Clone Information

BLAST Search Result

Clone Name	rbah61i04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	THI42_MAIZE (Q41739) Thiazole biosynthetic enzyme 1-2, chloropla...	188	9e-48
2	THI4_CITSI (O23787) Thiazole biosynthetic enzyme, chloroplast pr...	181	1e-45
3	THI41_MAIZE (Q41738) Thiazole biosynthetic enzyme 1-1, chloropla...	181	2e-45
4	THI4_ALNGL (Q38709) Thiazole biosynthetic enzyme, chloroplast pr...	178	9e-45
5	THI4_ARATH (Q38814) Thiazole biosynthetic enzyme, chloroplast pr...	177	2e-44
6	THI4_FUSSH (P23617) Thiazole biosynthetic enzyme, mitochondrial ...	103	3e-22
7	THI4_FUSOX (P23618) Thiazole biosynthetic enzyme, mitochondrial ...	99	9e-21
8	THI4_ASPOR (Q9UUZ9) Thiazole biosynthetic enzyme, mitochondrial ...	97	4e-20
9	THI4_UROFA (Q9UVF8) Thiazole biosynthetic enzyme, mitochondrial ...	94	2e-19
10	THI2_SCHPO (P40998) Thiazole biosynthetic enzyme, mitochondrial ...	92	1e-18
11	THI4_AERPE (Q9Y9Z0) Putative thiazole biosynthetic enzyme	72	2e-12
12	THI4_YEAST (P32318) Thiazole biosynthetic enzyme, mitochondrial ...	71	2e-12
13	THI4_PYRKO (Q5JD25) Putative thiazole biosynthetic enzyme	70	6e-12
14	THI4_PYRHO (O59082) Putative thiazole biosynthetic enzyme	70	6e-12
15	THI4_PYRFU (Q8U0Q5) Putative thiazole biosynthetic enzyme	69	8e-12
16	THI4_PYRAB (Q9V0J8) Putative thiazole biosynthetic enzyme	68	2e-11
17	THI4_THEMA (Q9WZP4) Putative thiazole biosynthetic enzyme	60	4e-09
18	THI4_METAC (Q8TM19) Putative thiazole biosynthetic enzyme	59	8e-09
19	THI4_METMA (Q8Q0B5) Putative thiazole biosynthetic enzyme	58	2e-08
20	THI4_METTH (O27657) Putative thiazole biosynthetic enzyme	57	4e-08
21	THI4_METMP (Q6LXJ8) Putative thiazole biosynthetic enzyme	56	9e-08
22	THI4_HALSA (Q9HMC7) Putative thiazole biosynthetic enzyme	54	3e-07
23	THI4_POPEU (P84548) Thiazole biosynthetic enzyme (Fragments)	54	4e-07
24	THI4_ARCFU (O29556) Putative thiazole biosynthetic enzyme	53	6e-07
25	THI4_METJA (Q58018) Putative thiazole biosynthetic enzyme	51	3e-06
26	RPOB_LEPBI (Q9KK59) DNA-directed RNA polymerase beta chain (EC 2...	35	0.16
27	RPOB_LEPIN (Q8F0S2) DNA-directed RNA polymerase beta chain (EC 2...	35	0.21
28	RPOB_LEPIC (Q72UA8) DNA-directed RNA polymerase beta chain (EC 2...	35	0.21
29	RPOBC_HELHP (Q7VJ82) Bifunctional DNA-directed RNA polymerase, b...	32	1.4
30	GSCL_HUMAN (O15499) Homeobox protein goosecoid-like (GSC-2)	32	1.8
31	SPEN_DROME (Q8SX83) Protein split ends	28	2.1
32	ARNB_PSEU2 (Q4ZSZ4) UDP-4-amino-4-deoxy-L-arabinose--oxoglutarat...	30	4.0
33	RPOB_BORGA (Q661M9) DNA-directed RNA polymerase beta chain (EC 2...	30	5.3
34	RPOB_BORBU (Q59191) DNA-directed RNA polymerase beta chain (EC 2...	30	5.3
35	PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain...	30	5.3
36	YWS4_CAEEL (Q10940) Hypothetical protein B0310.4	30	6.9
37	YNTC_AZOCA (Q04855) Hypothetical 80.5 kDa protein in ntrC 5'regi...	29	9.0
38	COBQ_MYCTU (P0A532) Cobyric acid synthase	29	9.0
39	COBQ_MYCBO (P0A533) Cobyric acid synthase	29	9.0
40	PRIM_SYNP7 (P74893) DNA primase (EC 2.7.7.-)	29	9.0
41	EMRB_HAEIN (P44927) Multidrug resistance protein B homolog	29	9.0
42	WNT6_HUMAN (Q9Y6F9) Protein Wnt-6 precursor	29	9.0
43	ENV_EIAV5 (P22430) Env polyprotein precursor (Coat polyprotein) ...	29	9.0
44	RPOB_GEOSL (Q748Y6) DNA-directed RNA polymerase beta chain (EC 2...	29	9.0
45	ENV_EIAVY (P06751) Env polyprotein precursor (Coat polyprotein) ...	29	9.0
46	ENV_EIAVW (P16082) Env polyprotein precursor (Coat polyprotein) ...	29	9.0
47	ENV_EIAVC (P32541) Env polyprotein precursor (Coat polyprotein) ...	29	9.0
48	ENV_EIAV9 (P11306) Env polyprotein precursor (Coat polyprotein) ...	29	9.0
49	ENV_EIAV3 (P22429) Env polyprotein precursor (Coat polyprotein) ...	29	9.0
50	ENV_EIAV2 (P22428) Env polyprotein precursor (Coat polyprotein) ...	29	9.0
51	ENV_EIAV1 (P22427) Env polyprotein precursor (Coat polyprotein) ...	29	9.0

