Clone Name | rbah61i06 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_450284.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2579 Score = 391 bits (197), Expect = e-105 Identities = 404/473 (85%) Strand = Plus / Minus Query: 207 atcatcgtctcgaatttctcgagtttcttcactcttcgcatcgatgcaaccagtaatgcc 266 ||||| ||||||||||| ||||||||||||||||| |||| ||| | || |||||| Sbjct: 2185 atcattgtctcgaatttgtcgagtttcttcactctctgcatagatcttatgagcaatgcc 2126 Query: 267 aataaaatgcctgcgccgacgaaagacccatttgcgactatttggtttccttgactagcc 326 || || ||||||||||| || |||||||| ||||| ||||||||||| ||||| ||| | Sbjct: 2125 aagaatatgcctgcgccaacaaaagacccgtttgccactatttggttcccttggctactc 2066 Query: 327 atgacgaccccaatattcaagagagtaccacccatggctgtatacatggtcgccatctga 386 | |||||||| ||||| || || ||||| ||||||||||||||||||||||| ||| Sbjct: 2065 aatgtgaccccaacgttcaacagcgtgccaccaatggctgtatacatggtcgccatttga 2006 Query: 387 agtacgttagctttacgagcagctcgttccgactcaagtactctgactctgagtttcagg 446 ||||| || || ||||||||||||| ||| |||||||||||||||||||| |||||||| Sbjct: 2005 agtacattcgccttacgagcagctctttcagactcaagtactctgactctaagtttcaga 1946 Query: 447 tcacccgactcgagttgccccacaaaatcctcgatccgttggattctgtagggcattgag 506 ||||| ||||| |||||||| ||||||||||| || || || |||||||||||||||||| Sbjct: 1945 tcaccggactcaagttgcccaacaaaatcctcaattcgctgtattctgtagggcattgag 1886 Query: 507 atcgtagaatcacgggcatcatttgcttgctttcttatctcctggactagttcaggtcca 566 || ||||| ||||| ||| ||||||||||||||||||||| |||||||||||||| || Sbjct: 1885 atggtagagtcacgagcactgtttgcttgctttcttatctcccggactagttcaggtgca 1826 Query: 567 gctcttcgtctcgttttcaagtctagcagttcctgtgcatatggtgcagcaactttgaca 626 | |||||||| |||||||||||| |||||||||||||| ||||| |||||||| ||| Sbjct: 1825 cttgttcgtctctgtttcaagtctagaagttcctgtgcataaggtgcggcaactttcaca 1766 Query: 627 aaggaaaaatcaggatccagtatgtacccgatgccttcaagagttgagaatgc 679 ||||||||||| ||||||| ||| || || || |||||||||||||||||||| Sbjct: 1765 aaggaaaaatctggatccaatatatatccaatcccttcaagagttgagaatgc 1713
>dbj|AK120335.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059I22, full insert sequence Length = 2579 Score = 383 bits (193), Expect = e-103 Identities = 403/473 (85%) Strand = Plus / Minus Query: 207 atcatcgtctcgaatttctcgagtttcttcactcttcgcatcgatgcaaccagtaatgcc 266 ||||| ||||||||||| ||||||||||||||||| |||| ||| | || |||||| Sbjct: 2185 atcattgtctcgaatttgtcgagtttcttcactctctgcatagatcttatgagcaatgcc 2126 Query: 267 aataaaatgcctgcgccgacgaaagacccatttgcgactatttggtttccttgactagcc 326 || || ||||||||||| || |||||||| ||||| ||||||||||| ||||| ||| | Sbjct: 2125 aagaatatgcctgcgccaacaaaagacccgtttgccactatttggttcccttggctactc 2066 Query: 327 atgacgaccccaatattcaagagagtaccacccatggctgtatacatggtcgccatctga 386 | |||||||| ||||| || || ||||| ||||||||||||||||||||||| ||| Sbjct: 2065 aatgtgaccccaacgttcaacagcgtgccaccaatggctgtatacatggtcgccatttga 2006 Query: 387 agtacgttagctttacgagcagctcgttccgactcaagtactctgactctgagtttcagg 446 ||||| || || |||| |||||||| ||| |||||||||||||||||||| |||||||| Sbjct: 2005 agtacattcgccttactagcagctctttcagactcaagtactctgactctaagtttcaga 1946 Query: 447 tcacccgactcgagttgccccacaaaatcctcgatccgttggattctgtagggcattgag 506 ||||| ||||| |||||||| ||||||||||| || || || |||||||||||||||||| Sbjct: 