ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbah61i05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_463021.1| Oryza sativa (japonica cultivar-group), OSJNBa0008D12.6 mRNA Length = 1020 Score = 335 bits (169), Expect = 1e-88 Identities = 326/379 (86%) Strand = Plus / Minus Query: 277 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 336 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 713 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 654 Query: 337 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctnctcagt 396 ||||||||||||||| |||| |||||| | |||||||||||||||||||||| || || Sbjct: 653 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 594 Query: 397 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 456 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 593 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 534 Query: 457 gacctgggtggctgtggcaagttcctcangggtagaatcaccagccttaaccttgcgagc 516 |||||||||||| |||||||||||||| || |||||||||||||| ||||||||||| Sbjct: 533 gacctgggtggcagtggcaagttcctcggcagtggaatcaccagccttgaccttgcgagc 474 Query: 517 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgttagactg 576 |||||||||||||||||||||||| |||||||| |||||||| ||||| | |||| ||| Sbjct: 473 acgccttgggaagataaccagcttggccttgtatgtcttgagcctctggacattagcctg 414 Query: 577 cataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagc 636 | ||||||||||| | ||| || |||||||||||||| ||||| ||||| || ||||| Sbjct: 413 gagtccctcaagtgagcggttcttgcggcggtgatccacggaaattccaatggttggagc 354 Query: 637 tagcttcttcgggatgccc 655 |||||| ||||||||| Sbjct: 353 atacttcttggggatgccc 335 Score = 40.1 bits (20), Expect = 8.9 Identities = 31/35 (88%) Strand = Plus / Minus Query: 194 ctggtctctatttccagccgnaagacaaaatttag 228 |||||||||||||||||| || ||||||||||| Sbjct: 813 ctggtctctatttccagcacaaaaacaaaatttag 779
>gb|AY323130.1| Oryza sativa (japonica cultivar-group) ribosomal protein large subunit 13 mRNA, complete cds Length = 940 Score = 335 bits (169), Expect = 1e-88 Identities = 326/379 (86%) Strand = Plus / Minus Query: 277 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 336 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 701 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 642 Query: 337 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctnctcagt 396 ||||||||||||||| |||| |||||| | |||||||||||||||||||||| || || Sbjct: 641 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 582 Query: 397 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 456 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 581 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 522 Query: 457 gacctgggtggctgtggcaagttcctcangggtagaatcaccagccttaaccttgcgagc 516 |||||||||||| |||||||||||||| || |||||||||||||| ||||||||||| Sbjct: 521 gacctgggtggcagtggcaagttcctcggcagtggaatcaccagccttgaccttgcgagc 462 Query: 517 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgttagactg 576 |||||||||||||||||||||||| |||||||| |||||||| ||||| | |||| ||| Sbjct: 461 acgccttgggaagataaccagcttggccttgtatgtcttgagcctctggacattagcctg 402 Query: 577 cataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagc 636 | ||||||||||| | ||| || |||||||||||||| ||||| ||||| || ||||| Sbjct: 401 gagtccctcaagtgagcggttcttgcggcggtgatccacggaaattccaatggttggagc 342 Query: 637 tagcttcttcgggatgccc 655 |||||| ||||||||| Sbjct: 341 atacttcttggggatgccc 323 Score = 40.1 bits (20), Expect = 8.9 Identities = 31/35 (88%) Strand = Plus / Minus Query: 194 ctggtctctatttccagccgnaagacaaaatttag 228 |||||||||||||||||| || ||||||||||| Sbjct: 801 ctggtctctatttccagcacaaaaacaaaatttag 767
>emb|AJ272394.1|OSA272394 Oryza sativa mRNA for putative cold-induced protein (cip1 gene) Length = 900 Score = 335 bits (169), Expect = 1e-88 Identities = 326/379 (86%) Strand = Plus / Minus Query: 277 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 336 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 688 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 629 Query: 337 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctnctcagt 396 ||||||||||||||| |||| |||||| | |||||||||||||||||||||| || || Sbjct: 628 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 569 Query: 397 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 456 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 568 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 509 Query: 457 gacctgggtggctgtggcaagttcctcangggtagaatcaccagccttaaccttgcgagc 516 |||||||||||| |||||||||||||| || |||||||||||||| ||||||||||| Sbjct: 508 gacctgggtggcagtggcaagttcctcggcagtggaatcaccagccttgaccttgcgagc 449 Query: 517 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgttagactg 576 |||||||||||||||||||||||| |||||||| |||||||| ||||| | |||| ||| Sbjct: 448 acgccttgggaagataaccagcttggccttgtatgtcttgagcctctggacattagcctg 389 Query: 577 cataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagc 636 | ||||||||||||| ||| || |||||||| ||||| ||||| ||||| || ||||| Sbjct: 388 gagtccctcaagtgaccggttcttgcggcggtggtccacggaaattccaatggttggagc 329 Query: 637 tagcttcttcgggatgccc 655 |||||| ||||||||| Sbjct: 328 atacttcttggggatgccc 310 Score = 40.1 bits (20), Expect = 8.9 Identities = 31/35 (88%) Strand = Plus / Minus Query: 194 ctggtctctatttccagccgnaagacaaaatttag 228 |||||||||||||||||| || ||||||||||| Sbjct: 788 ctggtctctatttccagcacaaaaacaaaatttag 754
>dbj|AK104895.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-A02, full insert sequence Length = 906 Score = 335 bits (169), Expect = 1e-88 Identities = 326/379 (86%) Strand = Plus / Minus Query: 277 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 336 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 722 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 663 Query: 337 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctnctcagt 396 ||||||||||||||| |||| |||||| | |||||||||||||||||||||| || || Sbjct: 662 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 603 Query: 397 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 456 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 602 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 543 Query: 457 gacctgggtggctgtggcaagttcctcangggtagaatcaccagccttaaccttgcgagc 516 |||||||||||| |||||||||||||| || |||||||||||||| ||||||||||| Sbjct: 542 gacctgggtggcagtggcaagttcctcggcagtggaatcaccagccttgaccttgcgagc 483 Query: 517 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgttagactg 576 |||||||||||||||||||||||| |||||||| |||||||| ||||| | |||| ||| Sbjct: 482 acgccttgggaagataaccagcttggccttgtatgtcttgagcctctggacattagcctg 423 Query: 577 cataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagc 636 | ||||||||||| | ||| || |||||||||||||| ||||| ||||| || ||||| Sbjct: 422 gagtccctcaagtgagcggttcttgcggcggtgatccacggaaattccaatggttggagc 363 Query: 637 tagcttcttcgggatgccc 655 |||||| ||||||||| Sbjct: 362 atacttcttggggatgccc 344 Score = 40.1 bits (20), Expect = 8.9 Identities = 31/35 (88%) Strand = Plus / Minus Query: 194 ctggtctctatttccagccgnaagacaaaatttag 228 |||||||||||||||||| || ||||||||||| Sbjct: 822 ctggtctctatttccagcacaaaaacaaaatttag 788
>dbj|AK104259.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G09, full insert sequence Length = 1047 Score = 335 bits (169), Expect = 1e-88 Identities = 326/379 (86%) Strand = Plus / Minus Query: 277 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 336 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 719 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 660 Query: 337 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctnctcagt 396 ||||||||||||||| |||| |||||| | |||||||||||||||||||||| || || Sbjct: 659 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 600 Query: 397 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 456 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 599 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 540 Query: 457 gacctgggtggctgtggcaagttcctcangggtagaatcaccagccttaaccttgcgagc 516 |||||||||||| |||||||||||||| || |||||||||||||| ||||||||||| Sbjct: 539 gacctgggtggcagtggcaagttcctcggcagtggaatcaccagccttgaccttgcgagc 480 Query: 517 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgttagactg 576 |||||||||||||||||||||||| |||||||| |||||||| ||||| | |||| ||| Sbjct: 479 acgccttgggaagataaccagcttggccttgtatgtcttgagcctctggacattagcctg 420 Query: 577 cataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagc 636 | ||||||||||| | ||| || |||||||||||||| ||||| ||||| || ||||| Sbjct: 419 gagtccctcaagtgagcggttcttgcggcggtgatccacggaaattccaatggttggagc 360 Query: 637 tagcttcttcgggatgccc 655 |||||| ||||||||| Sbjct: 359 atacttcttggggatgccc 341 Score = 40.1 bits (20), Expect = 8.9 Identities = 31/35 (88%) Strand = Plus / Minus Query: 194 ctggtctctatttccagccgnaagacaaaatttag 228 |||||||||||||||||| || ||||||||||| Sbjct: 819 ctggtctctatttccagcacaaaaacaaaatttag 785
