Clone Name | rbah61i04 |
---|---|
Clone Library Name | barley_pub |
>THI42_MAIZE (Q41739) Thiazole biosynthetic enzyme 1-2, chloroplast precursor| Length = 354 Score = 188 bits (478), Expect = 9e-48 Identities = 95/116 (81%), Positives = 105/116 (90%) Frame = -3 Query: 595 FGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM 416 FGATGVKRLQDIGMI AVPGMKALDMN AED IVRLTREVVPGMIVTGMEVAEIDGAPRM Sbjct: 240 FGATGVKRLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRM 299 Query: 415 GPTFGAMMISGQKAAHLALKALGRPNGIDGTLKNVTPALHPEMILAATNNADIVDA 248 GPTFGAMMISGQKAAHLALKALGRPN +DGT+ V+PAL E ++A+ ++ ++VDA Sbjct: 300 GPTFGAMMISGQKAAHLALKALGRPNAVDGTIPEVSPALREEFVIASKDD-EVVDA 354
>THI4_CITSI (O23787) Thiazole biosynthetic enzyme, chloroplast precursor| Length = 356 Score = 181 bits (459), Expect = 1e-45 Identities = 92/116 (79%), Positives = 103/116 (88%) Frame = -3 Query: 595 FGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM 416 FGATGVKRL+ IGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM Sbjct: 244 FGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM 303 Query: 415 GPTFGAMMISGQKAAHLALKALGRPNGIDGTLKNVTPALHPEMILAATNNADIVDA 248 GPTFGAMMISGQKAAHLALK+LG+PN +DGT +HPE+ILAA ++A+ DA Sbjct: 304 GPTFGAMMISGQKAAHLALKSLGQPNALDGT---YVGGVHPELILAAADSAETADA 356
>THI41_MAIZE (Q41738) Thiazole biosynthetic enzyme 1-1, chloroplast precursor| Length = 354 Score = 181 bits (458), Expect = 2e-45 Identities = 94/116 (81%), Positives = 104/116 (89%) Frame = -3 Query: 595 FGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM 416 FGATGVKRLQDIGMI AVPGMKALDMNTAED IVRLTREVVPGMIVTGMEVAEIDGAPRM Sbjct: 243 FGATGVKRLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRM 302 Query: 415 GPTFGAMMISGQKAAHLALKALGRPNGIDGTLKNVTPALHPEMILAATNNADIVDA 248 GPTFGAMMISGQKAAHLALKALGRPN +DGT+ +P L E+++A ++ ++VDA Sbjct: 303 GPTFGAMMISGQKAAHLALKALGRPNAVDGTM---SPPLREELMIAYKDD-EVVDA 354
>THI4_ALNGL (Q38709) Thiazole biosynthetic enzyme, chloroplast precursor (AG6)| Length = 352 Score = 178 bits (452), Expect = 9e-45 Identities = 91/116 (78%), Positives = 100/116 (86%) Frame = -3 Query: 595 FGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM 416 FGATGVK L+ IGMI VPGMKALDMN AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRM Sbjct: 240 FGATGVKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRM 299 Query: 415 GPTFGAMMISGQKAAHLALKALGRPNGIDGTLKNVTPALHPEMILAATNNADIVDA 248 GPTFGAMMISGQKAAHLALKALG PN +DG + +HPE+ILAA ++A+I DA Sbjct: 300 GPTFGAMMISGQKAAHLALKALGLPNALDG---SYVGGIHPELILAAADSAEIADA 352
>THI4_ARATH (Q38814) Thiazole biosynthetic enzyme, chloroplast precursor (ARA6)| Length = 349 Score = 177 bits (450), Expect = 2e-44 Identities = 94/116 (81%), Positives = 100/116 (86%) Frame = -3 Query: 595 FGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM 416 FGATGVKRL+ IGMI VPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM Sbjct: 237 FGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM 296 Query: 415 GPTFGAMMISGQKAAHLALKALGRPNGIDGTLKNVTPALHPEMILAATNNADIVDA 248 GPTFGAMMISGQKA LALKALG PN IDGTL L PE++LAA ++A+ VDA Sbjct: 297 GPTFGAMMISGQKAGQLALKALGLPNAIDGTL---VGNLSPELVLAAADSAETVDA 349