1945 tcaccggactcaagttgcccaacaaaatcctcaattcgctgtattctgtagggcattgag 1886 Query: 507 atcgtagaatcacgggcatcatttgcttgctttcttatctcctggactagttcaggtcca 566 || ||||| ||||| ||| ||||||||||||||||||||| |||||||||||||| || Sbjct: 1885 atggtagagtcacgagcactgtttgcttgctttcttatctcccggactagttcaggtgca 1826 Query: 567 gctcttcgtctcgttttcaagtctagcagttcctgtgcatatggtgcagcaactttgaca 626 | |||||||| |||||||||||| |||||||||||||| ||||| |||||||| ||| Sbjct: 1825 cttgttcgtctctgtttcaagtctagaagttcctgtgcataaggtgcggcaactttcaca 1766 Query: 627 aaggaaaaatcaggatccagtatgtacccgatgccttcaagagttgagaatgc 679 ||||||||||| ||||||| ||| || || || |||||||||||||||||||| Sbjct: 1765 aaggaaaaatctggatccaatatatatccaatcccttcaagagttgagaatgc 1713
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 115 bits (58), Expect = 2e-22 Identities = 91/102 (89%) Strand = Plus / Minus Query: 419 ctcaagtactctgactctgagtttcaggtcacccgactcgagttgccccacaaaatcctc 478 |||||||||||||||||| |||||||| ||||| ||||| |||||||| ||||||||||| Sbjct: 3807556 ctcaagtactctgactctaagtttcagatcaccggactcaagttgcccaacaaaatcctc 3807497 Query: 479 gatccgttggattctgtagggcattgagatcgtagaatcacg 520 || || || |||||||||||||||||||| ||||| ||||| Sbjct: 3807496 aattcgctgtattctgtagggcattgagatggtagagtcacg 3807455 Score = 97.6 bits (49), Expect = 5e-17 Identities = 121/145 (83%) Strand = Plus / Minus Query: 276 cctgcgccgacgaaagacccatttgcgactatttggtttccttgactagccatgacgacc 335 |||||||| || |||||||| ||||| ||||||||||| ||||| ||| || |||| Sbjct: 3808066 cctgcgccaacaaaagacccgtttgccactatttggttcccttggctactcaatgtgacc 3808007 Query: 336 ccaatattcaagagagtaccacccatggctgtatacatggtcgccatctgaagtacgtta 395 |||| ||||| || || ||||| ||||||||||||||||||||||| |||||||| || Sbjct: 3808006 ccaacgttcaacagcgtgccaccaatggctgtatacatggtcgccatttgaagtacattc 3807947 Query: 396 gctttacgagcagctcgttccgact 420 || ||||||||||||| ||| |||| Sbjct: 3807946 gccttacgagcagctctttcagact 3807922 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 528 tttgcttgctttcttatctcctggactagttcaggtccagctcttcgtctcgttttcaag 587 ||||||||||||||||||||| |||||||||||||| || | |||||||| ||||||| Sbjct: 3807329 tttgcttgctttcttatctcccggactagttcaggtgcacttgttcgtctctgtttcaag 3807270 Query: 588 tctagcagttcctg 601 ||||| |||||||| Sbjct: 3807269 tctagaagttcctg 3807256 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 598 cctgtgcatatggtgcagcaactttgacaaaggaaaaatcaggatcca 645 |||||||||| ||||| |||||||| |||||||||||||| ||||||| Sbjct: 3807008 cctgtgcataaggtgcggcaactttcacaaaggaaaaatctggatcca 3806961 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 207 atcatcgtctcgaatttctcgagtttcttcactct 241 ||||| ||||||||||| ||||||||||||||||| Sbjct: 3808381 atcattgtctcgaatttgtcgagtttcttcactct 3808347 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 660 ccttcaagagttgagaatgc 679 |||||||||||||||||||| Sbjct: 3806616 ccttcaagagttgagaatgc 3806597
