Clone Name | rbah61i05 |
---|---|
Clone Library Name | barley_pub |
>RL132_BRANA (P41129) 60S ribosomal protein L13-2 (Cold-induced protein C24B)| Length = 206 Score = 171 bits (433), Expect = 2e-42 Identities = 87/112 (77%), Positives = 98/112 (87%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 GIPKKLAPTIGIS+DHRRKNRSLEG+QSN+QRLKTYKAKLVIFPRRARKVKAGDST EEL Sbjct: 83 GIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEEL 142 Query: 474 ATATQVQGDYMPITRGEKRLVELMKVTEXMKAFKAYGKLCVERMNQRQLGAR 319 A ATQVQGDYMPI R EK+ +EL+K+T MK+ AY K+ +ER N+R GAR Sbjct: 143 ANATQVQGDYMPIVR-EKQAMELVKLTSEMKSVNAYDKIRLERTNKRHAGAR 193
>RL131_BRANA (P41128) 60S ribosomal protein L13-1 (Cold-induced protein C24A)| Length = 206 Score = 170 bits (431), Expect = 3e-42 Identities = 87/112 (77%), Positives = 97/112 (86%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 GIPKKLAPTIGI+VDHRRKNRSLEG+QSN+QRLKTYKAKLVIFPRRARKVKAGDST EEL Sbjct: 83 GIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEEL 142 Query: 474 ATATQVQGDYMPITRGEKRLVELMKVTEXMKAFKAYGKLCVERMNQRQLGAR 319 A ATQVQGDYMPI R EK EL+K+T MK+ KA+ K+ +ER N+R GAR Sbjct: 143 ANATQVQGDYMPIVR-EKHATELVKLTTEMKSVKAFDKIRLERTNKRHAGAR 193
>RL13_ARATH (P41127) 60S ribosomal protein L13 (BBC1 protein homolog)| Length = 206 Score = 168 bits (426), Expect = 1e-41 Identities = 85/112 (75%), Positives = 98/112 (87%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 GIPKKLAPTIGI+VDHRRKNRSLEG+Q+N+QRLKTYK KLVIFPRRARKVKAGDST EEL Sbjct: 83 GIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEEL 142 Query: 474 ATATQVQGDYMPITRGEKRLVELMKVTEXMKAFKAYGKLCVERMNQRQLGAR 319 A ATQVQGDY+PI R EK +EL+K+T MK+FKA+ K+ +ER N+R GAR Sbjct: 143 ANATQVQGDYLPIVR-EKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGAR 193
>RL13_TOBAC (P49627) 60S ribosomal protein L13 (Clone 6.2.1)| Length = 202 Score = 125 bits (315), Expect = 8e-29 Identities = 66/112 (58%), Positives = 82/112 (73%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 GIPKKLAPTIGI+VDHRR+NRSLEG+Q+N+QRL+ + +LV+FPRRA + + Sbjct: 79 GIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNC 138 Query: 474 ATATQVQGDYMPITRGEKRLVELMKVTEXMKAFKAYGKLCVERMNQRQLGAR 319 TATQV G YMPI R EK + L KV + MK+F AY KL VER N+R +GAR Sbjct: 139 LTATQVHGAYMPIER-EKHQLILSKVLKKMKSFNAYAKLRVERTNERHIGAR 189
>RL13_CHLSW (O48513) 60S ribosomal protein L13 (BBC1 protein homolog)| Length = 208 Score = 122 bits (307), Expect = 7e-28 Identities = 60/112 (53%), Positives = 83/112 (74%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 GIP K APT+GI+VDHRRKNRSLE +Q+N+QRLKTY+A LVIFPR +K KA +++ + Sbjct: 84 GIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADC 143 Query: 474 ATATQVQGDYMPITRGEKRLVELMKVTEXMKAFKAYGKLCVERMNQRQLGAR 319 + A+Q +G+ +P+ +G K +EL+K+T MK YGKL +ER+N R G R Sbjct: 144 SAASQAKGELLPL-KGTKPALELVKITADMKEGSQYGKLRIERVNARLKGMR 194
>RL13_BRARE (Q90Z10) 60S ribosomal protein L13| Length = 210 Score = 111 bits (278), Expect = 2e-24 Identities = 60/112 (53%), Positives = 76/112 (67%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 GI KK+A TIGISVD RR+NRS E +Q+N+QRLK Y+ KL+IFPR+A K K GDST EEL Sbjct: 84 GINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEEL 143 Query: 474 ATATQVQGDYMPITRGEKRLVELMKVTEXMKAFKAYGKLCVERMNQRQLGAR 319 ATQ+ G MPI + K+ + ++E K FKA+ L + R N R G R Sbjct: 144 KMATQLTGPVMPIKKVHKK-EKARVISEDEKNFKAFASLRMARANARLFGIR 194