>THI4_FUSSH (P23617) Thiazole biosynthetic enzyme, mitochondrial precursor| (Stress-inducible protein sti35) Length = 324 Score = 103 bits (258), Expect = 3e-22 Identities = 52/81 (64%), Positives = 65/81 (80%) Frame = -3 Query: 592 GATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMG 413 GA VKRL +G I+ + GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMG Sbjct: 235 GAFCVKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMG 294 Query: 412 PTFGAMMISGQKAAHLALKAL 350 PTFGAM++SG KAA ALK + Sbjct: 295 PTFGAMVLSGLKAAEEALKVI 315
>THI4_FUSOX (P23618) Thiazole biosynthetic enzyme, mitochondrial precursor| (Stress-inducible protein sti35) Length = 320 Score = 99.0 bits (245), Expect = 9e-21 Identities = 51/79 (64%), Positives = 62/79 (78%) Frame = -3 Query: 592 GATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMG 413 GA VKRL + I+ + GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMG Sbjct: 231 GAFCVKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMG 290 Query: 412 PTFGAMMISGQKAAHLALK 356 PTFGAM +SG KAA ALK Sbjct: 291 PTFGAMALSGLKAAEEALK 309
>THI4_ASPOR (Q9UUZ9) Thiazole biosynthetic enzyme, mitochondrial precursor| Length = 327 Score = 97.1 bits (240), Expect = 4e-20 Identities = 49/80 (61%), Positives = 61/80 (76%) Frame = -3 Query: 595 FGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM 416 FGA KRL +G + + GM+ LDMN+AEDAIV+ TREV G+I+ GME++EIDG RM Sbjct: 237 FGAFCAKRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRM 296 Query: 415 GPTFGAMMISGQKAAHLALK 356 GPTFGAM++SG KAA ALK Sbjct: 297 GPTFGAMVLSGVKAAEEALK 316
>THI4_UROFA (Q9UVF8) Thiazole biosynthetic enzyme, mitochondrial precursor| Length = 338 Score = 94.4 bits (233), Expect = 2e-19 Identities = 45/84 (53%), Positives = 63/84 (75%) Frame = -3 Query: 595 FGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM 416 FGA VKR+ G+ + + M+ LDM AED I TRE++PG+IV GME++E DG+ RM Sbjct: 242 FGAFCVKRVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARM 301 Query: 415 GPTFGAMMISGQKAAHLALKALGR 344 GPTFGAM++SG++AA +AL++L R Sbjct: 302 GPTFGAMLLSGKRAAEVALQSLDR 325
>THI2_SCHPO (P40998) Thiazole biosynthetic enzyme, mitochondrial precursor| Length = 328 Score = 91.7 bits (226), Expect = 1e-18 Identities = 49/79 (62%), Positives = 56/79 (70%) Frame = -3 Query: 595 FGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM 416 FGA VKRL ++ + M+ LDMN AED IV+ TREV PGMIV GME++E DGA RM Sbjct: 236 FGAFCVKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRM 295 Query: 415 GPTFGAMMISGQKAAHLAL 359 GPTFG MM SG KAA AL Sbjct: 296 GPTFGGMMFSGIKAAQEAL 314