>dbj|AK070375.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054I18, full insert sequence Length = 919 Score = 335 bits (169), Expect = 1e-88 Identities = 326/379 (86%) Strand = Plus / Minus Query: 277 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 336 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 721 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 662 Query: 337 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctnctcagt 396 ||||||||||||||| |||| |||||| | |||||||||||||||||||||| || || Sbjct: 661 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 602 Query: 397 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 456 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 601 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 542 Query: 457 gacctgggtggctgtggcaagttcctcangggtagaatcaccagccttaaccttgcgagc 516 |||||||||||| |||||||||||||| || |||||||||||||| ||||||||||| Sbjct: 541 gacctgggtggcagtggcaagttcctcggcagtggaatcaccagccttgaccttgcgagc 482 Query: 517 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgttagactg 576 |||||||||||||||||||||||| |||||||| |||||||| ||||| | |||| ||| Sbjct: 481 acgccttgggaagataaccagcttggccttgtatgtcttgagcctctggacattagcctg 422 Query: 577 cataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagc 636 | ||||||||||| | ||| || |||||||||||||| ||||| ||||| || ||||| Sbjct: 421 gagtccctcaagtgagcggttcttgcggcggtgatccacggaaattccaatggttggagc 362 Query: 637 tagcttcttcgggatgccc 655 |||||| ||||||||| Sbjct: 361 atacttcttggggatgccc 343 Score = 40.1 bits (20), Expect = 8.9 Identities = 31/35 (88%) Strand = Plus / Minus Query: 194 ctggtctctatttccagccgnaagacaaaatttag 228 |||||||||||||||||| || ||||||||||| Sbjct: 821 ctggtctctatttccagcacaaaaacaaaatttag 787
>gb|AF487458.1| Triticum aestivum BBC1-like protein mRNA, complete cds Length = 867 Score = 329 bits (166), Expect = 7e-87 Identities = 329/384 (85%) Strand = Plus / Minus Query: 271 atcttatcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaag 330 |||| |||||||||| || |||||||| |||||||| ||||||||| | ||| || | Sbjct: 624 atctcatcacttcttctcctccttctccgcctcggcagccttcttctgcctggctcccaa 565 Query: 331 ctgccgctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctn 390 ||| |||||||||||||||||||| | ||||||||| |||||||||||| ||||||||| Sbjct: 564 ctggcgctggttcatcctctcgacgcggagcttgccataggccttgaactccttcatctc 505 Query: 391 ctcagtgaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtc 450 ||| |||||||||| || ||| || |||||||||| ||||| | ||| ||||| ||||| Sbjct: 504 ctctgtgaccttcacgacctcgactgagcgcttctcgccacgggcaatgggcatgtagtc 445 Query: 451 accctggacctgggtggctgtggcaagttcctcangggtagaatcaccagccttaacctt 510 |||||||||||| ||||| ||||||| ||||| | ||||| ||||||||||| ||||| Sbjct: 444 accctggacctgtgtggcgttggcaagctcctccggagtagagtcaccagccttgacctt 385 Query: 511 gcgagcacgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgtt 570 |||||||||||||||||||||||| ||||| |||||||| |||||||| | ||| || || Sbjct: 384 gcgagcacgccttgggaagataacaagcttggccttgtaggtcttgagccgctggatatt 325 Query: 571 agactgcataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagt 630 ||||||||||||||||| |||||||| || ||||| || ||||||||||||||||| || Sbjct: 324 ggactgcataccctcaagcgacctgttcttgcggcgatggtccacagaaatgccaatggt 265 Query: 631 aggagctagcttcttcgggatgcc 654 ||||| |||||||| |||||||| Sbjct: 264 cggagcgagcttctttgggatgcc 241
>dbj|AB051074.1| Oryza sativa (japonica cultivar-group) bbc1l mRNA for BBC1-like protein, complete cds Length = 705 Score = 327 bits (165), Expect = 3e-86 Identities = 324/379 (85%) Strand = Plus / Minus Query: 277 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 336 ||||||||| ||||||||||||||||| || ||| ||||| | ||||||||| || || Sbjct: 495 tcacttcttctcttccttctctgcctcagcagccctcttctggsgggcaccaacatggcg 436 Query: 337 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctnctcagt 396 ||||||||||||||| |||| |||||| | |||||||||||||||||||||| || || Sbjct: 435 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 376 Query: 397 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 456 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 375 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 316 Query: 457 gacctgggtggctgtggcaagttcctcangggtagaatcaccagccttaaccttgcgagc 516 |||||||||||| |||||||||||||| || ||||||| |||||| ||||||||||| Sbjct: 315 gacctgggtggcagtggcaagttcctcggcagtggaatcacyagccttgaccttgcgagc 256 Query: 517 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgttagactg 576 |||||||||||||||||||||||| |||||||| |||||||| ||||| | |||| ||| Sbjct: 255 acgccttgggaagataaccagcttggccttgtatgtcttgagcctctggacattagcctg 196 Query: 577 cataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagc 636 | ||||||||||| | ||| || |||||||||||||| ||||| ||||| || ||||| Sbjct: 195 gagtccctcaagtgagcggttcttgcggcggtgatccacggaaattccaatggttggagc 136 Query: 637 tagcttcttcgggatgccc 655 |||||| ||||||||| Sbjct: 135 atacttcttggggatgccc 117 Score = 40.1 bits (20), Expect = 8.9 Identities = 31/35 (88%) Strand = Plus / Minus Query: 194 ctggtctctatttccagccgnaagacaaaatttag 228 |||||||||||||||||| || ||||||||||| Sbjct: 595 ctggtctctatttccagcacaaaaacaaaatttag 561
>gb|DQ083184.1| Oryza sativa (indica cultivar-group) clone 4S3B53 mRNA sequence Length = 471 Score = 305 bits (154), Expect = 1e-79 Identities = 254/288 (88%) Strand = Plus / Minus Query: 277 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 336 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 326 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 267 Query: 337 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctnctcagt 396 ||||||||||||||| |||| |||||| | |||||||||||||||||||||| || || Sbjct: 266 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 207 Query: 397 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 456 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 206 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 147 Query: 457 gacctgggtggctgtggcaagttcctcangggtagaatcaccagccttaaccttgcgagc 516 |||||||||||| |||||||||||||| || |||||||||||||| ||||||||||| Sbjct: 146 gacctgggtggcagtggcaagttcctcggcagtggaatcaccagccttgaccttgcgagc 87 Query: 517 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctg 564 |||||||||||||||||||||||| |||||||| |||||||| ||||| Sbjct: 86 acgccttgggaagataaccagcttggccttgtatgtcttgagcctctg 39 Score = 40.1 bits (20), Expect = 8.9 Identities = 31/35 (88%) Strand = Plus / Minus Query: 194 ctggtctctatttccagccgnaagacaaaatttag 228 |||||||||||||||||| || ||||||||||| Sbjct: 426 ctggtctctatttccagcacaaaaacaaaatttag 392
>ref|NM_185433.2| Oryza sativa (japonica cultivar-group), mRNA Length = 906 Score = 272 bits (137), Expect = 1e-69 Identities = 297/351 (84%) Strand = Plus / Minus Query: 277 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 336 ||||||||| ||||||||||| |||||||| ||| ||||| |||||||| | || || Sbjct: 704 tcacttcttctcttccttctcagcctcggccgccctcttctgccgggcaccgatgtggcg 645 Query: 337 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctnctcagt 396 ||||||||||||||| || | |||||| ||||||||||||| |||||||| | || || Sbjct: 644 ctggttcatcctctccacgcgcagcttggcgtaggccttgaatgccttcatgtcatccgt 585 Query: 397 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 456 |||||||| || ||||||| |||||||||| ||||| || |||||||| ||||||||||| Sbjct: 584 gaccttcacgacctcaaccgagcgcttctcgccacgggtgataggcatgtagtcaccctg 525 Query: 457 gacctgggtggctgtggcaagttcctcangggtagaatcaccagccttaaccttgcgagc 516 ||||||||||||||||||||| |||||| | || || ||||||||||| |||||||| || Sbjct: 524 gacctgggtggctgtggcaagctcctcaggagtcgagtcaccagccttgaccttgcgggc 465 Query: 517 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgttagactg 576 ||| ||||||||||| || ||||| |||||||| ||||| || ||||| | || | ||| Sbjct: 464 acgtcttgggaagatgacaagcttggccttgtaggtcttcagcctctggacattggcctg 405 Query: 577 cataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaat 627 || ||| |||||||| | ||| ||||||||||||||||| || |||||||| Sbjct: 404 cagaccttcaagtgagcggttcttacggcggtgatccactgagatgccaat 354
