387  agtacgttagctttacgagcagctcgttccgactcaagtactctgactctgagtttcagg 446
            ||||| || || ||||||||||||| ||| |||||||||||||||||||| |||||||| 
Sbjct: 2005 agtacattcgccttacgagcagctctttcagactcaagtactctgactctaagtttcaga 1946

                                                                        
Query: 447  tcacccgactcgagttgccccacaaaatcctcgatccgttggattctgtagggcattgag 506
            ||||| ||||| |||||||| ||||||||||| || || || ||||||||||||||||||
Sbjct: 1945 tcaccggactcaagttgcccaacaaaatcctcaattcgctgtattctgtagggcattgag 1886

                                                                        
Query: 507  atcgtagaatcacgggcatcatttgcttgctttcttatctcctggactagttcaggtcca 566
            || ||||| ||||| |||   ||||||||||||||||||||| |||||||||||||| ||
Sbjct: 1885 atggtagagtcacgagcactgtttgcttgctttcttatctcccggactagttcaggtgca 1826

                                                                        
Query: 567  gctcttcgtctcgttttcaagtctagcagttcctgtgcatatggtgcagcaactttgaca 626
              | ||||||||  |||||||||||| |||||||||||||| ||||| |||||||| |||
Sbjct: 1825 cttgttcgtctctgtttcaagtctagaagttcctgtgcataaggtgcggcaactttcaca 1766

                                                                 
Query: 627  aaggaaaaatcaggatccagtatgtacccgatgccttcaagagttgagaatgc 679
            ||||||||||| ||||||| ||| || || || ||||||||||||||||||||
Sbjct: 1765 aaggaaaaatctggatccaatatatatccaatcccttcaagagttgagaatgc 1713
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>dbj|AK120335.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059I22, full
            insert sequence
          Length = 2579

 Score =  383 bits (193), Expect = e-103
 Identities = 403/473 (85%)
 Strand = Plus / Minus

                                                                        
Query: 207  atcatcgtctcgaatttctcgagtttcttcactcttcgcatcgatgcaaccagtaatgcc 266
            ||||| ||||||||||| |||||||||||||||||  |||| |||   |  || ||||||
Sbjct: 2185 atcattgtctcgaatttgtcgagtttcttcactctctgcatagatcttatgagcaatgcc 2126

                                                                        
Query: 267  aataaaatgcctgcgccgacgaaagacccatttgcgactatttggtttccttgactagcc 326
            || || ||||||||||| || |||||||| ||||| ||||||||||| ||||| |||  |
Sbjct: 2125 aagaatatgcctgcgccaacaaaagacccgtttgccactatttggttcccttggctactc 2066

                                                                        
Query: 327  atgacgaccccaatattcaagagagtaccacccatggctgtatacatggtcgccatctga 386
            |    ||||||||  ||||| || || ||||| ||||||||||||||||||||||| |||
Sbjct: 2065 aatgtgaccccaacgttcaacagcgtgccaccaatggctgtatacatggtcgccatttga 2006

                                                                        
Query: 387  agtacgttagctttacgagcagctcgttccgactcaagtactctgactctgagtttcagg 446
            ||||| || || |||| |||||||| ||| |||||||||||||||||||| |||||||| 
Sbjct: 2005 agtacattcgccttactagcagctctttcagactcaagtactctgactctaagtttcaga 1946

                                                                        
Query: 447  tcacccgactcgagttgccccacaaaatcctcgatccgttggattctgtagggcattgag 506
            ||||| ||||| |||||||| ||||||||||| || || || ||||||||||||||||||
Sbjct: 1945 tcaccggactcaagttgcccaacaaaatcctcaattcgctgtattctgtagggcattgag 1886

                                                                        
Query: 507  atcgtagaatcacgggcatcatttgcttgctttcttatctcctggactagttcaggtcca 566
            || ||||| ||||| |||   ||||||||||||||||||||| |||||||||||||| ||
Sbjct: 1885 atggtagagtcacgagcactgtttgcttgctttcttatctcccggactagttcaggtgca 1826