>THI4_AERPE (Q9Y9Z0) Putative thiazole biosynthetic enzyme| Length = 274 Score = 71.6 bits (174), Expect = 2e-12 Identities = 37/81 (45%), Positives = 55/81 (67%) Frame = -3 Query: 589 ATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGP 410 A ++L + GM++A + + + +ED +V T EV PG++V G+ VAE+ G PRMGP Sbjct: 182 AVVTRKLAERGMVEASK-LGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGP 240 Query: 409 TFGAMMISGQKAAHLALKALG 347 TFGAM++SG+KAA L + LG Sbjct: 241 TFGAMLLSGEKAAALIGEKLG 261
>THI4_YEAST (P32318) Thiazole biosynthetic enzyme, mitochondrial precursor| Length = 326 Score = 71.2 bits (173), Expect = 2e-12 Identities = 43/82 (52%), Positives = 49/82 (59%), Gaps = 2/82 (2%) Frame = -3 Query: 595 FGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREV--VPGMIVTGMEVAEIDGAP 422 FGA KR+ DI Q + GMK LDMN AE +V + V M GMEVAE+DG Sbjct: 241 FGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLN 300 Query: 421 RMGPTFGAMMISGQKAAHLALK 356 RMGPTFGAM +SG AA LK Sbjct: 301 RMGPTFGAMALSGVHAAEQILK 322
>THI4_PYRKO (Q5JD25) Putative thiazole biosynthetic enzyme| Length = 251 Score = 69.7 bits (169), Expect = 6e-12 Identities = 37/83 (44%), Positives = 50/83 (60%) Frame = -3 Query: 592 GATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMG 413 GA + L G+I+A+PG + E+ V TREV PG+ TGM + GAPRMG Sbjct: 169 GAQISQHLLKRGLIKAIPGEGPMWAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMG 228 Query: 412 PTFGAMMISGQKAAHLALKALGR 344 P FG M++SG+KAA L+ LG+ Sbjct: 229 PIFGGMLLSGRKAALEILQKLGK 251
>THI4_PYRHO (O59082) Putative thiazole biosynthetic enzyme| Length = 255 Score = 69.7 bits (169), Expect = 6e-12 Identities = 38/81 (46%), Positives = 48/81 (59%) Frame = -3 Query: 592 GATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMG 413 GA + L G+++ +PG A+ E V+ TREV PG+ VTGM I GAPRMG Sbjct: 173 GAQVAQFLVKRGLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMG 232 Query: 412 PTFGAMMISGQKAAHLALKAL 350 P FG M +SG+KAA LK L Sbjct: 233 PIFGGMFLSGRKAAQEILKKL 253
>THI4_PYRFU (Q8U0Q5) Putative thiazole biosynthetic enzyme| Length = 252 Score = 69.3 bits (168), Expect = 8e-12 Identities = 37/82 (45%), Positives = 48/82 (58%) Frame = -3 Query: 592 GATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMG 413 GA + L G+I+ +PG A+ E V T+EV PG+ VTGM + GAPRMG Sbjct: 170 GAQVTQFLLKRGLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMG 229 Query: 412 PTFGAMMISGQKAAHLALKALG 347 P FG M +SG+KAA L+ LG Sbjct: 230 PIFGGMFLSGRKAAMEILQKLG 251
>THI4_PYRAB (Q9V0J8) Putative thiazole biosynthetic enzyme| Length = 252 Score = 68.2 bits (165), Expect = 2e-11 Identities = 38/81 (46%), Positives = 47/81 (58%) Frame = -3 Query: 592 GATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMG 413 GA + L G+I+ +PG A+ E V TREV PG+ VTGM I GAPRMG Sbjct: 170 GAQVAQFLLKRGLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMG 229 Query: 412 PTFGAMMISGQKAAHLALKAL 350 P FG M +SG+KAA L+ L Sbjct: 230 PIFGGMFLSGKKAAQEILEKL 250