>dbj|AK070995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078L22, full insert sequence Length = 906 Score = 272 bits (137), Expect = 1e-69 Identities = 297/351 (84%) Strand = Plus / Minus Query: 277 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 336 ||||||||| ||||||||||| |||||||| ||| ||||| |||||||| | || || Sbjct: 704 tcacttcttctcttccttctcagcctcggccgccctcttctgccgggcaccgatgtggcg 645 Query: 337 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctnctcagt 396 ||||||||||||||| || | |||||| ||||||||||||| |||||||| | || || Sbjct: 644 ctggttcatcctctccacgcgcagcttggcgtaggccttgaatgccttcatgtcatccgt 585 Query: 397 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 456 |||||||| || ||||||| |||||||||| ||||| || |||||||| ||||||||||| Sbjct: 584 gaccttcacgacctcaaccgagcgcttctcgccacgggtgataggcatgtagtcaccctg 525 Query: 457 gacctgggtggctgtggcaagttcctcangggtagaatcaccagccttaaccttgcgagc 516 ||||||||||||||||||||| |||||| | || || ||||||||||| |||||||| || Sbjct: 524 gacctgggtggctgtggcaagctcctcaggagtcgagtcaccagccttgaccttgcgggc 465 Query: 517 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgttagactg 576 ||| ||||||||||| || ||||| |||||||| ||||| || ||||| | || | ||| Sbjct: 464 acgtcttgggaagatgacaagcttggccttgtaggtcttcagcctctggacattggcctg 405 Query: 577 cataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaat 627 || ||| |||||||| | ||| ||||||||||||||||| || |||||||| Sbjct: 404 cagaccttcaagtgagcggttcttacggcggtgatccactgagatgccaat 354
>gb|AY109921.1| Zea mays CL187_21 mRNA sequence Length = 963 Score = 262 bits (132), Expect = 1e-66 Identities = 316/378 (83%) Strand = Plus / Minus Query: 277 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 336 |||||| ||||| |||||||||||||| || ||||||||| |||||||||||| || Sbjct: 656 tcacttgttttcatccttctctgcctcagccgccttcttctggcgggcaccaaggtgttt 597 Query: 337 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctnctcagt 396 || |||||||| ||| | || |||||||||||||||| |||| |||||||| ||||| Sbjct: 596 cttgttcatccgctcaagacggagcttgccgtaggccgcaaacgacttcatctcatcagt 537 Query: 397 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 456 ||||||| | ||| || |||||||||||||||||||||||||||| ||||||||||| Sbjct: 536 aaccttcacaacctcgactgagcgcttctcaccacgagtaataggcatgtagtcaccctg 477 Query: 457 gacctgggtggctgtggcaagttcctcangggtagaatcaccagccttaaccttgcgagc 516 |||||||||||| |||||||| ||||| | ||||| || || || || |||||||||| Sbjct: 476 gacctgggtggccgtggcaagctcctccggagtagagtcgccggcattggccttgcgagc 417 Query: 517 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgttagactg 576 |||||||||||||||||||||||| |||||||||||||| || ||||| | || | ||| Sbjct: 416 acgccttgggaagataaccagcttggccttgtacgtcttaagcctctggacattggcctg 357 Query: 577 cataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagc 636 || ||||| || || |||| || |||||||||||||||||||||||||| || || || Sbjct: 356 cagtccctcgagagatttgttcttgcggcggtgatccacagaaatgccaatggttggggc 297 Query: 637 tagcttcttcgggatgcc 654 |||||||| || ||||| Sbjct: 296 aagcttctttggaatgcc 279
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 216 bits (109), Expect = 7e-53 Identities = 197/227 (86%) Strand = Plus / Plus Query: 277 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 336 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 20894117 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 20894176 Query: 337 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctnctcagt 396 ||||||||||||||| |||| |||||| | |||||||||||||||||||||| || || Sbjct: 20894177 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 20894236 Query: 397 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 456 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 20894237 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 20894296 Query: 457 gacctgggtggctgtggcaagttcctcangggtagaatcaccagcct 503 |||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 20894297 gacctgggtggcagtggcaagttcctcggcagtggaatcaccagcct 20894343 Score = 125 bits (63), Expect = 2e-25 Identities = 132/155 (85%) Strand = Plus / Plus Query: 501 ccttaaccttgcgagcacgccttgggaagataaccagcttagccttgtacgtcttgagtc 560 |||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| | Sbjct: 20894430 ccttgaccttgcgagcacgccttgggaagataaccagcttggccttgtatgtcttgagcc 20894489 Query: 561 tctgaatgttagactgcataccctcaagtgacctgtttttacggcggtgatccacagaaa 620 |||| | |||| ||| | ||||||||||| | ||| || |||||||||||||| |||| Sbjct: 20894490 tctggacattagcctggagtccctcaagtgagcggttcttgcggcggtgatccacggaaa 20894549 Query: 621 tgccaatagtaggagctagcttcttcgggatgccc 655 | ||||| || ||||| |||||| ||||||||| Sbjct: 20894550 ttccaatggttggagcatacttcttggggatgccc 20894584 Score = 40.1 bits (20), Expect = 8.9 Identities = 31/35 (88%) Strand = Plus / Plus Query: 194 ctggtctctatttccagccgnaagacaaaatttag 228 |||||||||||||||||| || ||||||||||| Sbjct: 20894017 ctggtctctatttccagcacaaaaacaaaatttag 20894051
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 216 bits (109), Expect = 7e-53 Identities = 197/227 (86%) Strand = Plus / Plus Query: 277 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 336 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 20887146 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 20887205 Query: 337 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctnctcagt 396 ||||||||||||||| |||| |||||| | |||||||||||||||||||||| || || Sbjct: 20887206 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 20887265 Query: 397 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 456 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 20887266 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 20887325 Query: 457 gacctgggtggctgtggcaagttcctcangggtagaatcaccagcct 503 |||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 20887326 gacctgggtggcagtggcaagttcctcggcagtggaatcaccagcct 20887372 Score = 125 bits (63), Expect = 2e-25 Identities = 132/155 (85%) Strand = Plus / Plus Query: 501 ccttaaccttgcgagcacgccttgggaagataaccagcttagccttgtacgtcttgagtc 560 |||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| | Sbjct: 20887459 ccttgaccttgcgagcacgccttgggaagataaccagcttggccttgtatgtcttgagcc 20887518 Query: 561 tctgaatgttagactgcataccctcaagtgacctgtttttacggcggtgatccacagaaa 620 |||| | |||| ||| | ||||||||||| | ||| || |||||||||||||| |||| Sbjct: 20887519 tctggacattagcctggagtccctcaagtgagcggttcttgcggcggtgatccacggaaa 20887578 Query: 621 tgccaatagtaggagctagcttcttcgggatgccc 655 | ||||| || ||||| |||||| ||||||||| Sbjct: 20887579 ttccaatggttggagcatacttcttggggatgccc 20887613 Score = 40.1 bits (20), Expect = 8.9 Identities = 31/35 (88%) Strand = Plus / Plus Query: 194 ctggtctctatttccagccgnaagacaaaatttag 228 |||||||||||||||||| || ||||||||||| Sbjct: 20887046 ctggtctctatttccagcacaaaaacaaaatttag 20887080
>gb|AC146468.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0008D12 map MAP_LOC, complete sequence Length = 167323 Score = 216 bits (109), Expect = 7e-53 Identities = 197/227 (86%) Strand = Plus / Minus Query: 277 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 336 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 28395 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 28336 Query: 337 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctnctcagt 396 ||||||||||||||| |||| |||||| | |||||||||||||||||||||| || || Sbjct: 28335 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 28276 Query: 397 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 456 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 28275 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 28216 Query: 457 gacctgggtggctgtggcaagttcctcangggtagaatcaccagcct 503 |||||||||||| |||||||||||||| || ||||||||||||| Sbjct: 28215 gacctgggtggcagtggcaagttcctcggcagtggaatcaccagcct 28169 Score = 125 bits (63), Expect = 2e-25 Identities = 132/155 (85%) Strand = Plus / Minus Query: 501 ccttaaccttgcgagcacgccttgggaagataaccagcttagccttgtacgtcttgagtc 560 |||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| | Sbjct: 28082 ccttgaccttgcgagcacgccttgggaagataaccagcttggccttgtatgtcttgagcc 28023 Query: 561 tctgaatgttagactgcataccctcaagtgacctgtttttacggcggtgatccacagaaa 620 |||| | |||| ||| | ||||||||||| | ||| || |||||||||||||| |||| Sbjct: 28022 tctggacattagcctggagtccctcaagtgagcggttcttgcggcggtgatccacggaaa 27963 Query: 621 tgccaatagtaggagctagcttcttcgggatgccc 655 | ||||| || ||||| |||||| ||||||||| Sbjct: 27962 ttccaatggttggagcatacttcttggggatgccc 27928 Score = 40.1 bits (20), Expect = 8.9 Identities = 31/35 (88%) Strand = Plus / Minus Query: 194 ctggtctctatttccagccgnaagacaaaatttag 228 |||||||||||||||||| || ||||||||||| Sbjct: 28495 ctggtctctatttccagcacaaaaacaaaatttag 28461