                                                                        
Query: 567  gctcttcgtctcgttttcaagtctagcagttcctgtgcatatggtgcagcaactttgaca 626
              | ||||||||  |||||||||||| |||||||||||||| ||||| |||||||| |||
Sbjct: 1825 cttgttcgtctctgtttcaagtctagaagttcctgtgcataaggtgcggcaactttcaca 1766

                                                                 
Query: 627  aaggaaaaatcaggatccagtatgtacccgatgccttcaagagttgagaatgc 679
            ||||||||||| ||||||| ||| || || || ||||||||||||||||||||
Sbjct: 1765 aaggaaaaatctggatccaatatatatccaatcccttcaagagttgagaatgc 1713
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  115 bits (58), Expect = 2e-22
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                           
Query: 419     ctcaagtactctgactctgagtttcaggtcacccgactcgagttgccccacaaaatcctc 478
               |||||||||||||||||| |||||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 3807556 ctcaagtactctgactctaagtttcagatcaccggactcaagttgcccaacaaaatcctc 3807497

                                                         
Query: 479     gatccgttggattctgtagggcattgagatcgtagaatcacg 520
                || || || |||||||||||||||||||| ||||| |||||
Sbjct: 3807496 aattcgctgtattctgtagggcattgagatggtagagtcacg 3807455



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 121/145 (83%)
 Strand = Plus / Minus

                                                                           
Query: 276     cctgcgccgacgaaagacccatttgcgactatttggtttccttgactagccatgacgacc 335
               |||||||| || |||||||| ||||| ||||||||||| ||||| |||  ||    ||||
Sbjct: 3808066 cctgcgccaacaaaagacccgtttgccactatttggttcccttggctactcaatgtgacc 3808007

                                                                           
Query: 336     ccaatattcaagagagtaccacccatggctgtatacatggtcgccatctgaagtacgtta 395
               ||||  ||||| || || ||||| ||||||||||||||||||||||| |||||||| || 
Sbjct: 3808006 ccaacgttcaacagcgtgccaccaatggctgtatacatggtcgccatttgaagtacattc 3807947

                                        
Query: 396     gctttacgagcagctcgttccgact 420
               || ||||||||||||| ||| ||||
Sbjct: 3807946 gccttacgagcagctctttcagact 3807922



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 66/74 (89%)
 Strand = Plus / Minus

                                                                           
Query: 528     tttgcttgctttcttatctcctggactagttcaggtccagctcttcgtctcgttttcaag 587
               ||||||||||||||||||||| |||||||||||||| ||  | ||||||||  |||||||
Sbjct: 3807329 tttgcttgctttcttatctcccggactagttcaggtgcacttgttcgtctctgtttcaag 3807270

                             
Query: 588     tctagcagttcctg 601
               ||||| ||||||||
Sbjct: 3807269 tctagaagttcctg 3807256



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                               
Query: 598     cctgtgcatatggtgcagcaactttgacaaaggaaaaatcaggatcca 645
               |||||||||| ||||| |||||||| |||||||||||||| |||||||
Sbjct: 3807008 cctgtgcataaggtgcggcaactttcacaaaggaaaaatctggatcca 3806961



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                  
Query: 207     atcatcgtctcgaatttctcgagtttcttcactct 241
               ||||| ||||||||||| |||||||||||||||||
Sbjct: 3808381 atcattgtctcgaatttgtcgagtttcttcactct 3808347



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 660     ccttcaagagttgagaatgc 679
               ||||||||||||||||||||
Sbjct: 3806616 ccttcaagagttgagaatgc 3806597
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>dbj|AP005905.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1080A02
          Length = 151360