>THI4_THEMA (Q9WZP4) Putative thiazole biosynthetic enzyme| Length = 250 Score = 60.5 bits (145), Expect = 4e-09 Identities = 27/59 (45%), Positives = 39/59 (66%) Frame = -3 Query: 526 LDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 350 +D + AE +V T E+ PG++V+GM V + G PRMGP FG M++SGQK A + + L Sbjct: 191 MDADEAEKFVVDNTGEIFPGLLVSGMAVCAVHGGPRMGPIFGGMILSGQKVARIVSERL 249
>THI4_METAC (Q8TM19) Putative thiazole biosynthetic enzyme| Length = 260 Score = 59.3 bits (142), Expect = 8e-09 Identities = 31/75 (41%), Positives = 44/75 (58%) Frame = -3 Query: 574 RLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM 395 ++ ++G++ G K + E V T+E+ PG+IV GM APRMGP FG M Sbjct: 187 KIGELGLL----GEKPMWSEVGERLAVNATQEIYPGLIVAGMAANAATRAPRMGPVFGGM 242 Query: 394 MISGQKAAHLALKAL 350 ++SG+KAA LAL L Sbjct: 243 LLSGEKAAKLALDRL 257
>THI4_METMA (Q8Q0B5) Putative thiazole biosynthetic enzyme| Length = 260 Score = 58.2 bits (139), Expect = 2e-08 Identities = 30/63 (47%), Positives = 37/63 (58%) Frame = -3 Query: 538 GMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLAL 359 G K + E V T+E+ PG+IV GM APRMGP FG M++SG+KAA LAL Sbjct: 195 GEKPMWSEVGERLAVDATQEIYPGLIVAGMAANAATRAPRMGPVFGGMLLSGEKAAKLAL 254 Query: 358 KAL 350 L Sbjct: 255 DRL 257
>THI4_METTH (O27657) Putative thiazole biosynthetic enzyme| Length = 266 Score = 57.0 bits (136), Expect = 4e-08 Identities = 25/65 (38%), Positives = 41/65 (63%) Frame = -3 Query: 544 VPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHL 365 + G +++ + E A++ TREV P + V GM + GAPRMGP FG M++SG++ A + Sbjct: 201 IQGERSMWADVGEAALIENTREVYPNLYVAGMASNAVYGAPRMGPIFGGMLVSGRRVAEM 260 Query: 364 ALKAL 350 ++ L Sbjct: 261 IIEKL 265
>THI4_METMP (Q6LXJ8) Putative thiazole biosynthetic enzyme| Length = 262 Score = 55.8 bits (133), Expect = 9e-08 Identities = 31/79 (39%), Positives = 46/79 (58%) Frame = -3 Query: 586 TGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPT 407 T ++ +D+G+ VPG K++ + E+++ R TREV PG+ V GM RMG Sbjct: 183 TLARKNKDLGI--EVPGEKSMWADKGENSLTRNTREVFPGLYVCGMAANAYHAGYRMGAI 240 Query: 406 FGAMMISGQKAAHLALKAL 350 FG M +SG+K A L L+ L Sbjct: 241 FGGMYLSGKKCAELILEKL 259
>THI4_HALSA (Q9HMC7) Putative thiazole biosynthetic enzyme| Length = 310 Score = 54.3 bits (129), Expect = 3e-07 Identities = 25/64 (39%), Positives = 40/64 (62%) Frame = -3 Query: 541 PGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLA 362 PG ++ + +ED +V T +V G++ G+ A + G RMGPTFGAM++SG+ AA+ Sbjct: 227 PGHDSMWVADSEDKVVEQTGKVHDGLVTAGLSTATVHGLTRMGPTFGAMLLSGKVAANAV 286 Query: 361 LKAL 350 + L Sbjct: 287 MDEL 290
>THI4_POPEU (P84548) Thiazole biosynthetic enzyme (Fragments)| Length = 48 Score = 53.5 bits (127), Expect = 4e-07 Identities = 26/31 (83%), Positives = 28/31 (90%) Frame = -3 Query: 511 AEDAIVRLTREVVPGMIVTGMEVAEIDGAPR 419 AED IV+ RE+VPGMIVTGMEVAEIDGAPR Sbjct: 18 AEDLIVKGGREIVPGMIVTGMEVAEIDGAPR 48