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 192 bits (97), Expect = 1e-45 Identities = 194/227 (85%) Strand = Plus / Plus Query: 277 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 336 ||||||||| ||||||||||| |||||||| ||| ||||| |||||||| | || || Sbjct: 866728 tcacttcttctcttccttctcagcctcggccgccctcttctgccgggcaccgatgtggcg 866787 Query: 337 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctnctcagt 396 ||||||||||||||| || | |||||| ||||||||||||| |||||||| | || || Sbjct: 866788 ctggttcatcctctccacgcgcagcttggcgtaggccttgaatgccttcatgtcatccgt 866847 Query: 397 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 456 |||||||| || ||||||| |||||||||| ||||| || |||||||| ||||||||||| Sbjct: 866848 gaccttcacgacctcaaccgagcgcttctcgccacgggtgataggcatgtagtcaccctg 866907 Query: 457 gacctgggtggctgtggcaagttcctcangggtagaatcaccagcct 503 ||||||||||||||||||||| |||||| | || || |||||||||| Sbjct: 866908 gacctgggtggctgtggcaagctcctcaggagtcgagtcaccagcct 866954 Score = 85.7 bits (43), Expect = 2e-13 Identities = 106/127 (83%) Strand = Plus / Plus Query: 501 ccttaaccttgcgagcacgccttgggaagataaccagcttagccttgtacgtcttgagtc 560 |||| |||||||| ||||| ||||||||||| || ||||| |||||||| ||||| || | Sbjct: 867034 ccttgaccttgcgggcacgtcttgggaagatgacaagcttggccttgtaggtcttcagcc 867093 Query: 561 tctgaatgttagactgcataccctcaagtgacctgtttttacggcggtgatccacagaaa 620 |||| | || | ||||| ||| |||||||| | ||| ||||||||||||||||| || | Sbjct: 867094 tctggacattggcctgcagaccttcaagtgagcggttcttacggcggtgatccactgaga 867153 Query: 621 tgccaat 627 ||||||| Sbjct: 867154 tgccaat 867160
>dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0541H01 Length = 157519 Score = 192 bits (97), Expect = 1e-45 Identities = 194/227 (85%) Strand = Plus / Plus Query: 277 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 336 ||||||||| ||||||||||| |||||||| ||| ||||| |||||||| | || || Sbjct: 149862 tcacttcttctcttccttctcagcctcggccgccctcttctgccgggcaccgatgtggcg 149921 Query: 337 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctnctcagt 396 ||||||||||||||| || | |||||| ||||||||||||| |||||||| | || || Sbjct: 149922 ctggttcatcctctccacgcgcagcttggcgtaggccttgaatgccttcatgtcatccgt 149981 Query: 397 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 456 |||||||| || ||||||| |||||||||| ||||| || |||||||| ||||||||||| Sbjct: 149982 gaccttcacgacctcaaccgagcgcttctcgccacgggtgataggcatgtagtcaccctg 150041 Query: 457 gacctgggtggctgtggcaagttcctcangggtagaatcaccagcct 503 ||||||||||||||||||||| |||||| | || || |||||||||| Sbjct: 150042 gacctgggtggctgtggcaagctcctcaggagtcgagtcaccagcct 150088 Score = 85.7 bits (43), Expect = 2e-13 Identities = 106/127 (83%) Strand = Plus / Plus Query: 501 ccttaaccttgcgagcacgccttgggaagataaccagcttagccttgtacgtcttgagtc 560 |||| |||||||| ||||| ||||||||||| || ||||| |||||||| ||||| || | Sbjct: 150168 ccttgaccttgcgggcacgtcttgggaagatgacaagcttggccttgtaggtcttcagcc 150227 Query: 561 tctgaatgttagactgcataccctcaagtgacctgtttttacggcggtgatccacagaaa 620 |||| | || | ||||| ||| |||||||| | ||| ||||||||||||||||| || | Sbjct: 150228 tctggacattggcctgcagaccttcaagtgagcggttcttacggcggtgatccactgaga 150287 Query: 621 tgccaat 627 ||||||| Sbjct: 150288 tgccaat 150294
>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0019F11 Length = 123673 Score = 192 bits (97), Expect = 1e-45 Identities = 194/227 (85%) Strand = Plus / Plus Query: 277 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 336 ||||||||| ||||||||||| |||||||| ||| ||||| |||||||| | || || Sbjct: 47623 tcacttcttctcttccttctcagcctcggccgccctcttctgccgggcaccgatgtggcg 47682 Query: 337 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctnctcagt 396 ||||||||||||||| || | |||||| ||||||||||||| |||||||| | || || Sbjct: 47683 ctggttcatcctctccacgcgcagcttggcgtaggccttgaatgccttcatgtcatccgt 47742 Query: 397 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 456 |||||||| || ||||||| |||||||||| ||||| || |||||||| ||||||||||| Sbjct: 47743 gaccttcacgacctcaaccgagcgcttctcgccacgggtgataggcatgtagtcaccctg 47802 Query: 457 gacctgggtggctgtggcaagttcctcangggtagaatcaccagcct 503 ||||||||||||||||||||| |||||| | || || |||||||||| Sbjct: 47803 gacctgggtggctgtggcaagctcctcaggagtcgagtcaccagcct 47849 Score = 85.7 bits (43), Expect = 2e-13 Identities = 106/127 (83%) Strand = Plus / Plus Query: 501 ccttaaccttgcgagcacgccttgggaagataaccagcttagccttgtacgtcttgagtc 560 |||| |||||||| ||||| ||||||||||| || ||||| |||||||| ||||| || | Sbjct: 47929 ccttgaccttgcgggcacgtcttgggaagatgacaagcttggccttgtaggtcttcagcc 47988 Query: 561 tctgaatgttagactgcataccctcaagtgacctgtttttacggcggtgatccacagaaa 620 |||| | || | ||||| ||| |||||||| | ||| ||||||||||||||||| || | Sbjct: 47989 tctggacattggcctgcagaccttcaagtgagcggttcttacggcggtgatccactgaga 48048 Query: 621 tgccaat 627 ||||||| Sbjct: 48049 tgccaat 48055
>emb|AJ222784.1|HVJ222784 Hordeum vulgare mRNA for ribosomal like-protein, clone RG131 Length = 291 Score = 141 bits (71), Expect = 3e-30 Identities = 189/229 (82%) Strand = Plus / Minus Query: 271 atcttatcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaag 330 |||| |||||||||| || |||||||| |||||||| ||||||||| | ||| || | Sbjct: 232 atctcatcacttcttctcctccttctccgcctcggcagccttcttctgcctggctcccaa 173 Query: 331 ctgccgctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctn 390 ||| |||||||||||||||||||| | ||||||||| |||||||||||| ||||||||| Sbjct: 172 ctggcgctggttcatcctctcgacgcggagcttgccataggccttgaactccttcatctc 113 Query: 391 ctcagtgaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtc 450 ||| || |||||| || || || |||||||||| ||||| | ||| ||||| ||||| Sbjct: 112 ctctgtcaccttcgcgacatccactgagcgcttctctccacgggcaatgggcatgtagtc 53 Query: 451 accctggacctgggtggctgtggcaagttcctcangggtagaatcacca 499 |||||||||||| ||||| ||||||| ||||| | ||||| |||||| Sbjct: 52 accctggacctgtgtggcgttggcaagctcctccggagtagactcacca 4
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 113 bits (57), Expect = 7e-22 Identities = 159/193 (82%), Gaps = 8/193 (4%) Strand = Plus / Plus Query: 319 gcgggcaccaagctgccgctggttcatcctctcgacacagagcttgc----cgtaggcct 374 ||||||||||| || ||||||||||||||||| |||| |||||| ||||||||| Sbjct: 3696256 gcgggcaccaacatggcgctggttcatcctctcaacacggagcttaattagcgtaggcct 3696315 Query: 375 tgaacgccttcatctnctcagtgaccttcatgagctcaaccaagcgcttctcaccacgag 434 ||||||||||||||| || |||||||||| ||||||| ||||||||||||| |||| Sbjct: 3696316 tgaacgccttcatctcatcggtgaccttcacagcctcaaccgagcgcttctcaccgcgag 3696375 Query: 435 taataggcat----atagtcaccctggacctgggtggctgtggcaagttcctcangggta 490 ||||||||| || |||||||||||||||||||| |||||||| ||||| || Sbjct: 3696376 caataggcatgtaattaatcaccctggacctgggtggcagtggcaagctcctcggcagtg 3696435 Query: 491 gaatcaccagcct 503 ||||||||||||| Sbjct: 3696436 gaatcaccagcct 3696448 Score = 40.1 bits (20), Expect = 8.9 Identities = 59/72 (81%) Strand = Plus / Plus Query: 581 ccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagctagc 640 ||||||||||| | ||| || |||||||| ||||| ||||| ||||| || |||| | Sbjct: 3696909 ccctcaagtgagcggttcttgcggcggtggtccacggaaattccaatggtcggagtatac 3696968 Query: 641 ttcttcgggatg 652 |||||||||||| Sbjct: 3696969 ttcttcgggatg 3696980 Score = 40.1 bits (20), Expect = 8.9 Identities = 31/35 (88%) Strand = Plus / Plus Query: 194 ctggtctctatttccagccgnaagacaaaatttag 228 |||||||||||||||||| || ||||||||||| Sbjct: 3696138 ctggtctctatttccagcacaaaaacaaaatttag 3696172
>dbj|AP005847.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ9990_A01 Length = 101684 Score = 113 bits (57), Expect = 7e-22 Identities = 159/193 (82%), Gaps = 8/193 (4%) Strand = Plus / Plus Query: 319 gcgggcaccaagctgccgctggttcatcctctcgacacagagcttgc----cgtaggcct 374 ||||||||||| || ||||||||||||||||| |||| |||||| ||||||||| Sbjct: 19753 gcgggcaccaacatggcgctggttcatcctctcaacacggagcttaattagcgtaggcct 19812 Query: 375 tgaacgccttcatctnctcagtgaccttcatgagctcaaccaagcgcttctcaccacgag 434 ||||||||||||||| || |||||||||| ||||||| ||||||||||||| |||| Sbjct: 19813 tgaacgccttcatctcatcggtgaccttcacagcctcaaccgagcgcttctcaccgcgag 19872 Query: 435 taataggcat----atagtcaccctggacctgggtggctgtggcaagttcctcangggta 490 ||||||||| || |||||||||||||||||||| |||||||| ||||| || Sbjct: 19873 caataggcatgtaattaatcaccctggacctgggtggcagtggcaagctcctcggcagtg 19932 Query: 491 gaatcaccagcct 503 ||||||||||||| Sbjct: 19933 gaatcaccagcct 19945 Score = 40.1 bits (20), Expect = 8.9 Identities = 59/72 (81%) Strand = Plus / Plus Query: 581 ccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagctagc 640 ||||||||||| | ||| || |||||||| ||||| ||||| ||||| || |||| | Sbjct: 20406 ccctcaagtgagcggttcttgcggcggtggtccacggaaattccaatggtcggagtatac 20465 Query: 641 ttcttcgggatg 652 |||||||||||| Sbjct: 20466 ttcttcgggatg 20477 Score = 40.1 bits (20), Expect = 8.9 Identities = 31/35 (88%) Strand = Plus / Plus Query: 194 ctggtctctatttccagccgnaagacaaaatttag 228 |||||||||||||||||| || ||||||||||| Sbjct: 19635 ctggtctctatttccagcacaaaaacaaaatttag 19669