 Score =  115 bits (58), Expect = 2e-22
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                         
Query: 419   ctcaagtactctgactctgagtttcaggtcacccgactcgagttgccccacaaaatcctc 478
             |||||||||||||||||| |||||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 47072 ctcaagtactctgactctaagtttcagatcaccggactcaagttgcccaacaaaatcctc 47013

                                                       
Query: 479   gatccgttggattctgtagggcattgagatcgtagaatcacg 520
              || || || |||||||||||||||||||| ||||| |||||
Sbjct: 47012 aattcgctgtattctgtagggcattgagatggtagagtcacg 46971



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 121/145 (83%)
 Strand = Plus / Minus

                                                                         
Query: 276   cctgcgccgacgaaagacccatttgcgactatttggtttccttgactagccatgacgacc 335
             |||||||| || |||||||| ||||| ||||||||||| ||||| |||  ||    ||||
Sbjct: 47582 cctgcgccaacaaaagacccgtttgccactatttggttcccttggctactcaatgtgacc 47523

                                                                         
Query: 336   ccaatattcaagagagtaccacccatggctgtatacatggtcgccatctgaagtacgtta 395
             ||||  ||||| || || ||||| ||||||||||||||||||||||| |||||||| || 
Sbjct: 47522 ccaacgttcaacagcgtgccaccaatggctgtatacatggtcgccatttgaagtacattc 47463

                                      
Query: 396   gctttacgagcagctcgttccgact 420
             || ||||||||||||| ||| ||||
Sbjct: 47462 gccttacgagcagctctttcagact 47438



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 66/74 (89%)
 Strand = Plus / Minus

                                                                         
Query: 528   tttgcttgctttcttatctcctggactagttcaggtccagctcttcgtctcgttttcaag 587
             ||||||||||||||||||||| |||||||||||||| ||  | ||||||||  |||||||
Sbjct: 46845 tttgcttgctttcttatctcccggactagttcaggtgcacttgttcgtctctgtttcaag 46786

                           
Query: 588   tctagcagttcctg 601
             ||||| ||||||||
Sbjct: 46785 tctagaagttcctg 46772



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                             
Query: 598   cctgtgcatatggtgcagcaactttgacaaaggaaaaatcaggatcca 645
             |||||||||| ||||| |||||||| |||||||||||||| |||||||
Sbjct: 46524 cctgtgcataaggtgcggcaactttcacaaaggaaaaatctggatcca 46477



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 207   atcatcgtctcgaatttctcgagtttcttcactct 241
             ||||| ||||||||||| |||||||||||||||||
Sbjct: 47897 atcattgtctcgaatttgtcgagtttcttcactct 47863



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 660   ccttcaagagttgagaatgc 679
             ||||||||||||||||||||
Sbjct: 46132 ccttcaagagttgagaatgc 46113
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>gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0074L11, complete sequence
          Length = 180703

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 51    aagttacaacattttcaggaag 72
             ||||||||||||||||||||||
Sbjct: 22087 aagttacaacattttcaggaag 22108
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 51       aagttacaacattttcaggaag 72
                ||||||||||||||||||||||
Sbjct: 21670034 aagttacaacattttcaggaag 21670055



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 526      catttgcttgctttcttatct 546
                |||||||||||||||||||||
Sbjct: 11244968 catttgcttgctttcttatct 11244988
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 51       aagttacaacattttcaggaag 72
                ||||||||||||||||||||||
Sbjct: 21980233 aagttacaacattttcaggaag 21980254



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 526      catttgcttgctttcttatct 546
                |||||||||||||||||||||
Sbjct: 11324157 catttgcttgctttcttatct 11324177
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>ref|NM_180205.1| Arabidopsis thaliana unknown protein AT3G07700 transcript variant
            AT3G07700.2 mRNA, complete cds
          Length = 2389

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 364  ctgtatacatggtcgccatctgaagtacgttagctttacgagcagctcgttccgactcaa 423
            |||||||||| ||||||||||| ||||   | ||||| || || |||| |||||||||||
Sbjct: 2023 ctgtatacatcgtcgccatctgcagtattgtcgctttccgggctgctctttccgactcaa 1964