>dbj|AP005905.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1080A02 Length = 151360 Score = 115 bits (58), Expect = 2e-22 Identities = 91/102 (89%) Strand = Plus / Minus Query: 419 ctcaagtactctgactctgagtttcaggtcacccgactcgagttgccccacaaaatcctc 478 |||||||||||||||||| |||||||| ||||| ||||| |||||||| ||||||||||| Sbjct: 47072 ctcaagtactctgactctaagtttcagatcaccggactcaagttgcccaacaaaatcctc 47013 Query: 479 gatccgttggattctgtagggcattgagatcgtagaatcacg 520 || || || |||||||||||||||||||| ||||| ||||| Sbjct: 47012 aattcgctgtattctgtagggcattgagatggtagagtcacg 46971 Score = 97.6 bits (49), Expect = 5e-17 Identities = 121/145 (83%) Strand = Plus / Minus Query: 276 cctgcgccgacgaaagacccatttgcgactatttggtttccttgactagccatgacgacc 335 |||||||| || |||||||| ||||| ||||||||||| ||||| ||| || |||| Sbjct: 47582 cctgcgccaacaaaagacccgtttgccactatttggttcccttggctactcaatgtgacc 47523 Query: 336 ccaatattcaagagagtaccacccatggctgtatacatggtcgccatctgaagtacgtta 395 |||| ||||| || || ||||| ||||||||||||||||||||||| |||||||| || Sbjct: 47522 ccaacgttcaacagcgtgccaccaatggctgtatacatggtcgccatttgaagtacattc 47463 Query: 396 gctttacgagcagctcgttccgact 420 || ||||||||||||| ||| |||| Sbjct: 47462 gccttacgagcagctctttcagact 47438 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 528 tttgcttgctttcttatctcctggactagttcaggtccagctcttcgtctcgttttcaag 587 ||||||||||||||||||||| |||||||||||||| || | |||||||| ||||||| Sbjct: 46845 tttgcttgctttcttatctcccggactagttcaggtgcacttgttcgtctctgtttcaag 46786 Query: 588 tctagcagttcctg 601 ||||| |||||||| Sbjct: 46785 tctagaagttcctg 46772 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 598 cctgtgcatatggtgcagcaactttgacaaaggaaaaatcaggatcca 645 |||||||||| ||||| |||||||| |||||||||||||| ||||||| Sbjct: 46524 cctgtgcataaggtgcggcaactttcacaaaggaaaaatctggatcca 46477 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 207 atcatcgtctcgaatttctcgagtttcttcactct 241 ||||| ||||||||||| ||||||||||||||||| Sbjct: 47897 atcattgtctcgaatttgtcgagtttcttcactct 47863 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 660 ccttcaagagttgagaatgc 679 |||||||||||||||||||| Sbjct: 46132 ccttcaagagttgagaatgc 46113
>gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0074L11, complete sequence Length = 180703 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 51 aagttacaacattttcaggaag 72 |||||||||||||||||||||| Sbjct: 22087 aagttacaacattttcaggaag 22108
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 51 aagttacaacattttcaggaag 72 |||||||||||||||||||||| Sbjct: 21670034 aagttacaacattttcaggaag 21670055 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 526 catttgcttgctttcttatct 546 ||||||||||||||||||||| Sbjct: 11244968 catttgcttgctttcttatct 11244988
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 51 aagttacaacattttcaggaag 72 |||||||||||||||||||||| Sbjct: 21980233 aagttacaacattttcaggaag 21980254 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 526 catttgcttgctttcttatct 546 ||||||||||||||||||||| Sbjct: 11324157 catttgcttgctttcttatct 11324177
>ref|NM_180205.1| Arabidopsis thaliana unknown protein AT3G07700 transcript variant AT3G07700.2 mRNA, complete cds Length = 2389 Score = 42.1 bits (21), Expect = 2.4 Identities = 51/61 (83%) Strand = Plus / Minus Query: 364 ctgtatacatggtcgccatctgaagtacgttagctttacgagcagctcgttccgactcaa 423 |||||||||| ||||||||||| |||| | ||||| || || |||| ||||||||||| Sbjct: 2023 ctgtatacatcgtcgccatctgcagtattgtcgctttccgggctgctctttccgactcaa 1964 Query: 424 g 424 | Sbjct: 1963 g 1963 Score = 40.1 bits (20), Expect = 9.3 Identities = 71/88 (80%) Strand = Plus / Minus Query: 594 agttcctgtgcatatggtgcagcaactttgacaaaggaaaaatcaggatccagtatgtac 653 |||||||| ||||| || || ||||| || ||||||||||| || ||||| || ||||| Sbjct: 1793 agttcctgcgcataaggagccgcaaccttcacaaaggaaaattctggatcaaggatgtaa 1734 Query: 654 ccgatgccttcaagagttgagaatgctc 681 || || || ||||| || || ||||||| Sbjct: 1733 ccaataccctcaagtgtggaaaatgctc 1706