>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0577B11 Length = 180355 Score = 113 bits (57), Expect = 7e-22 Identities = 159/193 (82%), Gaps = 8/193 (4%) Strand = Plus / Plus Query: 319 gcgggcaccaagctgccgctggttcatcctctcgacacagagcttgc----cgtaggcct 374 ||||||||||| || ||||||||||||||||| |||| |||||| ||||||||| Sbjct: 174762 gcgggcaccaacatggcgctggttcatcctctcaacacggagcttaattagcgtaggcct 174821 Query: 375 tgaacgccttcatctnctcagtgaccttcatgagctcaaccaagcgcttctcaccacgag 434 ||||||||||||||| || |||||||||| ||||||| ||||||||||||| |||| Sbjct: 174822 tgaacgccttcatctcatcggtgaccttcacagcctcaaccgagcgcttctcaccgcgag 174881 Query: 435 taataggcat----atagtcaccctggacctgggtggctgtggcaagttcctcangggta 490 ||||||||| || |||||||||||||||||||| |||||||| ||||| || Sbjct: 174882 caataggcatgtaattaatcaccctggacctgggtggcagtggcaagctcctcggcagtg 174941 Query: 491 gaatcaccagcct 503 ||||||||||||| Sbjct: 174942 gaatcaccagcct 174954 Score = 40.1 bits (20), Expect = 8.9 Identities = 59/72 (81%) Strand = Plus / Plus Query: 581 ccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagctagc 640 ||||||||||| | ||| || |||||||| ||||| ||||| ||||| || |||| | Sbjct: 175415 ccctcaagtgagcggttcttgcggcggtggtccacggaaattccaatggtcggagtatac 175474 Query: 641 ttcttcgggatg 652 |||||||||||| Sbjct: 175475 ttcttcgggatg 175486 Score = 40.1 bits (20), Expect = 8.9 Identities = 31/35 (88%) Strand = Plus / Plus Query: 194 ctggtctctatttccagccgnaagacaaaatttag 228 |||||||||||||||||| || ||||||||||| Sbjct: 174644 ctggtctctatttccagcacaaaaacaaaatttag 174678
>gb|DQ200371.1| Solanum tuberosum clone 057F09 unknown mRNA Length = 820 Score = 109 bits (55), Expect = 1e-20 Identities = 99/114 (86%) Strand = Plus / Minus Query: 451 accctggacctgggtggctgtggcaagttcctcangggtagaatcaccagccttaacctt 510 |||||||||||||||||| || ||||||||||| |||||||||||||||| ||||| Sbjct: 453 accctggacctgggtggcagtagcaagttcctctgcactagaatcaccagccttgacctt 394 Query: 511 gcgagcacgccttgggaagataaccagcttagccttgtacgtcttgagtctctg 564 ||||||||||||||||||||| |||||||||||||| ||||| || ||||| Sbjct: 393 cttagcacgccttgggaagataactagcttagccttgtaggtcttaagcctctg 340
>gb|AY395689.1| Solanum brevidens 60S ribosomal protein L13 (Ci-1) mRNA, partial cds Length = 635 Score = 109 bits (55), Expect = 1e-20 Identities = 99/114 (86%) Strand = Plus / Minus Query: 451 accctggacctgggtggctgtggcaagttcctcangggtagaatcaccagccttaacctt 510 |||||||||||||||||| || ||||||||||| |||||||||||||||| ||||| Sbjct: 484 accctggacctgggtggcagtagcaagttcctctgcactagaatcaccagccttgacctt 425 Query: 511 gcgagcacgccttgggaagataaccagcttagccttgtacgtcttgagtctctg 564 |||||||||||||||||||| |||||||||||||| |||||||| ||||| Sbjct: 424 cttggcacgccttgggaagataacaagcttagccttgtaggtcttgagcctctg 371
>ref|NM_189111.1| Oryza sativa (japonica cultivar-group), mRNA Length = 936 Score = 101 bits (51), Expect = 3e-18 Identities = 119/142 (83%), Gaps = 4/142 (2%) Strand = Plus / Minus Query: 366 cgtaggccttgaacgccttcatctnctcagtgaccttcatgagctcaaccaagcgcttct 425 |||||||||||||||||||||||| || |||||||||| ||||||| ||||||||| Sbjct: 928 cgtaggccttgaacgccttcatctcatcggtgaccttcacagcctcaaccgagcgcttct 869 Query: 426 caccacgagtaataggcat----atagtcaccctggacctgggtggctgtggcaagttcc 481 |||| |||| ||||||||| || |||||||||||||||||||| |||||||| ||| Sbjct: 868 caccgcgagcaataggcatgtaattaatcaccctggacctgggtggcagtggcaagctcc 809 Query: 482 tcangggtagaatcaccagcct 503 || || ||||||||||||| Sbjct: 808 tcggcagtggaatcaccagcct 787
>gb|BT014105.1| Lycopersicon esculentum clone 133209F, mRNA sequence Length = 811 Score = 101 bits (51), Expect = 3e-18 Identities = 95/110 (86%) Strand = Plus / Minus Query: 455 tggacctgggtggctgtggcaagttcctcangggtagaatcaccagccttaaccttgcga 514 |||||||||||||| || ||||||||||| |||||||||||||||| ||||| | Sbjct: 486 tggacctgggtggcagtagcaagttcctctgcactagaatcaccagccttgaccttctta 427 Query: 515 gcacgccttgggaagataaccagcttagccttgtacgtcttgagtctctg 564 |||||||||||||||||||| |||||||||||||| ||||| || ||||| Sbjct: 426 gcacgccttgggaagataactagcttagccttgtaggtcttaagcctctg 377
>gb|AY479981.1| Capsicum annuum induced protein BnC24B mRNA, partial sequence Length = 622 Score = 97.6 bits (49), Expect = 4e-17 Identities = 111/132 (84%) Strand = Plus / Minus Query: 433 agtaataggcatatagtcaccctggacctgggtggctgtggcaagttcctcangggtaga 492 ||||||||||| ||| |||||||||||||||||| || ||||| ||||| |||| Sbjct: 509 agtaataggcagatatggaccctggacctgggtggcagtagcaagctcctctgcactaga 450 Query: 493 atcaccagccttaaccttgcgagcacgccttgggaagataaccagcttagccttgtacgt 552 |||||||||||| || || |||||||||||||||||| || |||||||||||||| || Sbjct: 449 atcaccagccttgactttcttagcacgccttgggaagatgacaagcttagccttgtaagt 390 Query: 553 cttgagtctctg 564 |||||| ||||| Sbjct: 389 cttgagcctctg 378
>gb|BT012753.1| Lycopersicon esculentum clone 113692F, mRNA sequence Length = 962 Score = 93.7 bits (47), Expect = 7e-16 Identities = 151/186 (81%) Strand = Plus / Minus Query: 451 accctggacctgggtggctgtggcaagttcctcangggtagaatcaccagccttaacctt 510 ||||||||| |||||||| | |||||||||||| |||||||||||||||| || || Sbjct: 495 accctggacttgggtggcattagcaagttcctcagcactagaatcaccagccttgacttt 436 Query: 511 gcgagcacgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgtt 570 |||| |||||||||||||||| |||||||| ||||| |||||| ||||||| | ||| Sbjct: 435 cttagcatgccttgggaagataacgagcttagctttgtatgtcttgggtctctggacgtt 376 Query: 571 agactgcataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagt 630 | ||| | ||| ||||| || ||||| | || | ||||||||||| |||||| ||||| Sbjct: 375 ggtctggagaccttcaagggatctgttcctgcgcctgtgatccacagcaatgccgatagt 316 Query: 631 aggagc 636 ||||| Sbjct: 315 tggagc 310
>emb|AJ132537.1|PAB132537 Picea abies mRNA for 60S ribosomal protein L13E Length = 932 Score = 60.0 bits (30), Expect = 1e-05 Identities = 66/78 (84%) Strand = Plus / Minus Query: 489 tagaatcaccagccttaaccttgcgagcacgccttgggaagataaccagcttagccttgt 548 |||||||||||||||| | |||||||||| |||||||||| ||||| ||| || |||| Sbjct: 480 tagaatcaccagcctttagcttgcgagcagttcttgggaagacaaccaacttcgctttgt 421 Query: 549 acgtcttgagtctctgaa 566 | || || |||||||||| Sbjct: 420 atgttttcagtctctgaa 403
>emb|Z22618.1|BNC24AGNA B.napus cold induced protein (BnC24A) mRNA Length = 792 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 488 gtagaatcaccagccttaaccttgcgagcacgccttgggaagataaccagcttagccttg 547 ||||||||||||||||| ||||| | ||||| | |||||||| |||| |||||||||| Sbjct: 444 gtagaatcaccagccttgaccttcctggcacgacgcgggaagatgaccaacttagccttg 385 Query: 548 tacgtcttgagtctctg 564 || || ||||| ||||| Sbjct: 384 taggttttgagcctctg 368
>gb|AF457937.1| Zea mays clone cho1c.pk002.p17, mRNA sequence Length = 527 Score = 54.0 bits (27), Expect = 6e-04 Identities = 43/48 (89%), Gaps = 1/48 (2%) Strand = Plus / Minus Query: 495 caccagccttaaccttgcgagcacgcc-ttgggaagataaccagctta 541 ||||||| || |||||| ||||||||| ||||||||||| |||||||| Sbjct: 487 caccagcnttgaccttgngagcacgccattgggaagatanccagctta 440
>emb|Z22620.1|BNC24AGNC B.napus cold induced protein (BnC24B) Length = 805 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 488 gtagaatcaccagccttaaccttgcgagcacgccttgggaagataaccagcttagccttg 547 ||||||||||||||||| ||||| | ||||| | |||||||| |||| |||||||||| Sbjct: 459 gtagaatcaccagccttgaccttcctggcacgacgcgggaagatgaccaacttagccttg 400 Query: 548 ta 549 || Sbjct: 399 ta 398
>emb|Z22619.1|BNC24AGNB B.napus cold induced protein (BnC24B) Length = 507 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 488 gtagaatcaccagccttaaccttgcgagcacgccttgggaagataaccagcttagccttg 547 ||||||||||||||||| ||||| | ||||| | |||||||| |||| |||||||||| Sbjct: 65 gtagaatcaccagccttgaccttcctggcacgacgcgggaagatgaccaacttagccttg 6 Query: 548 ta 549 || Sbjct: 5 ta 4
>gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hospital Oakland Research Institute) complete sequence Length = 228052 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 148 tgaacagcataccatgcaaacaagtac 174 |||||| |||||||||||||||||||| Sbjct: 194726 tgaacaacataccatgcaaacaagtac 194752
>ref|NM_114755.1| Arabidopsis thaliana structural constituent of ribosome AT3G48960 mRNA, complete cds Length = 621 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 524 gggaagataaccagcttagccttgta 549 ||||||||||||| |||||||||||| Sbjct: 377 gggaagataaccaacttagccttgta 352
>gb|AC013351.7| Drosophila melanogaster clone BACR06H06, complete sequence Length = 186935 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 260 tgaaacaaaatatcttatcact 281 |||||||||||||||||||||| Sbjct: 127993 tgaaacaaaatatcttatcact 128014
>gb|AC018484.5| Drosophila melanogaster clone BACR13A13, complete sequence Length = 172746 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 260 tgaaacaaaatatcttatcact 281 |||||||||||||||||||||| Sbjct: 54139 tgaaacaaaatatcttatcact 54160
>emb|AL132967.1|ATT2J13 Arabidopsis thaliana DNA chromosome 3, BAC clone T2J13 Length = 85109 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 524 gggaagataaccagcttagccttgta 549 ||||||||||||| |||||||||||| Sbjct: 68643 gggaagataaccaacttagccttgta 68618
>gb|AC110489.7| Homo sapiens 3 BAC RP11-324N13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 19236 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 277 tcacttcttttcttccttctct 298 |||||||||||||||||||||| Sbjct: 13499 tcacttcttttcttccttctct 13520
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 363 tgccgtaggccttgaacgccttcatc 388 |||||| ||||||||||||||||||| Sbjct: 5691966 tgccgtcggccttgaacgccttcatc 5691941
>gb|AE003782.4| Drosophila melanogaster chromosome 2L, section 81 of 83 of the complete sequence Length = 298116 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 260 tgaaacaaaatatcttatcact 281 |||||||||||||||||||||| Sbjct: 272847 tgaaacaaaatatcttatcact 272868
>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold Length = 1952403 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 283 cttttcttccttctctgcctc 303 ||||||||||||||||||||| Sbjct: 1874742 cttttcttccttctctgcctc 1874722
>gb|AY743426.1| Metridium senile NaK-ATPase alpha subunit isoform 1 mRNA, partial cds Length = 605 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 caaacaagtaccacgtatcaa 184 ||||||||||||||||||||| Sbjct: 277 caaacaagtaccacgtatcaa 297
>gb|AY389645.1| Hyacinthus orientalis cold-induced protein mRNA, partial cds Length = 558 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 518 cgccttgggaagataaccagcttagccttgtac 550 ||||||||||| ||||| ||||| ||||||||| Sbjct: 357 cgccttgggaaaataacaagcttggccttgtac 325
>ref|XM_960094.1| Neurospora crassa OR74A hypothetical protein (NCU08056.1) partial mRNA Length = 4839 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 277 tcacttcttttcttccttctc 297 ||||||||||||||||||||| Sbjct: 4839 tcacttcttttcttccttctc 4819
>ref|XM_328761.1| Neurospora crassa OR74A hypothetical protein (NCU08056.1) partial mRNA Length = 4839 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 277 tcacttcttttcttccttctc 297 ||||||||||||||||||||| Sbjct: 4839 tcacttcttttcttccttctc 4819
>emb|AL391841.17| Human DNA sequence from clone RP11-123G14 on chromosome 13 Contains part of a novel gene (FLJ22153) and a CpG island, complete sequence Length = 99441 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 278 cacttcttttcttccttctctgcct 302 ||||||||||||||| ||||||||| Sbjct: 53023 cacttcttttcttccctctctgcct 52999
>emb|AL356117.16| Human DNA sequence from clone RP11-258G21 on chromosome 6 Contains part of the BAI3 gene for brain-specific angiogenesis inhibitor 3, complete sequence Length = 127079 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 tatcttatcacttcttttctt 290 ||||||||||||||||||||| Sbjct: 62543 tatcttatcacttcttttctt 62563
>gb|AC146674.3| Callithrix jacchus clone CH259-338M13, complete sequence Length = 228448 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 283 cttttcttccttctctgcctc 303 ||||||||||||||||||||| Sbjct: 150787 cttttcttccttctctgcctc 150767
>gb|AC084242.4|AC084242 Arabidopsis thaliana chromosome 1 BAC T24P22 genomic sequence, complete sequence Length = 18062 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 275 tatcacttcttttcttccttctctg 299 ||||||||| ||||||||||||||| Sbjct: 4843 tatcacttcatttcttccttctctg 4867
>gb|AC084414.2|AC084414 Arabidopsis thaliana chromosome 1 BAC F27K7 genomic sequence, complete sequence Length = 54313 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 275 tatcacttcttttcttccttctctg 299 ||||||||| ||||||||||||||| Sbjct: 49125 tatcacttcatttcttccttctctg 49149
>ref|NM_114760.3| Arabidopsis thaliana ATBBC1; structural constituent of ribosome AT3G49010 (ATBBC1) transcript variant AT3G49010.1 mRNA, complete cds Length = 873 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 488 gtagaatcaccagccttaaccttgcgagcacg 519 ||||| ||||||||||| |||||||| ||||| Sbjct: 481 gtagagtcaccagccttgaccttgcgggcacg 450
>ref|NM_180341.1| Arabidopsis thaliana ATBBC1; structural constituent of ribosome AT3G49010 (ATBBC1) transcript variant AT3G49010.2 mRNA, complete cds Length = 859 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 488 gtagaatcaccagccttaaccttgcgagcacg 519 ||||| ||||||||||| |||||||| ||||| Sbjct: 467 gtagagtcaccagccttgaccttgcgggcacg 436
>ref|NM_001035754.1| Arabidopsis thaliana ATBBC1; structural constituent of ribosome AT3G49010 (ATBBC1) transcript variant AT3G49010.3 mRNA, complete cds Length = 906 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 488 gtagaatcaccagccttaaccttgcgagcacg 519 ||||| ||||||||||| |||||||| ||||| Sbjct: 496 gtagagtcaccagccttgaccttgcgggcacg 465
>ref|XM_515164.1| PREDICTED: Pan troglodytes similar to sterol regulatory element-binding transcription factor 2; sterol regulatory element-binding protein 2 (LOC458872), mRNA Length = 2372 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 288 cttccttctctgcctcggcggcct 311 ||||||||||| |||||||||||| Sbjct: 301 cttccttctctccctcggcggcct 324
>gb|AC154520.3| Mus musculus BAC clone RP23-471P16 from chromosome 14, complete sequence Length = 199186 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 452 ccctggacctgggtggctgtggca 475 ||||| |||||||||||||||||| Sbjct: 114629 ccctgcacctgggtggctgtggca 114606
>ref|NM_173065.1| Homo sapiens interleukin 28 receptor, alpha (interferon, lambda receptor) (IL28RA), transcript variant 3, mRNA Length = 4418 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 tcttccttctctgcctcggc 306 |||||||||||||||||||| Sbjct: 2104 tcttccttctctgcctcggc 2123
>ref|NM_173064.1| Homo sapiens interleukin 28 receptor, alpha (interferon, lambda receptor) (IL28RA), transcript variant 2, mRNA Length = 4462 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 tcttccttctctgcctcggc 306 |||||||||||||||||||| Sbjct: 2148 tcttccttctctgcctcggc 2167
>ref|NM_170743.2| Homo sapiens interleukin 28 receptor, alpha (interferon, lambda receptor) (IL28RA), transcript variant 1, mRNA Length = 4549 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 tcttccttctctgcctcggc 306 |||||||||||||||||||| Sbjct: 2235 tcttccttctctgcctcggc 2254
>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence Length = 1653225 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 280 cttcttttcttccttctctgcctc 303 |||||||||||||| ||||||||| Sbjct: 448320 cttcttttcttcctcctctgcctc 448343
>gb|AC105379.11| Trypanosoma brucei chromosome 3 clone RPCI93-30P12, complete sequence Length = 165197 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 280 cttcttttcttccttctctgcctc 303 |||||||||||||| ||||||||| Sbjct: 42366 cttcttttcttcctcctctgcctc 42389
>gb|AC108835.8| Mus musculus chromosome 6, clone RP23-274E24, complete sequence Length = 173365 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 gcctggtctctatttccagc 211 |||||||||||||||||||| Sbjct: 36916 gcctggtctctatttccagc 36935
>gb|BC056158.1| Homo sapiens sterol regulatory element binding transcription factor 2, mRNA (cDNA clone MGC:65097 IMAGE:6169568), complete cds Length = 4290 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 288 cttccttctctgcctcggcggcct 311 ||||||||||| |||||||||||| Sbjct: 431 cttccttctctccctcggcggcct 454
>gb|AC117586.10| Mus musculus chromosome 3, clone RP23-166M8, complete sequence Length = 215166 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 cttcttttcttccttctctg 299 |||||||||||||||||||| Sbjct: 30587 cttcttttcttccttctctg 30568