             
Query: 424  g 424
            |
Sbjct: 1963 g 1963



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 71/88 (80%)
 Strand = Plus / Minus

                                                                        
Query: 594  agttcctgtgcatatggtgcagcaactttgacaaaggaaaaatcaggatccagtatgtac 653
            |||||||| ||||| || || ||||| || ||||||||||| || ||||| || ||||| 
Sbjct: 1793 agttcctgcgcataaggagccgcaaccttcacaaaggaaaattctggatcaaggatgtaa 1734

                                        
Query: 654  ccgatgccttcaagagttgagaatgctc 681
            || || || ||||| || || |||||||
Sbjct: 1733 ccaataccctcaagtgtggaaaatgctc 1706
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>ref|NM_111649.2| Arabidopsis thaliana unknown protein AT3G07700 transcript variant
            AT3G07700.1 mRNA, complete cds
          Length = 2478

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 364  ctgtatacatggtcgccatctgaagtacgttagctttacgagcagctcgttccgactcaa 423
            |||||||||| ||||||||||| ||||   | ||||| || || |||| |||||||||||
Sbjct: 2112 ctgtatacatcgtcgccatctgcagtattgtcgctttccgggctgctctttccgactcaa 2053

             
Query: 424  g 424
            |
Sbjct: 2052 g 2052



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 71/88 (80%)
 Strand = Plus / Minus

                                                                        
Query: 594  agttcctgtgcatatggtgcagcaactttgacaaaggaaaaatcaggatccagtatgtac 653
            |||||||| ||||| || || ||||| || ||||||||||| || ||||| || ||||| 
Sbjct: 1882 agttcctgcgcataaggagccgcaaccttcacaaaggaaaattctggatcaaggatgtaa 1823

                                        
Query: 654  ccgatgccttcaagagttgagaatgctc 681
            || || || ||||| || || |||||||
Sbjct: 1822 ccaataccctcaagtgtggaaaatgctc 1795
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>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0015P05 map C53961S, complete sequence
          Length = 175121

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 526   catttgcttgctttcttatct 546
             |||||||||||||||||||||
Sbjct: 31326 catttgcttgctttcttatct 31346
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>gb|AY080823.1| Arabidopsis thaliana unknown protein (At3g07700) mRNA, partial cds
          Length = 1897

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 364  ctgtatacatggtcgccatctgaagtacgttagctttacgagcagctcgttccgactcaa 423
            |||||||||| ||||||||||| ||||   | ||||| || || |||| |||||||||||
Sbjct: 1540 ctgtatacatcgtcgccatctgcagtattgtcgctttccgggctgctctttccgactcaa 1481

             
Query: 424  g 424
            |
Sbjct: 1480 g 1480



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 71/88 (80%)
 Strand = Plus / Minus

                                                                        
Query: 594  agttcctgtgcatatggtgcagcaactttgacaaaggaaaaatcaggatccagtatgtac 653
            |||||||| ||||| || || ||||| || ||||||||||| || ||||| || ||||| 
Sbjct: 1310 agttcctgcgcataaggagccgcaaccttcacaaaggaaaattctggatcaaggatgtaa 1251

                                        
Query: 654  ccgatgccttcaagagttgagaatgctc 681
            || || || ||||| || || |||||||
Sbjct: 1250 ccaataccctcaagtgtggaaaatgctc 1223
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>emb|CR385046.9| Zebrafish DNA sequence from clone CH211-217P23 in linkage group 8,
              complete sequence
          Length = 206751

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 168    gtttttatgcacatttccataatga 192
              ||||||||||||||||||| |||||
Sbjct: 145193 gtttttatgcacatttccaaaatga 145169
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>gb|AC022536.13| Homo sapiens chromosome 10 clone RP11-38M7, complete sequence
          Length = 160678