>ref|NM_111649.2| Arabidopsis thaliana unknown protein AT3G07700 transcript variant AT3G07700.1 mRNA, complete cds Length = 2478 Score = 42.1 bits (21), Expect = 2.4 Identities = 51/61 (83%) Strand = Plus / Minus Query: 364 ctgtatacatggtcgccatctgaagtacgttagctttacgagcagctcgttccgactcaa 423 |||||||||| ||||||||||| |||| | ||||| || || |||| ||||||||||| Sbjct: 2112 ctgtatacatcgtcgccatctgcagtattgtcgctttccgggctgctctttccgactcaa 2053 Query: 424 g 424 | Sbjct: 2052 g 2052 Score = 40.1 bits (20), Expect = 9.3 Identities = 71/88 (80%) Strand = Plus / Minus Query: 594 agttcctgtgcatatggtgcagcaactttgacaaaggaaaaatcaggatccagtatgtac 653 |||||||| ||||| || || ||||| || ||||||||||| || ||||| || ||||| Sbjct: 1882 agttcctgcgcataaggagccgcaaccttcacaaaggaaaattctggatcaaggatgtaa 1823 Query: 654 ccgatgccttcaagagttgagaatgctc 681 || || || ||||| || || ||||||| Sbjct: 1822 ccaataccctcaagtgtggaaaatgctc 1795
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 526 catttgcttgctttcttatct 546 ||||||||||||||||||||| Sbjct: 31326 catttgcttgctttcttatct 31346
>gb|AY080823.1| Arabidopsis thaliana unknown protein (At3g07700) mRNA, partial cds Length = 1897 Score = 42.1 bits (21), Expect = 2.4 Identities = 51/61 (83%) Strand = Plus / Minus Query: 364 ctgtatacatggtcgccatctgaagtacgttagctttacgagcagctcgttccgactcaa 423 |||||||||| ||||||||||| |||| | ||||| || || |||| ||||||||||| Sbjct: 1540 ctgtatacatcgtcgccatctgcagtattgtcgctttccgggctgctctttccgactcaa 1481 Query: 424 g 424 | Sbjct: 1480 g 1480 Score = 40.1 bits (20), Expect = 9.3 Identities = 71/88 (80%) Strand = Plus / Minus Query: 594 agttcctgtgcatatggtgcagcaactttgacaaaggaaaaatcaggatccagtatgtac 653 |||||||| ||||| || || ||||| || ||||||||||| || ||||| || ||||| Sbjct: 1310 agttcctgcgcataaggagccgcaaccttcacaaaggaaaattctggatcaaggatgtaa 1251 Query: 654 ccgatgccttcaagagttgagaatgctc 681 || || || ||||| || || ||||||| Sbjct: 1250 ccaataccctcaagtgtggaaaatgctc 1223
>emb|CR385046.9| Zebrafish DNA sequence from clone CH211-217P23 in linkage group 8, complete sequence Length = 206751 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 168 gtttttatgcacatttccataatga 192 ||||||||||||||||||| ||||| Sbjct: 145193 gtttttatgcacatttccaaaatga 145169
>gb|AC022536.13| Homo sapiens chromosome 10 clone RP11-38M7, complete sequence Length = 160678 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 100 attatttacctatgaatgagaaagc 124 ||||||||||| ||||||||||||| Sbjct: 65756 attatttacctctgaatgagaaagc 65732
>emb|BX663519.12| Zebrafish DNA sequence from clone DKEY-182M1 in linkage group 15, complete sequence Length = 164720 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 tttttatgcacatttccataa 189 ||||||||||||||||||||| Sbjct: 42341 tttttatgcacatttccataa 42361