>gb|AC138401.9| Mus musculus chromosome 13, clone RP24-79G5, complete sequence Length = 209942 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 ctcagtgaccttcatgagct 410 |||||||||||||||||||| Sbjct: 59629 ctcagtgaccttcatgagct 59648
>gb|AY498874.1| Streptomyces lavendulae linear plasmid pSLV45 SLV.1 (SLV.1), SLV.1B (SLV.1B), SLV.2 (SLV.2), SLV.3 (SLV.3), SLV.4 (SLV.4), SLV.5 (SLV.5), SLV.6 (SLV.6), SLV.7, SLV.8, SLV.9 (SLV.9), SLV.10 (SLV.10), SLV.11 (SLV.11), SLV.12 (SLV.12), SLV.13 (SLV.13), SLV.14 (SLV.14), SLV.15 (SLV.15), SLV.16 (SLV.16), SLV.17 (SLV.17), SLV.18 (SLV.18), RegA (regA), TraSLVA (traSLVA), SLV.21 (SLV.21), ParSLV (parSLV), SLV.23 (SLV.23), SLV.24 (SLV.24), TpgSLV (tpgSLV), SLV.26 (SLV.26), SLV.27 (SLV.27), TraSLVB (traSLVB), SLV.29 (SLV.29), SLV.30 (SLV.30), TraSLR, SLV.32 (SLV.32), SLV.33 (SLV.33), SLV.34 (SLV.34), SLV.35 (SLV.35), SLV.36 (SLV.36), and SLV.37 (SLV.37) genes, complete cds Length = 41987 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 tccttctctgcctcggcggc 309 |||||||||||||||||||| Sbjct: 36942 tccttctctgcctcggcggc 36923
>gb|AC115738.9| Mus musculus chromosome 3, clone RP23-474P24, complete sequence Length = 188507 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 cttcttttcttccttctctg 299 |||||||||||||||||||| Sbjct: 22319 cttcttttcttccttctctg 22338
>gb|AY456009.1| Cochliobolus heterostrophus putative histidine kinase HHK6p (HHK6) gene, complete cds Length = 4570 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 ccttcatgagctcaaccaag 418 |||||||||||||||||||| Sbjct: 3081 ccttcatgagctcaaccaag 3062
>gb|BC051385.1| Homo sapiens sterol regulatory element binding transcription factor 2, mRNA (cDNA clone IMAGE:5497929), containing frame-shift errors Length = 5706 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 288 cttccttctctgcctcggcggcct 311 ||||||||||| |||||||||||| Sbjct: 400 cttccttctctccctcggcggcct 423
>gb|AF439325.1| Homo sapiens putative class II cytokine receptor CRF2/12 (CRF2/12) mRNA, complete cds Length = 4536 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 tcttccttctctgcctcggc 306 |||||||||||||||||||| Sbjct: 2222 tcttccttctctgcctcggc 2241
>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome Length = 3059876 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 gatatcattcactagcatga 262 |||||||||||||||||||| Sbjct: 890688 gatatcattcactagcatga 890707
>emb|Z99716.4|HS250D10 Human DNA sequence from clone CTA-250D10 on chromosome 22 Contains the genes for SREBF2 (sterol regulatory element binding transcription factor 2), NAGA (alpha-N-acetylgalactosaminidase), a gene similar to neuronal-specific septin 3, a pseudogene similar to ANT2 (adenine nucleotide translocator 2), 2 mRNAs based on ESTs, a genomic marker D22S1178, a CA repeat polymorpism, ESTs and a CpG island, complete sequence Length = 220895 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 288 cttccttctctgcctcggcggcct 311 ||||||||||| |||||||||||| Sbjct: 10275 cttccttctctccctcggcggcct 10298
>emb|AL731556.11| Human DNA sequence from clone RP11-428P16 on chromosome 10 Contains the 5' end of the KCNMA1 gene for potassium large conductance calcium-activated channel subfamily M alpha member 1, a novel zinc finger pseudogene (KIAA1629) and two CpG islands, complete sequence Length = 203003 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 acttcttttcttccttctct 298 |||||||||||||||||||| Sbjct: 92160 acttcttttcttccttctct 92141
>emb|AL590683.16| Human DNA sequence from clone RP11-10N16 on chromosome 1 Contains the 5' end of the IL22RA1 gene for interleukin 22 receptor alpha 1, the IL28RA gene for interleukin 28 receptor alpha (interferon, lambda receptor), a novel gene and the 3' end of a novel gene, complete sequence Length = 164684 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 tcttccttctctgcctcggc 306 |||||||||||||||||||| Sbjct: 21070 tcttccttctctgcctcggc 21051
>emb|AL353730.13| Human DNA sequence from clone RP11-55P9 on chromosome 9, complete sequence Length = 147810 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 cttcttttcttccttctctg 299 |||||||||||||||||||| Sbjct: 72436 cttcttttcttccttctctg 72455
>emb|AL157703.14| Human DNA sequence from clone RP11-79K3 on chromosome 9p23-24.3, complete sequence Length = 90278 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 aagacaaaatttaggacaag 234 |||||||||||||||||||| Sbjct: 56549 aagacaaaatttaggacaag 56568
>gb|AC010184.18| Homo sapiens 3 BAC RP11-438D8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 190580 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ttcttttcttccttctctgc 300 |||||||||||||||||||| Sbjct: 173415 ttcttttcttccttctctgc 173434
>gb|AY079381.1| Arabidopsis thaliana putative 60S ribosomal protein L13, BBC1 protein (At3g49010) mRNA, complete cds Length = 652 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 488 gtagaatcaccagccttaaccttgcgagcacg 519 ||||| ||||||||||| |||||||| ||||| Sbjct: 413 gtagagtcaccagccttgaccttgcgggcacg 382
>gb|AY050854.1| Arabidopsis thaliana putative 60S ribosomal protein L13, BBC1 protein (At3g49010) mRNA, complete cds Length = 844 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 488 gtagaatcaccagccttaaccttgcgagcacg 519 ||||| ||||||||||| |||||||| ||||| Sbjct: 461 gtagagtcaccagccttgaccttgcgggcacg 430
>emb|AL596110.15| Mouse DNA sequence from clone RP23-330N10 on chromosome 11 Contains the 3' end of a variant of the gene for a novel protein similar to human sperm antigen HCMOGT-1 (B230396K10Rik), the Adora2b gene for adenosine A2b receptor, the gene for a novel protein (2410012H22Rik), a somatic cytochrome c (Cycs) pseudogene, a novel gene, a novel pseudogene, the gene for a novel protein (2810460C24Rik), the 3' end of the Ncor1 gene for nuclear receptor co-repressor 1 and two CpG islands, complete sequence Length = 214834 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 127 ggtagaaatccatcgactcactga 150 ||||||||||||| |||||||||| Sbjct: 146112 ggtagaaatccatagactcactga 146089
>emb|AL672260.25| Mouse DNA sequence from clone DN-127L1 on chromosome 3 Contains a Saccharomyces cerevisiae Nip7p homolog (pEachy) homolog pseudogene, a tumor protein translationally-controlled 1 (Tpt1) pseudogene, a high mobility group box 2 (Hmgb2) pseudogene and the Cd2 gene for CD2 antigen, complete sequence Length = 169010 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 559 tctctgaatgttagactgca 578 |||||||||||||||||||| Sbjct: 119500 tctctgaatgttagactgca 119481
>gb|BC066703.1| Danio rerio zgc:77049, mRNA (cDNA clone MGC:77049 IMAGE:6959871), complete cds Length = 3100 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 acttcttttcttccttctct 298 |||||||||||||||||||| Sbjct: 2610 acttcttttcttccttctct 2629
>ref|NM_212874.1| Danio rerio zgc:77049 (zgc:77049), mRNA Length = 3100 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 acttcttttcttccttctct 298 |||||||||||||||||||| Sbjct: 2610 acttcttttcttccttctct 2629
>emb|CR590934.1| full-length cDNA clone CS0DJ001YF16 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 1804 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 288 cttccttctctgcctcggcggcct 311 ||||||||||| |||||||||||| Sbjct: 443 cttccttctctccctcggcggcct 466
>gb|AF500581.1| Aspicarpa brevipes phytochrome C (PHYC) gene, partial cds Length = 1177 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 gagcacgccttgggaagata 532 |||||||||||||||||||| Sbjct: 1140 gagcacgccttgggaagata 1159
>gb|AF500540.1| Gaudichaudia mcvaughii phytochrome C (PHYC) gene, partial cds Length = 1177 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 gagcacgccttgggaagata 532 |||||||||||||||||||| Sbjct: 1140 gagcacgccttgggaagata 1159
>gb|AF436795.1| Mascagnia dipholiphylla phytochrome C (PHYC) gene, partial cds Length = 1177 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 gagcacgccttgggaagata 532 |||||||||||||||||||| Sbjct: 1140 gagcacgccttgggaagata 1159
>gb|AC007143.5| Arabidopsis thaliana chromosome 2 BAC T17H1 genomic sequence, complete sequence Length = 75812 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 621 tgccaatagtaggagctagc 640 |||||||||||||||||||| Sbjct: 60142 tgccaatagtaggagctagc 60123