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 100   attatttacctatgaatgagaaagc 124
             ||||||||||| |||||||||||||
Sbjct: 65756 attatttacctctgaatgagaaagc 65732
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>emb|BX663519.12| Zebrafish DNA sequence from clone DKEY-182M1 in linkage group 15,
             complete sequence
          Length = 164720

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 169   tttttatgcacatttccataa 189
             |||||||||||||||||||||
Sbjct: 42341 tttttatgcacatttccataa 42361
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>gb|AY056806.1| Arabidopsis thaliana At3g07700/F17A17.4 mRNA, complete cds
          Length = 2388

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 364  ctgtatacatggtcgccatctgaagtacgttagctttacgagcagctcgttccgactcaa 423
            |||||||||| ||||||||||| ||||   | ||||| || || |||| |||||||||||
Sbjct: 2022 ctgtatacatcgtcgccatctgcagtattgtcgctttccgggctgctctttccgactcaa 1963

             
Query: 424  g 424
            |
Sbjct: 1962 g 1962



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 71/88 (80%)
 Strand = Plus / Minus

                                                                        
Query: 594  agttcctgtgcatatggtgcagcaactttgacaaaggaaaaatcaggatccagtatgtac 653
            |||||||| ||||| || || ||||| || ||||||||||| || ||||| || ||||| 
Sbjct: 1792 agttcctgcgcataaggagccgcaaccttcacaaaggaaaattctggatcaaggatgtaa 1733

                                        
Query: 654  ccgatgccttcaagagttgagaatgctc 681
            || || || ||||| || || |||||||
Sbjct: 1732 ccaataccctcaagtgtggaaaatgctc 1705
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>gb|AF119906.1|AF119906 Homo sapiens PRO2859 mRNA, complete cds
          Length = 1779

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 100 attatttacctatgaatgagaaagc 124
           ||||||||||| |||||||||||||
Sbjct: 286 attatttacctctgaatgagaaagc 310
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>emb|BX825965.1|CNS0A6HO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL76ZE08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 623

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 364 ctgtatacatggtcgccatctgaagtacgttagctttacgagcagctcgttccgactcaa 423
           |||||||||| ||||||||||| ||||   | ||||| || || |||| |||||||||||
Sbjct: 319 ctgtatacatcgtcgccatctgcagtattgtcgctttccgggctgctctttccgactcaa 260

            
Query: 424 g 424
           |
Sbjct: 259 g 259



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 71/88 (80%)
 Strand = Plus / Minus

                                                                       
Query: 594 agttcctgtgcatatggtgcagcaactttgacaaaggaaaaatcaggatccagtatgtac 653
           |||||||| ||||| || || ||||| || ||||||||||| || ||||| || ||||| 
Sbjct: 89  agttcctgcgcataaggagccgcaaccttcacaaaggaaaattctggatcaaggatgtaa 30

                                       
Query: 654 ccgatgccttcaagagttgagaatgctc 681
           || || || ||||| || || |||||||
Sbjct: 29  ccaataccctcaagtgtggaaaatgctc 2
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>emb|BX825129.1|CNS0A66K Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL13ZE11 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 684

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 364 ctgtatacatggtcgccatctgaagtacgttagctttacgagcagctcgttccgactcaa 423
           |||||||||| ||||||||||| ||||   | ||||| || || |||| |||||||||||
Sbjct: 341 ctgtatacatcgtcgccatctgcagtattgtcgctttccgggctgctctttccgactcaa 282

            
Query: 424 g 424
           |
Sbjct: 281 g 281



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 71/88 (80%)
 Strand = Plus / Minus

                                                                       
Query: 594 agttcctgtgcatatggtgcagcaactttgacaaaggaaaaatcaggatccagtatgtac 653
           |||||||| ||||| || || ||||| || ||||||||||| || ||||| || ||||| 
Sbjct: 111 agttcctgcgcataaggagccgcaaccttcacaaaggaaaattctggatcaaggatgtaa 52