>THI4_ARCFU (O29556) Putative thiazole biosynthetic enzyme| Length = 260 Score = 53.1 bits (126), Expect = 6e-07 Identities = 26/66 (39%), Positives = 38/66 (57%) Frame = -3 Query: 547 AVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAH 368 +V G ++ AE IV T ++V G+ GM VA + PRMGP FG M++SG+K A Sbjct: 193 SVVGERSAYSEVAEREIVEKTGKIVKGLYAAGMAVAAVHNLPRMGPIFGGMLLSGKKVAE 252 Query: 367 LALKAL 350 + + L Sbjct: 253 IVAEDL 258
>THI4_METJA (Q58018) Putative thiazole biosynthetic enzyme| Length = 263 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/65 (41%), Positives = 36/65 (55%) Frame = -3 Query: 544 VPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHL 365 VPG K++ E+A++R TREV P + V GM G RMG FG M +SG+ A L Sbjct: 195 VPGEKSMWAEKGENALLRNTREVYPNLFVCGMAANASHGGYRMGAIFGGMYLSGKLCAEL 254 Query: 364 ALKAL 350 + L Sbjct: 255 ITEKL 259
>RPOB_LEPBI (Q9KK59) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1228 Score = 35.0 bits (79), Expect = 0.16 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Frame = -3 Query: 508 EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM-MISGQKAAHLALKALGRPNGI 332 E ++R+ EV PG I+ GM + G + P + + I G+KA + +L PNG Sbjct: 878 ESGVIRVGAEVKPGDILVGMVTPK--GETDLTPEYKLLHSIFGEKAKEVRDSSLRMPNGF 935 Query: 331 DGTLKNV 311 +GT+ ++ Sbjct: 936 EGTVIDI 942
>RPOB_LEPIN (Q8F0S2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1226 Score = 34.7 bits (78), Expect = 0.21 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Frame = -3 Query: 508 EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM-MISGQKAAHLALKALGRPNGI 332 E ++R+ EV PG I+ GM + G + P + + I G+KA + +L PNG Sbjct: 876 ETGVIRIGAEVKPGDILVGMVTPK--GETDLTPEYKLLHSIFGEKAKDVRDSSLRMPNGF 933 Query: 331 DGTLKNV 311 +GT+ ++ Sbjct: 934 EGTVIDI 940
>RPOB_LEPIC (Q72UA8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1226 Score = 34.7 bits (78), Expect = 0.21 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Frame = -3 Query: 508 EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM-MISGQKAAHLALKALGRPNGI 332 E ++R+ EV PG I+ GM + G + P + + I G+KA + +L PNG Sbjct: 876 ETGVIRIGAEVKPGDILVGMVTPK--GETDLTPEYKLLHSIFGEKAKDVRDSSLRMPNGF 933 Query: 331 DGTLKNV 311 +GT+ ++ Sbjct: 934 EGTVIDI 940
>RPOBC_HELHP (Q7VJ82) Bifunctional DNA-directed RNA polymerase, beta and beta'| chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit); DNA-directed RNA polymerase beta' chain (Transcri Length = 2894 Score = 32.0 bits (71), Expect = 1.4 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%) Frame = -3 Query: 544 VPGMKALDM-NTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMM---ISGQK 377 +PG K + + E IVR+ V GMI+ G ++ + PT + I G+K Sbjct: 865 IPGTKEAETAHLDESGIVRIGTYVSAGMILVG----KVSPKGEVKPTPEERLLRAIFGEK 920 Query: 376 AAHLALKALGRPNGIDGTLKNV 311 A H+ K+L P ++GT+ +V Sbjct: 921 AGHVVNKSLYCPPSLEGTVVDV 942