>gb|AY081595.1| Arabidopsis thaliana 60S ribosomal protein L13, BBC1 protein (At3g49010) mRNA, complete cds Length = 747 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 488 gtagaatcaccagccttaaccttgcgagcacg 519 ||||| ||||||||||| |||||||| ||||| Sbjct: 413 gtagagtcaccagccttgaccttgcgggcacg 382
>gb|AC105361.2| Homo sapiens chromosome , clone RP11-170D6, complete sequence Length = 160074 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 gagtaataggcatatagtca 451 |||||||||||||||||||| Sbjct: 50212 gagtaataggcatatagtca 50193
>gb|AC087714.6| Homo sapiens chromosome 17, clone RP11-167A1, complete sequence Length = 163377 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 gagtaataggcatatagtca 451 |||||||||||||||||||| Sbjct: 46492 gagtaataggcatatagtca 46511
>gb|AY065137.1| Arabidopsis thaliana 60S ribosomal protein L13, BBC1 protein (At3g49010; T2J13.150) mRNA, complete cds Length = 859 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 488 gtagaatcaccagccttaaccttgcgagcacg 519 ||||| ||||||||||| |||||||| ||||| Sbjct: 467 gtagagtcaccagccttgaccttgcgggcacg 436
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 tcaccctggacctgggtggc 468 |||||||||||||||||||| Sbjct: 992835 tcaccctggacctgggtggc 992854
>gb|AF428384.1|AF428384 Arabidopsis thaliana AT3g49010/T2J13_150 mRNA, complete cds Length = 821 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 488 gtagaatcaccagccttaaccttgcgagcacg 519 ||||| ||||||||||| |||||||| ||||| Sbjct: 457 gtagagtcaccagccttgaccttgcgggcacg 426
>gb|S45406.1| TobRB7=root-specific gene regulator [Nicotiana tabacum=tobacco, cv Wisconsin 38, Genomic, 3426 nt] Length = 3426 Score = 40.1 bits (20), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 85 aaatcgangaagaaacaagtcat 107 ||||||| ||||||||||||||| Sbjct: 105 aaatcgaggaagaaacaagtcat 83
>gb|BC051799.1| Homo sapiens sterol regulatory element binding transcription factor 2, mRNA (cDNA clone IMAGE:5498684), partial cds Length = 5251 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 288 cttccttctctgcctcggcggcct 311 ||||||||||| |||||||||||| Sbjct: 451 cttccttctctccctcggcggcct 474
>ref|NM_004599.2| Homo sapiens sterol regulatory element binding transcription factor 2 (SREBF2), mRNA Length = 4325 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 288 cttccttctctgcctcggcggcct 311 ||||||||||| |||||||||||| Sbjct: 462 cttccttctctccctcggcggcct 485
>gb|AC154180.2| Mus musculus BAC clone RP24-469E6 from chromosome 14, complete sequence Length = 187810 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ttcttttcttccttctctgc 300 |||||||||||||||||||| Sbjct: 10293 ttcttttcttccttctctgc 10312
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 616 agaaatgccaatagtaggag 635 |||||||||||||||||||| Sbjct: 13558552 agaaatgccaatagtaggag 13558571
>gb|AC069014.21|AC069014 Mus musculus 11 BAC RP23-278K23 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 181557 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 280 cttcttttcttccttctctgcctc 303 ||||||| |||||||||||||||| Sbjct: 17258 cttctttccttccttctctgcctc 17235
>emb|BX824106.1|CNS0A6YY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH22ZE02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 789 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 488 gtagaatcaccagccttaaccttgcgagcacg 519 ||||| ||||||||||| |||||||| ||||| Sbjct: 427 gtagagtcaccagccttgaccttgcgggcacg 396
>emb|BX823582.1|CNS0A6KK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS53ZB12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 823 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 488 gtagaatcaccagccttaaccttgcgagcacg 519 ||||| ||||||||||| |||||||| ||||| Sbjct: 450 gtagagtcaccagccttgaccttgcgggcacg 419
>gb|AC073918.13|AC073918 Mus musculus 11 BAC RP23-362J7 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 195667 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 280 cttcttttcttccttctctgcctc 303 ||||||| |||||||||||||||| Sbjct: 8417 cttctttccttccttctctgcctc 8440
>gb|AY084928.1| Arabidopsis thaliana clone 12182 mRNA, complete sequence Length = 845 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 488 gtagaatcaccagccttaaccttgcgagcacg 519 ||||| ||||||||||| |||||||| ||||| Sbjct: 481 gtagagtcaccagccttgaccttgcgggcacg 450
>dbj|AK160364.1| Homo sapiens mRNA for FLJ00190 protein Length = 4519 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 tcttccttctctgcctcggc 306 |||||||||||||||||||| Sbjct: 2225 tcttccttctctgcctcggc 2244
>gb|AC007955.4|AC007955 Homo sapiens chromosome 14 clone CTD-3014H8 and RP11-285P21 map 14q24.3, complete sequence Length = 163312 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 ttagactgcataccctcaag 588 |||||||||||||||||||| Sbjct: 81443 ttagactgcataccctcaag 81424
>emb|X75162.1|ATRNABBC1 A.thaliana gene for BBC1 protein Length = 751 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 488 gtagaatcaccagccttaaccttgcgagcacg 519 ||||| ||||||||||| |||||||| ||||| Sbjct: 436 gtagagtcaccagccttgaccttgcgggcacg 405
>gb|AY530952.1| Zea mays unknown (Z576C20.2), putative heme oxygenase 1 (Z576C20.3), anthocyanin biosynthesis regulatory protein Pl1_B73 (Z576C20.4), putative growth-regulating factor 1 (Z576C20.6), and putative aminoalcoholphosphotransferase (Z576C20.14) genes, complete cds; and putative receptor protein kinase (Z576C20.21) gene, partial cds Length = 155173 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 atcacttcttttcttccttc 295 |||||||||||||||||||| Sbjct: 89941 atcacttcttttcttccttc 89960
>gb|AC154366.2| Mus musculus BAC clone RP24-567I24 from 17, complete sequence Length = 147597 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 611 tccacagaaatgccaatagt 630 |||||||||||||||||||| Sbjct: 36120 tccacagaaatgccaatagt 36101
>emb|Y08501.2|MIATGENA Arabidopsis thaliana mitochondrial genome Length = 366924 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 621 tgccaatagtaggagctagc 640 |||||||||||||||||||| Sbjct: 216042 tgccaatagtaggagctagc 216061
>emb|CT841522.1| Homo sapiens SREBF2 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.SREBF2.V2) Length = 3606 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 288 cttccttctctgcctcggcggcct 311 ||||||||||| |||||||||||| Sbjct: 375 cttccttctctccctcggcggcct 398
>emb|AL049832.3|CNS0000G Human chromosome 14 DNA sequence BAC R-63D17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 177172 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 569 ttagactgcataccctcaag 588 |||||||||||||||||||| Sbjct: 35430 ttagactgcataccctcaag 35449
>dbj|AP002759.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-686G23, complete sequences Length = 177933 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 cacttcttttcttccttctc 297 |||||||||||||||||||| Sbjct: 149849 cacttcttttcttccttctc 149830
>emb|AL662999.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0018A10, complete sequence Length = 133238 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 616 agaaatgccaatagtaggag 635 |||||||||||||||||||| Sbjct: 85015 agaaatgccaatagtaggag 85034
>emb|AL591466.8| Mouse DNA sequence from clone RP23-279L23 on chromosome 11, complete sequence Length = 239847 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 280 cttcttttcttccttctctgcctc 303 ||||||| |||||||||||||||| Sbjct: 42732 cttctttccttccttctctgcctc 42755
>emb|AL645930.15| Mouse DNA sequence from clone RP23-434L7 on chromosome 3, complete sequence Length = 227993 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 559 tctctgaatgttagactgca 578 |||||||||||||||||||| Sbjct: 209002 tctctgaatgttagactgca 208983
>gb|U02031.1|HSU02031 Human sterol regulatory element binding protein-2 mRNA, complete cds Length = 4249 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 288 cttccttctctgcctcggcggcct 311 ||||||||||| |||||||||||| Sbjct: 410 cttccttctctccctcggcggcct 433 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,120,095 Number of Sequences: 3902068 Number of extensions: 5120095 Number of successful extensions: 126863 Number of sequences better than 10.0: 117 Number of HSP's better than 10.0 without gapping: 117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 126336 Number of HSP's gapped (non-prelim): 495 length of query: 655 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 632 effective length of database: 17,143,297,704 effective search space: 10834564148928 effective search space used: 10834564148928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