                                       
Query: 654 ccgatgccttcaagagttgagaatgctc 681
           || || || ||||| || || |||||||
Sbjct: 51  ccaataccctcaagtgtggaaaatgctc 24
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>gb|AY088788.1| Arabidopsis thaliana clone 95043 mRNA, complete sequence
          Length = 2430

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 364  ctgtatacatggtcgccatctgaagtacgttagctttacgagcagctcgttccgactcaa 423
            |||||||||| ||||||||||| ||||   | ||||| || || |||| |||||||||||
Sbjct: 2112 ctgtatacatcgtcgccatctgcagtattgtcgctttccgggctgctctttccgactcaa 2053

             
Query: 424  g 424
            |
Sbjct: 2052 g 2052



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 71/88 (80%)
 Strand = Plus / Minus

                                                                        
Query: 594  agttcctgtgcatatggtgcagcaactttgacaaaggaaaaatcaggatccagtatgtac 653
            |||||||| ||||| || || ||||| || ||||||||||| || ||||| || ||||| 
Sbjct: 1882 agttcctgcgcataaggagccgcaaccttcacaaaggaaaattctggatcaaggatgtaa 1823

                                        
Query: 654  ccgatgccttcaagagttgagaatgctc 681
            || || || ||||| || || |||||||
Sbjct: 1822 ccaataccctcaagtgtggaaaatgctc 1795
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>dbj|AK120763.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007G17, full
            insert sequence
          Length = 4190

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 526  catttgcttgctttcttatct 546
            |||||||||||||||||||||
Sbjct: 2359 catttgcttgctttcttatct 2379
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>gb|AC174769.1| Gasterosteus aculeatus clone VMRC28-49K14, complete sequence
          Length = 135249

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 611   tgcagcaactttgacaaaggaaaaa 635
             ||||||| |||||||||||||||||
Sbjct: 11946 tgcagcagctttgacaaaggaaaaa 11970
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>gb|AC132871.7| Mus musculus chromosome 1, clone RP24-387A12, complete sequence
          Length = 188649

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    tctacatatattatttacct 110
             ||||||||||||||||||||
Sbjct: 92231 tctacatatattatttacct 92212
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>emb|AL357140.33| Human DNA sequence from clone RP11-84A14 on chromosome 1 Contains the
             5' end of the CLSTN1 gene for calsyntenin 1, the CTNNBIP1
             gene for catenin, beta interacting protein 1, two novel
             genes, the LZIC gene for leucine zipper and CTNNBIP1
             domain containing, the 5' end of the NMNAT1 gene for
             nicotinamide nucleotide adenylyltransferase 1 and a CpG
             island, complete sequence
          Length = 177470

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    atatattatttacctatgaa 115
             ||||||||||||||||||||
Sbjct: 21028 atatattatttacctatgaa 21047
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>emb|AL137060.13| Human DNA sequence from clone RP11-34F20 on chromosome 13 Contains the
             3' end of the RFP2 gene for ret finger protein 2, the
             DLEU2 gene for deleted in lymphocytic leukemia 2 (LEU2
             BCMSUN), the 5' end of the DLEU1 gene for deleted in
             lymphocytic leukemia 1 (BCMS LEU1), a ribosomal protein
             L18 (RPL18) pseudogene, a novel gene and four CpG islands,
             complete sequence
          Length = 154887

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     ctttctgctaaagaatgtat 20
             ||||||||||||||||||||
Sbjct: 64909 ctttctgctaaagaatgtat 64928
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>emb|AL110115.38|HSJ324O17 Human DNA sequence from clone RP3-324O17 on chromosome 20 Contains
            the 5' end of the ID1 gene for inhibitor of DNA binding
            1, dominant negative helix-loop-helix protein, two novel
            genes, the 3' end of the HM13 gene for histocompatibility
            (minor) 13 an MCT-1 (multiple copies in a T-cell
            malignancies) pseudogene and five CpG islands, complete
            sequence
          Length = 79419