>THI42_MAIZE (Q41739) Thiazole biosynthetic enzyme 1-2, chloroplast precursor|
          Length = 354

 Score =  188 bits (478), Expect = 9e-48
 Identities = 95/116 (81%), Positives = 105/116 (90%)
 Frame = -3

Query: 595 FGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM 416
           FGATGVKRLQDIGMI AVPGMKALDMN AED IVRLTREVVPGMIVTGMEVAEIDGAPRM
Sbjct: 240 FGATGVKRLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRM 299

Query: 415 GPTFGAMMISGQKAAHLALKALGRPNGIDGTLKNVTPALHPEMILAATNNADIVDA 248
           GPTFGAMMISGQKAAHLALKALGRPN +DGT+  V+PAL  E ++A+ ++ ++VDA
Sbjct: 300 GPTFGAMMISGQKAAHLALKALGRPNAVDGTIPEVSPALREEFVIASKDD-EVVDA 354

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>THI4_CITSI (O23787) Thiazole biosynthetic enzyme, chloroplast precursor|
          Length = 356

 Score =  181 bits (459), Expect = 1e-45
 Identities = 92/116 (79%), Positives = 103/116 (88%)
 Frame = -3

Query: 595 FGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM 416
           FGATGVKRL+ IGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM
Sbjct: 244 FGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM 303

Query: 415 GPTFGAMMISGQKAAHLALKALGRPNGIDGTLKNVTPALHPEMILAATNNADIVDA 248
           GPTFGAMMISGQKAAHLALK+LG+PN +DGT       +HPE+ILAA ++A+  DA
Sbjct: 304 GPTFGAMMISGQKAAHLALKSLGQPNALDGT---YVGGVHPELILAAADSAETADA 356

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>THI41_MAIZE (Q41738) Thiazole biosynthetic enzyme 1-1, chloroplast precursor|
          Length = 354

 Score =  181 bits (458), Expect = 2e-45
 Identities = 94/116 (81%), Positives = 104/116 (89%)
 Frame = -3