>RL13_RAT (P41123) 60S ribosomal protein L13| Length = 210 Score = 105 bits (261), Expect = 2e-22 Identities = 56/112 (50%), Positives = 74/112 (66%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 GI KK+A TIGISVD RR+N+S E +Q+N+QRLK Y++KL++FPR+ K GDS+ EEL Sbjct: 84 GIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEEL 143 Query: 474 ATATQVQGDYMPITRGEKRLVELMKVTEXMKAFKAYGKLCVERMNQRQLGAR 319 ATQ+ G MPI R + + +TE K FKA+ L + R N R G R Sbjct: 144 KLATQLTGPVMPI-RNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIR 194
>RL13_DROME (P41126) 60S ribosomal protein L13 (BBC1 protein homolog)| Length = 218 Score = 104 bits (259), Expect = 3e-22 Identities = 53/112 (47%), Positives = 74/112 (66%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 GI A TIGI+VD RRKN+SLE Q NIQRLK Y++KL++FP +K++AG+S+ EE Sbjct: 84 GIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLEEC 143 Query: 474 ATATQVQGDYMPITRGEKRLVELMKVTEXMKAFKAYGKLCVERMNQRQLGAR 319 ATQ++G +PI + +VE +VT+ K FKA+ L R + R +G R Sbjct: 144 KLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDARLVGIR 195
>RL13_MOUSE (P47963) 60S ribosomal protein L13 (A52)| Length = 210 Score = 104 bits (259), Expect = 3e-22 Identities = 56/112 (50%), Positives = 74/112 (66%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 GI KK+A TIGISVD RR+N+S E +Q+N+QRLK Y++KL++FPR+ K GDS+ EEL Sbjct: 84 GIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEEL 143 Query: 474 ATATQVQGDYMPITRGEKRLVELMKVTEXMKAFKAYGKLCVERMNQRQLGAR 319 ATQ+ G MPI R + + +TE K FKA+ L + R N R G R Sbjct: 144 KLATQLTGPVMPI-RNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 194
>RL13_HUMAN (P26373) 60S ribosomal protein L13 (Breast basic conserved protein| 1) Length = 210 Score = 103 bits (258), Expect = 3e-22 Identities = 55/112 (49%), Positives = 74/112 (66%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 GI KK+A TIGISVD RR+N+S E +Q+N+QRLK Y++KL++FPR+ K GDS+ EEL Sbjct: 84 GIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEEL 143 Query: 474 ATATQVQGDYMPITRGEKRLVELMKVTEXMKAFKAYGKLCVERMNQRQLGAR 319 ATQ+ G MP+ R + + +TE K FKA+ L + R N R G R Sbjct: 144 KLATQLTGPVMPV-RNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 194
>RL13_BOVIN (Q56JZ1) 60S ribosomal protein L13| Length = 210 Score = 102 bits (254), Expect = 1e-21 Identities = 55/112 (49%), Positives = 73/112 (65%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 GI KK+A TIGISVD RR+N+ E +Q+N+QRLK Y++KL++FPR+ K GDS+ EEL Sbjct: 84 GIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEEL 143 Query: 474 ATATQVQGDYMPITRGEKRLVELMKVTEXMKAFKAYGKLCVERMNQRQLGAR 319 ATQ+ G MPI R + + +TE K FKA+ L + R N R G R Sbjct: 144 KLATQLTGPVMPI-RNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 194
>RL13_CHICK (P41125) 60S ribosomal protein L13 (Breast basic conserved protein| 1) Length = 210 Score = 101 bits (252), Expect = 2e-21 Identities = 55/112 (49%), Positives = 73/112 (65%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 GI K+ A TIGISVD RR+N+S E +Q+N+QRLK Y++KL++FPR+ K GDS+ EEL Sbjct: 84 GINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEEL 143 Query: 474 ATATQVQGDYMPITRGEKRLVELMKVTEXMKAFKAYGKLCVERMNQRQLGAR 319 ATQ+ G MPI KR + ++E K FKA+ L + R N R G R Sbjct: 144 KMATQLSGPVMPIRNVFKR-EKARVISEEEKNFKAFASLRMARANARLFGIR 194