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 101  ttatttacctatgaatgaga 120
            ||||||||||||||||||||
Sbjct: 3737 ttatttacctatgaatgaga 3718
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>gb|AC118584.18| Papio anubis clone rp41-78d16, complete sequence
          Length = 189610

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    cttggtttttatgcacattt 183
              ||||||||||||||||||||
Sbjct: 183304 cttggtttttatgcacattt 183285
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>gb|AF440619.1|AF440619 Homo sapiens 13q14 chronic lymphocytic leukemia suppressor locus section
              1 of 2
          Length = 350000

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      ctttctgctaaagaatgtat 20
              ||||||||||||||||||||
Sbjct: 122097 ctttctgctaaagaatgtat 122116
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>gb|AF279660.2|AF279660 Homo sapiens CAR (RFP2) gene, complete cds; DLEU2 and DLEU1 genes,
             complete sequence; and RPL18 and p48/Hip pseudogenes,
             complete sequence
          Length = 347503

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     ctttctgctaaagaatgtat 20
             ||||||||||||||||||||
Sbjct: 74395 ctttctgctaaagaatgtat 74414
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>emb|CR386340.1| Gallus gallus finished cDNA, clone ChEST731g19
          Length = 958

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 132 atttaatttctttacagaag 151
           ||||||||||||||||||||
Sbjct: 388 atttaatttctttacagaag 407
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>gb|AC069475.27| Homo sapiens chromosome 13 clone 317g11 map 13q14, complete sequence
          Length = 153092

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     ctttctgctaaagaatgtat 20
             ||||||||||||||||||||
Sbjct: 22710 ctttctgctaaagaatgtat 22729
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>gb|AC148674.1| Macaca mulatta Major Histocompatibility Complex BAC MMU103F20, complete
             sequence
          Length = 174172

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 354   ccacccatggctgtatacatggtc 377
             |||||||||| |||||||||||||
Sbjct: 32092 ccacccatggttgtatacatggtc 32115
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>gb|AF334404.1|AF334404 Homo sapiens chromosome 13q14 BAC clone CITB-369L16, complete sequence
          Length = 154868

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      ctttctgctaaagaatgtat 20
              ||||||||||||||||||||
Sbjct: 122097 ctttctgctaaagaatgtat 122116
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>gb|AC011246.6| Homo sapiens BAC clone RP11-498O20 from 2, complete sequence
          Length = 220183

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 191    gaagcacagcgatcacatca 210
              ||||||||||||||||||||
Sbjct: 108849 gaagcacagcgatcacatca 108868
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>dbj|AK174212.1| Ciona intestinalis cDNA, clone:cibd071i22, full insert sequence
          Length = 1401

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 489  attctgtagggcattgagat 508
            ||||||||||||||||||||
Sbjct: 1139 attctgtagggcattgagat 1120
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>emb|BX470160.9| Zebrafish DNA sequence from clone DKEY-25F3 in linkage group 18,
             complete sequence
          Length = 207501

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 168   gtttttatgcacatttccataatg 191
             |||||||||||||||| |||||||
Sbjct: 12219 gtttttatgcacattttcataatg 12196
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>emb|BX000480.6| Zebrafish DNA sequence from clone DKEY-14C5 in linkage group 17, complete
              sequence
          Length = 191781

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 254    aaccagtaatgccaataaaa 273
              ||||||||||||||||||||
Sbjct: 162590 aaccagtaatgccaataaaa 162571


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,134,262
Number of Sequences: 3902068
Number of extensions: 6134262
Number of successful extensions: 125181
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124937
Number of HSP's gapped (non-prelim): 244
length of query: 683
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 660
effective length of database: 17,143,297,704
effective search space: 11314576484640
effective search space used: 11314576484640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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