>GSCL_HUMAN (O15499) Homeobox protein goosecoid-like (GSC-2)| Length = 205 Score = 31.6 bits (70), Expect = 1.8 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%) Frame = +3 Query: 336 PFGRPRA---LSARCAAFWPEIIMAPKVGPILGAPSISATSMPVTIMPGTTSRVRR 494 P G P A L AR A WP + + P V LGAP+ + ++P + PG+ R RR Sbjct: 76 PCGPPEAAAGLGARLA--WP-LRLGPAVPLSLGAPAGGSGALPGAVGPGSQRRTRR 128
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 28.1 bits (61), Expect(2) = 2.1 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%) Frame = -3 Query: 541 PGMKALDMNTAE-------DAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMIS 386 PG KA+DM E A+V+ +E +P + GME+A P M P G +++ Sbjct: 5338 PG-KAMDMQLDEMDRMSMIAAVVQQQQEHLPPALPAGMELASQQAPPAMAPPPGDSLVT 5395 Score = 21.6 bits (44), Expect(2) = 2.1 Identities = 8/16 (50%), Positives = 8/16 (50%) Frame = -2 Query: 581 GQAAPGHRHDPGGARD 534 G PG H PG A D Sbjct: 5328 GSVQPGSHHHPGKAMD 5343
>ARNB_PSEU2 (Q4ZSZ4) UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate| aminotransferase (EC 2.6.1.-) (UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase) (UDP-Ara4O aminotransferase) (Polymyxin resistance protein pmrH) Length = 382 Score = 30.4 bits (67), Expect = 4.0 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Frame = -3 Query: 508 EDAIVRLTREVVPGMIVTGMEVAEIDG--APRMGPTFGAMMISGQKAAHLALKALG 347 ++ I +TR + G I TG E +++ A R+G + S A H+AL ALG Sbjct: 15 DEEIAAVTRVLRSGWITTGPECQKLEEEFAARVGARHAVALSSATGAMHVALLALG 70
>RPOB_BORGA (Q661M9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1155 Score = 30.0 bits (66), Expect = 5.3 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Frame = -3 Query: 508 EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMM-ISGQKAAHLALKALGRPNGI 332 E+ I+R+ V PG I+ G + +G + P F + I G+KA + +L P+G Sbjct: 816 ENGIIRIGTYVKPGDILVGKVTPKSEGD--ITPEFRLLTSIFGEKAKDVKNNSLKVPHGT 873 Query: 331 DGTLKNV 311 +GT+ +V Sbjct: 874 EGTVIDV 880
>RPOB_BORBU (Q59191) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1155 Score = 30.0 bits (66), Expect = 5.3 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Frame = -3 Query: 508 EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMM-ISGQKAAHLALKALGRPNGI 332 E+ I+R+ V PG I+ G + +G + P F + I G+KA + +L P+G Sbjct: 816 ENGIIRIGTYVKPGDILVGKVTPKSEGD--ITPEFRLLTSIFGEKAKDVKNNSLKVPHGT 873 Query: 331 DGTLKNV 311 +GT+ +V Sbjct: 874 EGTVIDV 880
>PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Activated in prostate cancer protein) Length = 2839 Score = 30.0 bits (66), Expect = 5.3 Identities = 18/45 (40%), Positives = 24/45 (53%) Frame = +2 Query: 401 AEGRAHSRGTVDLGDLHAGDNHARDDLAGEAHDGVLGRVHVKRLH 535 ++G A GT++ GD N A LAG AH VL +H +LH Sbjct: 2655 SQGAASQEGTMNRGDFLLSVNGA--SLAGLAHGNVLKVLHQAQLH 2697