>gb|AY056806.1| Arabidopsis thaliana At3g07700/F17A17.4 mRNA, complete cds Length = 2388 Score = 42.1 bits (21), Expect = 2.4 Identities = 51/61 (83%) Strand = Plus / Minus Query: 364 ctgtatacatggtcgccatctgaagtacgttagctttacgagcagctcgttccgactcaa 423 |||||||||| ||||||||||| |||| | ||||| || || |||| ||||||||||| Sbjct: 2022 ctgtatacatcgtcgccatctgcagtattgtcgctttccgggctgctctttccgactcaa 1963 Query: 424 g 424 | Sbjct: 1962 g 1962 Score = 40.1 bits (20), Expect = 9.3 Identities = 71/88 (80%) Strand = Plus / Minus Query: 594 agttcctgtgcatatggtgcagcaactttgacaaaggaaaaatcaggatccagtatgtac 653 |||||||| ||||| || || ||||| || ||||||||||| || ||||| || ||||| Sbjct: 1792 agttcctgcgcataaggagccgcaaccttcacaaaggaaaattctggatcaaggatgtaa 1733 Query: 654 ccgatgccttcaagagttgagaatgctc 681 || || || ||||| || || ||||||| Sbjct: 1732 ccaataccctcaagtgtggaaaatgctc 1705
>gb|AF119906.1|AF119906 Homo sapiens PRO2859 mRNA, complete cds Length = 1779 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 100 attatttacctatgaatgagaaagc 124 ||||||||||| ||||||||||||| Sbjct: 286 attatttacctctgaatgagaaagc 310
>emb|BX825965.1|CNS0A6HO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL76ZE08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 623 Score = 42.1 bits (21), Expect = 2.4 Identities = 51/61 (83%) Strand = Plus / Minus Query: 364 ctgtatacatggtcgccatctgaagtacgttagctttacgagcagctcgttccgactcaa 423 |||||||||| ||||||||||| |||| | ||||| || || |||| ||||||||||| Sbjct: 319 ctgtatacatcgtcgccatctgcagtattgtcgctttccgggctgctctttccgactcaa 260 Query: 424 g 424 | Sbjct: 259 g 259 Score = 40.1 bits (20), Expect = 9.3 Identities = 71/88 (80%) Strand = Plus / Minus Query: 594 agttcctgtgcatatggtgcagcaactttgacaaaggaaaaatcaggatccagtatgtac 653 |||||||| ||||| || || ||||| || ||||||||||| || ||||| || ||||| Sbjct: 89 agttcctgcgcataaggagccgcaaccttcacaaaggaaaattctggatcaaggatgtaa 30 Query: 654 ccgatgccttcaagagttgagaatgctc 681 || || || ||||| || || ||||||| Sbjct: 29 ccaataccctcaagtgtggaaaatgctc 2
>emb|BX825129.1|CNS0A66K Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL13ZE11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 684 Score = 42.1 bits (21), Expect = 2.4 Identities = 51/61 (83%) Strand = Plus / Minus Query: 364 ctgtatacatggtcgccatctgaagtacgttagctttacgagcagctcgttccgactcaa 423 |||||||||| ||||||||||| |||| | ||||| || || |||| ||||||||||| Sbjct: 341 ctgtatacatcgtcgccatctgcagtattgtcgctttccgggctgctctttccgactcaa 282 Query: 424 g 424 | Sbjct: 281 g 281 Score = 40.1 bits (20), Expect = 9.3 Identities = 71/88 (80%) Strand = Plus / Minus Query: 594 agttcctgtgcatatggtgcagcaactttgacaaaggaaaaatcaggatccagtatgtac 653 |||||||| ||||| || || ||||| || ||||||||||| || ||||| || ||||| Sbjct: 111 agttcctgcgcataaggagccgcaaccttcacaaaggaaaattctggatcaaggatgtaa 52 Query: 654 ccgatgccttcaagagttgagaatgctc 681 || || || ||||| || || ||||||| Sbjct: 51 ccaataccctcaagtgtggaaaatgctc 24