>RL13_CRIGR (Q9Z313) 60S ribosomal protein L13| Length = 210 Score = 100 bits (250), Expect = 3e-21 Identities = 55/112 (49%), Positives = 73/112 (65%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 GI KK+A TIGISVD RR+N+S E +Q+N+QRLK Y++KL++FPR+ K GDS+ EEL Sbjct: 84 GIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEEL 143 Query: 474 ATATQVQGDYMPITRGEKRLVELMKVTEXMKAFKAYGKLCVERMNQRQLGAR 319 ATQ+ G M I R + + +TE K FKA+ L + R N R G R Sbjct: 144 KLATQLTGPVMRI-RNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 194
>RL13_ICTPU (Q90YV5) 60S ribosomal protein L13| Length = 210 Score = 99.8 bits (247), Expect = 6e-21 Identities = 54/112 (48%), Positives = 71/112 (63%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 GI K++A TIGI+VD RR+NRS E + N+QRLK Y++KL++FPR+ K GDST EE+ Sbjct: 84 GINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEV 143 Query: 474 ATATQVQGDYMPITRGEKRLVELMKVTEXMKAFKAYGKLCVERMNQRQLGAR 319 ATQ+ G MPI K+ M +TE K F A+ L + R N R G R Sbjct: 144 KMATQLTGPVMPIKIVHKKEKARM-ITEEEKKFNAFANLRMARANARLFGIR 194
>RL13_SCHPO (O74175) 60S ribosomal protein L13| Length = 208 Score = 89.0 bits (219), Expect = 1e-17 Identities = 49/112 (43%), Positives = 69/112 (61%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 G+ +++A TIGI VDHRR+NRS E +Q N++R+K Y A L++FPR+A + K GD+T Sbjct: 84 GVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSG 143 Query: 474 ATATQVQGDYMPITRGEKRLVELMKVTEXMKAFKAYGKLCVERMNQRQLGAR 319 A T V +PIT ++ + E +TE K F A+ L ER R GAR Sbjct: 144 AEQTDVAA-VLPIT--QEAVEEAKPITEEAKNFNAFSTLSNERAYARYAGAR 192
>RL13_LUMRU (O46157) 60S ribosomal protein L13| Length = 188 Score = 87.8 bits (216), Expect = 3e-17 Identities = 47/112 (41%), Positives = 71/112 (63%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 GI KK A IGISVD RR+N+S+E +Q N+QRLK Y++KL++FP++ K GD+T EE+ Sbjct: 61 GINKKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEEEM 120 Query: 474 ATATQVQGDYMPITRGEKRLVELMKVTEXMKAFKAYGKLCVERMNQRQLGAR 319 ATQ++G +P T K + +T+ + K + +L R ++R G R Sbjct: 121 KLATQLKGKLLPRTAWIKP-EKARAITDEERKVKVFDRLRQARAHKRLAGKR 171
>RL13_CAEEL (P91128) 60S ribosomal protein L13| Length = 207 Score = 85.5 bits (210), Expect = 1e-16 Identities = 46/112 (41%), Positives = 71/112 (63%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 GI + A TIGI+VD RR N++ EG+++N RLK YKAKL++FP++A K GDS+ EEL Sbjct: 85 GISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEEL 144 Query: 474 ATATQVQGDYMPITRGEKRLVELMKVTEXMKAFKAYGKLCVERMNQRQLGAR 319 A Q++GD +P++ E +VT+ + + + L ER +++ G R Sbjct: 145 KVAAQLRGDVLPLSH-TITFDEPRQVTDAERKVEIFRLLRKERADKKYRGKR 195
>RL13_SCHMA (Q95043) 60S ribosomal protein L13 (BBC1 protein homolog)| Length = 184 Score = 84.3 bits (207), Expect = 3e-16 Identities = 41/80 (51%), Positives = 57/80 (71%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 G+ K A TIGI+VDHRR+N S+EG+Q N+ RLK YKAKL++FP K +A D+ +E+ Sbjct: 84 GLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAMDAKADEV 143 Query: 474 ATATQVQGDYMPITRGEKRL 415 ATQ++ +PIT+ KRL Sbjct: 144 KKATQLRRPVLPITQRAKRL 163