Query: 595 FGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM 416
           FGATGVKRLQDIGMI AVPGMKALDMNTAED IVRLTREVVPGMIVTGMEVAEIDGAPRM
Sbjct: 243 FGATGVKRLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRM 302

Query: 415 GPTFGAMMISGQKAAHLALKALGRPNGIDGTLKNVTPALHPEMILAATNNADIVDA 248
           GPTFGAMMISGQKAAHLALKALGRPN +DGT+   +P L  E+++A  ++ ++VDA
Sbjct: 303 GPTFGAMMISGQKAAHLALKALGRPNAVDGTM---SPPLREELMIAYKDD-EVVDA 354

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>THI4_ALNGL (Q38709) Thiazole biosynthetic enzyme, chloroplast precursor (AG6)|
          Length = 352

 Score =  178 bits (452), Expect = 9e-45
 Identities = 91/116 (78%), Positives = 100/116 (86%)
 Frame = -3

Query: 595 FGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM 416
           FGATGVK L+ IGMI  VPGMKALDMN AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRM
Sbjct: 240 FGATGVKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRM 299

Query: 415 GPTFGAMMISGQKAAHLALKALGRPNGIDGTLKNVTPALHPEMILAATNNADIVDA 248
           GPTFGAMMISGQKAAHLALKALG PN +DG   +    +HPE+ILAA ++A+I DA
Sbjct: 300 GPTFGAMMISGQKAAHLALKALGLPNALDG---SYVGGIHPELILAAADSAEIADA 352

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>THI4_ARATH (Q38814) Thiazole biosynthetic enzyme, chloroplast precursor (ARA6)|
          Length = 349

 Score =  177 bits (450), Expect = 2e-44
 Identities = 94/116 (81%), Positives = 100/116 (86%)
 Frame = -3

Query: 595 FGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM 416
           FGATGVKRL+ IGMI  VPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM
Sbjct: 237 FGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM 296

Query: 415 GPTFGAMMISGQKAAHLALKALGRPNGIDGTLKNVTPALHPEMILAATNNADIVDA 248
           GPTFGAMMISGQKA  LALKALG PN IDGTL      L PE++LAA ++A+ VDA
Sbjct: 297 GPTFGAMMISGQKAGQLALKALGLPNAIDGTL---VGNLSPELVLAAADSAETVDA 349

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>THI4_FUSSH (P23617) Thiazole biosynthetic enzyme, mitochondrial precursor|
           (Stress-inducible protein sti35)
          Length = 324

 Score =  103 bits (258), Expect = 3e-22
 Identities = 52/81 (64%), Positives = 65/81 (80%)
 Frame = -3

Query: 592 GATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMG 413
           GA  VKRL  +G I+ + GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMG
Sbjct: 235 GAFCVKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMG 294

Query: 412 PTFGAMMISGQKAAHLALKAL 350
           PTFGAM++SG KAA  ALK +
Sbjct: 295 PTFGAMVLSGLKAAEEALKVI 315

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>THI4_FUSOX (P23618) Thiazole biosynthetic enzyme, mitochondrial precursor|
           (Stress-inducible protein sti35)
          Length = 320

 Score = 99.0 bits (245), Expect = 9e-21
 Identities = 51/79 (64%), Positives = 62/79 (78%)
 Frame = -3

Query: 592 GATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMG 413
           GA  VKRL  +  I+ + GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMG
Sbjct: 231 GAFCVKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMG 290

Query: 412 PTFGAMMISGQKAAHLALK 356
           PTFGAM +SG KAA  ALK
Sbjct: 291 PTFGAMALSGLKAAEEALK 309

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>THI4_ASPOR (Q9UUZ9) Thiazole biosynthetic enzyme, mitochondrial precursor|
          Length = 327