>gb|AY088788.1| Arabidopsis thaliana clone 95043 mRNA, complete sequence Length = 2430 Score = 42.1 bits (21), Expect = 2.4 Identities = 51/61 (83%) Strand = Plus / Minus Query: 364 ctgtatacatggtcgccatctgaagtacgttagctttacgagcagctcgttccgactcaa 423 |||||||||| ||||||||||| |||| | ||||| || || |||| ||||||||||| Sbjct: 2112 ctgtatacatcgtcgccatctgcagtattgtcgctttccgggctgctctttccgactcaa 2053 Query: 424 g 424 | Sbjct: 2052 g 2052 Score = 40.1 bits (20), Expect = 9.3 Identities = 71/88 (80%) Strand = Plus / Minus Query: 594 agttcctgtgcatatggtgcagcaactttgacaaaggaaaaatcaggatccagtatgtac 653 |||||||| ||||| || || ||||| || ||||||||||| || ||||| || ||||| Sbjct: 1882 agttcctgcgcataaggagccgcaaccttcacaaaggaaaattctggatcaaggatgtaa 1823 Query: 654 ccgatgccttcaagagttgagaatgctc 681 || || || ||||| || || ||||||| Sbjct: 1822 ccaataccctcaagtgtggaaaatgctc 1795
>dbj|AK120763.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007G17, full insert sequence Length = 4190 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 526 catttgcttgctttcttatct 546 ||||||||||||||||||||| Sbjct: 2359 catttgcttgctttcttatct 2379
>gb|AC174769.1| Gasterosteus aculeatus clone VMRC28-49K14, complete sequence Length = 135249 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 611 tgcagcaactttgacaaaggaaaaa 635 ||||||| ||||||||||||||||| Sbjct: 11946 tgcagcagctttgacaaaggaaaaa 11970
>gb|AC132871.7| Mus musculus chromosome 1, clone RP24-387A12, complete sequence Length = 188649 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 tctacatatattatttacct 110 |||||||||||||||||||| Sbjct: 92231 tctacatatattatttacct 92212
>emb|AL357140.33| Human DNA sequence from clone RP11-84A14 on chromosome 1 Contains the 5' end of the CLSTN1 gene for calsyntenin 1, the CTNNBIP1 gene for catenin, beta interacting protein 1, two novel genes, the LZIC gene for leucine zipper and CTNNBIP1 domain containing, the 5' end of the NMNAT1 gene for nicotinamide nucleotide adenylyltransferase 1 and a CpG island, complete sequence Length = 177470 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 atatattatttacctatgaa 115 |||||||||||||||||||| Sbjct: 21028 atatattatttacctatgaa 21047
>emb|AL137060.13| Human DNA sequence from clone RP11-34F20 on chromosome 13 Contains the 3' end of the RFP2 gene for ret finger protein 2, the DLEU2 gene for deleted in lymphocytic leukemia 2 (LEU2 BCMSUN), the 5' end of the DLEU1 gene for deleted in lymphocytic leukemia 1 (BCMS LEU1), a ribosomal protein L18 (RPL18) pseudogene, a novel gene and four CpG islands, complete sequence Length = 154887 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ctttctgctaaagaatgtat 20 |||||||||||||||||||| Sbjct: 64909 ctttctgctaaagaatgtat 64928
>emb|AL110115.38|HSJ324O17 Human DNA sequence from clone RP3-324O17 on chromosome 20 Contains the 5' end of the ID1 gene for inhibitor of DNA binding 1, dominant negative helix-loop-helix protein, two novel genes, the 3' end of the HM13 gene for histocompatibility (minor) 13 an MCT-1 (multiple copies in a T-cell malignancies) pseudogene and five CpG islands, complete sequence Length = 79419 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 ttatttacctatgaatgaga 120 |||||||||||||||||||| Sbjct: 3737 ttatttacctatgaatgaga 3718
>gb|AC118584.18| Papio anubis clone rp41-78d16, complete sequence Length = 189610 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 cttggtttttatgcacattt 183 |||||||||||||||||||| Sbjct: 183304 cttggtttttatgcacattt 183285