>RL13_SPOFR (Q962U1) 60S ribosomal protein L13| Length = 219 Score = 82.8 bits (203), Expect = 8e-16 Identities = 46/112 (41%), Positives = 70/112 (62%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 G+ A TIGI+VD RR+N+S+E +Q N+QRLK Y+A+L++FP + +KV G++ EE Sbjct: 84 GLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFP-KGKKVLKGEANEEER 142 Query: 474 ATATQVQGDYMPITRGEKRLVELMKVTEXMKAFKAYGKLCVERMNQRQLGAR 319 ATQ++G MP+ + + + +TE K FKAY L R + +G R Sbjct: 143 KLATQLRGPLMPVQQPAPKSI-ARAITEEEKDFKAYQYLRGARSIAKLVGIR 193
>RL13_CANAL (O59931) 60S ribosomal protein L13| Length = 202 Score = 60.1 bits (144), Expect = 6e-09 Identities = 42/112 (37%), Positives = 56/112 (50%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 GI K A TIGISVDHRR+N+S E +N+ RL+ YK+KLVIF +K KA + E Sbjct: 84 GIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFD---KKTKASEVASFEQ 140 Query: 474 ATATQVQGDYMPITRGEKRLVELMKVTEXMKAFKAYGKLCVERMNQRQLGAR 319 + P R VE+ + T AY L + R ++ G R Sbjct: 141 VDVSATFPVEQPAPESGLRAVEVPEQT-------AYRTLRLARNEKKYKGIR 185
>RL13A_YEAST (Q12690) 60S ribosomal protein L13-A| Length = 199 Score = 59.7 bits (143), Expect = 7e-09 Identities = 32/82 (39%), Positives = 49/82 (59%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 G+ A TIGI+VDHRR+NR+ E +N+QRLK Y++K+++FPR + +A E++ Sbjct: 84 GLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNGKAPEA-----EQV 138 Query: 474 ATATQVQGDYMPITRGEKRLVE 409 +A P T E R V+ Sbjct: 139 LSAAATFPIAQPATDVEARAVQ 160
>RL13B_YEAST (P40212) 60S ribosomal protein L13-B| Length = 199 Score = 58.9 bits (141), Expect = 1e-08 Identities = 32/82 (39%), Positives = 49/82 (59%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEEL 475 G+ A TIGI+VDHRR+NR+ E +N+QRLK Y++K+++FPR + +A E++ Sbjct: 84 GLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRDGKAPEA-----EQV 138 Query: 474 ATATQVQGDYMPITRGEKRLVE 409 +A P T E R V+ Sbjct: 139 LSAAATFPIAQPATDVEARAVQ 160
>RL13_SACEX (Q876B2) 60S ribosomal protein L13| Length = 199 Score = 55.8 bits (133), Expect = 1e-07 Identities = 23/48 (47%), Positives = 36/48 (75%) Frame = -2 Query: 654 GIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRAR 511 G+ A TIGI+VDHRR+N++ E + N+QRLK Y++K+++FPR + Sbjct: 84 GLTPAYARTIGIAVDHRRQNKNQEMFELNVQRLKEYQSKIIVFPRNGK 131
>FOSL2_MOUSE (P47930) Fos-related antigen 2| Length = 326 Score = 30.0 bits (66), Expect = 6.3 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 3/95 (3%) Frame = -2 Query: 630 TIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTXEELATATQVQG 451 TIG +V RR++ L + +R++ + KL R R+ EL Q + Sbjct: 105 TIGTTVGRRRRDEQLSPEEEEKRRIRRERNKLAAAKCRNRR--------RELTEKLQAET 156 Query: 450 DYMPITRG--EKRLVELMKVTEXMKAFK-AYGKLC 355 + + + +K + EL K E ++ K A+G +C Sbjct: 157 EELEEEKSGLQKEIAELQKEKEKLEFMKVAHGPVC 191 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,721,332 Number of Sequences: 219361 Number of extensions: 1501877 Number of successful extensions: 3492 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3420 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3479 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)