>YWS4_CAEEL (Q10940) Hypothetical protein B0310.4| Length = 112 Score = 29.6 bits (65), Expect = 6.9 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 5/57 (8%) Frame = +2 Query: 386 GDHHGAE---GRAHSRGTVDLGDLHAGDNHARDDLAGEAHDGVL--GRVHVKRLHPG 541 G+ H E G H RG G+ H G+ H + GE H G G+ H H G Sbjct: 18 GETHRGETHRGETH-RGKTHRGETHRGETHRGETHRGETHRGETHRGKTHRGETHRG 73
>YNTC_AZOCA (Q04855) Hypothetical 80.5 kDa protein in ntrC 5'region (ORF1)| Length = 735 Score = 29.3 bits (64), Expect = 9.0 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = +2 Query: 461 NHARDDLAGEAHDGVLGRVHVKRLHPGHRLD 553 NHA + + G +GV+GR + + P H +D Sbjct: 213 NHAAEAIFGHTREGVIGRPMTETIIPAHYID 243
>COBQ_MYCTU (P0A532) Cobyric acid synthase| Length = 494 Score = 29.3 bits (64), Expect = 9.0 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 13/68 (19%) Frame = -3 Query: 559 GMIQAVPGMKALDMNTA--EDAIVRLTR-----------EVVPGMIVTGMEVAEIDGAPR 419 G + V G+ LD+ TA ++RL R E+ G I G E G R Sbjct: 355 GQVTEVEGLGLLDVETAFSPHKVLRLPRGEGLGVPASGYEIHHGRITRGDTAEEFLGGAR 414 Query: 418 MGPTFGAM 395 GP FG M Sbjct: 415 DGPVFGTM 422
>COBQ_MYCBO (P0A533) Cobyric acid synthase| Length = 494 Score = 29.3 bits (64), Expect = 9.0 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 13/68 (19%) Frame = -3 Query: 559 GMIQAVPGMKALDMNTA--EDAIVRLTR-----------EVVPGMIVTGMEVAEIDGAPR 419 G + V G+ LD+ TA ++RL R E+ G I G E G R Sbjct: 355 GQVTEVEGLGLLDVETAFSPHKVLRLPRGEGLGVPASGYEIHHGRITRGDTAEEFLGGAR 414 Query: 418 MGPTFGAM 395 GP FG M Sbjct: 415 DGPVFGTM 422
>PRIM_SYNP7 (P74893) DNA primase (EC 2.7.7.-)| Length = 694 Score = 29.3 bits (64), Expect = 9.0 Identities = 13/20 (65%), Positives = 13/20 (65%) Frame = -3 Query: 310 TPALHPEMILAATNNADIVD 251 TP LHPE I A ADIVD Sbjct: 3 TPRLHPETIAAVKERADIVD 22
>EMRB_HAEIN (P44927) Multidrug resistance protein B homolog| Length = 510 Score = 29.3 bits (64), Expect = 9.0 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Frame = +3 Query: 249 ASTMSALLVAARIISGCSAG-VTFLSVPSMPFGRPRALSARCAAFWP-EIIMAPKVGPIL 422 A ++ AL++ R+I G AG V LS + P AFW I++AP GPIL Sbjct: 103 ADSLEALIIF-RVIQGAVAGPVIPLSQSLLLNNYPPEKRGMALAFWSMTIVVAPIFGPIL 161 Query: 423 G 425 G Sbjct: 162 G 162
>WNT6_HUMAN (Q9Y6F9) Protein Wnt-6 precursor| Length = 365 Score = 29.3 bits (64), Expect = 9.0 Identities = 12/23 (52%), Positives = 12/23 (52%) Frame = +1 Query: 514 CSCQAPSSRAPPGSCRCPGAA*P 582 C CQAP RAPP PG P Sbjct: 132 CGCQAPRGRAPPRPSGLPGTPGP 154
>ENV_EIAV5 (P22430) Env polyprotein precursor (Coat polyprotein) [Contains:| Coat protein GP90; Coat protein GP45] Length = 860 Score = 29.3 bits (64), Expect = 9.0 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%) Frame = +3 Query: 18 CYRRTH------HPWXLTWGRAEQST 77 C RTH HPW ++WG +ST Sbjct: 536 CIERTHVFCHTGHPWNMSWGHLNEST 561
>RPOB_GEOSL (Q748Y6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1370 Score = 29.3 bits (64), Expect = 9.0 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = -3 Query: 508 EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMM-ISGQKAAHLALKALGRPNGI 332 E I+R+ EV PG I+ G + G ++ P + I G+KA + +L P G+ Sbjct: 875 ESGIIRIGAEVKPGDILVGKITPK--GETQLSPEEKLLRAIFGEKAGDVRDTSLRVPPGV 932 Query: 331 DGTL 320 +GT+ Sbjct: 933 EGTV 936