>gb|AF440619.1|AF440619 Homo sapiens 13q14 chronic lymphocytic leukemia suppressor locus section 1 of 2 Length = 350000 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ctttctgctaaagaatgtat 20 |||||||||||||||||||| Sbjct: 122097 ctttctgctaaagaatgtat 122116
>gb|AF279660.2|AF279660 Homo sapiens CAR (RFP2) gene, complete cds; DLEU2 and DLEU1 genes, complete sequence; and RPL18 and p48/Hip pseudogenes, complete sequence Length = 347503 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ctttctgctaaagaatgtat 20 |||||||||||||||||||| Sbjct: 74395 ctttctgctaaagaatgtat 74414
>emb|CR386340.1| Gallus gallus finished cDNA, clone ChEST731g19 Length = 958 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 atttaatttctttacagaag 151 |||||||||||||||||||| Sbjct: 388 atttaatttctttacagaag 407
>gb|AC069475.27| Homo sapiens chromosome 13 clone 317g11 map 13q14, complete sequence Length = 153092 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ctttctgctaaagaatgtat 20 |||||||||||||||||||| Sbjct: 22710 ctttctgctaaagaatgtat 22729
>gb|AC148674.1| Macaca mulatta Major Histocompatibility Complex BAC MMU103F20, complete sequence Length = 174172 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 ccacccatggctgtatacatggtc 377 |||||||||| ||||||||||||| Sbjct: 32092 ccacccatggttgtatacatggtc 32115
>gb|AF334404.1|AF334404 Homo sapiens chromosome 13q14 BAC clone CITB-369L16, complete sequence Length = 154868 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ctttctgctaaagaatgtat 20 |||||||||||||||||||| Sbjct: 122097 ctttctgctaaagaatgtat 122116
>gb|AC011246.6| Homo sapiens BAC clone RP11-498O20 from 2, complete sequence Length = 220183 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 gaagcacagcgatcacatca 210 |||||||||||||||||||| Sbjct: 108849 gaagcacagcgatcacatca 108868
>dbj|AK174212.1| Ciona intestinalis cDNA, clone:cibd071i22, full insert sequence Length = 1401 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 attctgtagggcattgagat 508 |||||||||||||||||||| Sbjct: 1139 attctgtagggcattgagat 1120
>emb|BX470160.9| Zebrafish DNA sequence from clone DKEY-25F3 in linkage group 18, complete sequence Length = 207501 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 168 gtttttatgcacatttccataatg 191 |||||||||||||||| ||||||| Sbjct: 12219 gtttttatgcacattttcataatg 12196
>emb|BX000480.6| Zebrafish DNA sequence from clone DKEY-14C5 in linkage group 17, complete sequence Length = 191781 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 aaccagtaatgccaataaaa 273 |||||||||||||||||||| Sbjct: 162590 aaccagtaatgccaataaaa 162571 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,134,262 Number of Sequences: 3902068 Number of extensions: 6134262 Number of successful extensions: 125181 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 124937 Number of HSP's gapped (non-prelim): 244 length of query: 683 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 660 effective length of database: 17,143,297,704 effective search space: 11314576484640 effective search space used: 11314576484640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)