>ENV_EIAVY (P06751) Env polyprotein precursor (Coat polyprotein) [Contains:| Coat protein GP90; Coat protein GP45] Length = 859 Score = 29.3 bits (64), Expect = 9.0 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%) Frame = +3 Query: 18 CYRRTH------HPWXLTWGRAEQST 77 C RTH HPW ++WG +ST Sbjct: 535 CIERTHVFCHTGHPWNMSWGHLNEST 560
>ENV_EIAVW (P16082) Env polyprotein precursor (Coat polyprotein) [Contains:| Coat protein GP90; Coat protein GP45] Length = 859 Score = 29.3 bits (64), Expect = 9.0 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%) Frame = +3 Query: 18 CYRRTH------HPWXLTWGRAEQST 77 C RTH HPW ++WG +ST Sbjct: 535 CIERTHVFCHTGHPWNMSWGHLNEST 560
>ENV_EIAVC (P32541) Env polyprotein precursor (Coat polyprotein) [Contains:| Coat protein GP90; Coat protein GP45] Length = 859 Score = 29.3 bits (64), Expect = 9.0 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%) Frame = +3 Query: 18 CYRRTH------HPWXLTWGRAEQST 77 C RTH HPW ++WG +ST Sbjct: 535 CIERTHVFCHTGHPWNMSWGHLNEST 560
>ENV_EIAV9 (P11306) Env polyprotein precursor (Coat polyprotein) [Contains:| Coat protein GP90; Coat protein GP45] Length = 859 Score = 29.3 bits (64), Expect = 9.0 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%) Frame = +3 Query: 18 CYRRTH------HPWXLTWGRAEQST 77 C RTH HPW ++WG +ST Sbjct: 535 CIERTHVFCHTGHPWNMSWGHLNEST 560
>ENV_EIAV3 (P22429) Env polyprotein precursor (Coat polyprotein) [Contains:| Coat protein GP90; Coat protein GP45] Length = 859 Score = 29.3 bits (64), Expect = 9.0 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%) Frame = +3 Query: 18 CYRRTH------HPWXLTWGRAEQST 77 C RTH HPW ++WG +ST Sbjct: 535 CIERTHVFCHTGHPWNMSWGHLNEST 560
>ENV_EIAV2 (P22428) Env polyprotein precursor (Coat polyprotein) [Contains:| Coat protein GP90; Coat protein GP45] Length = 859 Score = 29.3 bits (64), Expect = 9.0 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%) Frame = +3 Query: 18 CYRRTH------HPWXLTWGRAEQST 77 C RTH HPW ++WG +ST Sbjct: 535 CIERTHVFCHTGHPWNMSWGHLNEST 560
>ENV_EIAV1 (P22427) Env polyprotein precursor (Coat polyprotein) [Contains:| Coat protein GP90; Coat protein GP45] Length = 859 Score = 29.3 bits (64), Expect = 9.0 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%) Frame = +3 Query: 18 CYRRTH------HPWXLTWGRAEQST 77 C RTH HPW ++WG +ST Sbjct: 535 CIERTHVFCHTGHPWNMSWGHLNEST 560 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,288,642 Number of Sequences: 219361 Number of extensions: 1363692 Number of successful extensions: 4618 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 4419 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4603 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)