 Score = 97.1 bits (240), Expect = 4e-20
 Identities = 49/80 (61%), Positives = 61/80 (76%)
 Frame = -3

Query: 595 FGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM 416
           FGA   KRL  +G +  + GM+ LDMN+AEDAIV+ TREV  G+I+ GME++EIDG  RM
Sbjct: 237 FGAFCAKRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRM 296

Query: 415 GPTFGAMMISGQKAAHLALK 356
           GPTFGAM++SG KAA  ALK
Sbjct: 297 GPTFGAMVLSGVKAAEEALK 316

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>THI4_UROFA (Q9UVF8) Thiazole biosynthetic enzyme, mitochondrial precursor|
          Length = 338

 Score = 94.4 bits (233), Expect = 2e-19
 Identities = 45/84 (53%), Positives = 63/84 (75%)
 Frame = -3

Query: 595 FGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM 416
           FGA  VKR+   G+ + +  M+ LDM  AED I   TRE++PG+IV GME++E DG+ RM
Sbjct: 242 FGAFCVKRVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARM 301

Query: 415 GPTFGAMMISGQKAAHLALKALGR 344
           GPTFGAM++SG++AA +AL++L R
Sbjct: 302 GPTFGAMLLSGKRAAEVALQSLDR 325

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>THI2_SCHPO (P40998) Thiazole biosynthetic enzyme, mitochondrial precursor|
          Length = 328

 Score = 91.7 bits (226), Expect = 1e-18
 Identities = 49/79 (62%), Positives = 56/79 (70%)
 Frame = -3

Query: 595 FGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRM 416
           FGA  VKRL    ++  +  M+ LDMN AED IV+ TREV PGMIV GME++E DGA RM
Sbjct: 236 FGAFCVKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRM 295

Query: 415 GPTFGAMMISGQKAAHLAL 359
           GPTFG MM SG KAA  AL
Sbjct: 296 GPTFGGMMFSGIKAAQEAL 314

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>THI4_AERPE (Q9Y9Z0) Putative thiazole biosynthetic enzyme|
          Length = 274

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 37/81 (45%), Positives = 55/81 (67%)
 Frame = -3

Query: 589 ATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGP 410
           A   ++L + GM++A   +  + +  +ED +V  T EV PG++V G+ VAE+ G PRMGP
Sbjct: 182 AVVTRKLAERGMVEASK-LGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGP 240

Query: 409 TFGAMMISGQKAAHLALKALG 347
           TFGAM++SG+KAA L  + LG
Sbjct: 241 TFGAMLLSGEKAAALIGEKLG 261

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>THI4_YEAST (P32318) Thiazole biosynthetic enzyme, mitochondrial precursor|
          Length = 326

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 43/82 (52%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
 Frame = -3

Query: 595 FGATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREV--VPGMIVTGMEVAEIDGAP 422
           FGA   KR+ DI   Q + GMK LDMN AE  +V  +     V  M   GMEVAE+DG  
Sbjct: 241 FGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLN 300

Query: 421 RMGPTFGAMMISGQKAAHLALK 356
           RMGPTFGAM +SG  AA   LK
Sbjct: 301 RMGPTFGAMALSGVHAAEQILK 322

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>THI4_PYRKO (Q5JD25) Putative thiazole biosynthetic enzyme|
          Length = 251

 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 37/83 (44%), Positives = 50/83 (60%)
 Frame = -3

Query: 592 GATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMG 413
           GA   + L   G+I+A+PG   +     E+  V  TREV PG+  TGM    + GAPRMG
Sbjct: 169 GAQISQHLLKRGLIKAIPGEGPMWAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMG 228

Query: 412 PTFGAMMISGQKAAHLALKALGR 344
           P FG M++SG+KAA   L+ LG+
Sbjct: 229 PIFGGMLLSGRKAALEILQKLGK 251

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>THI4_PYRHO (O59082) Putative thiazole biosynthetic enzyme|
          Length = 255

 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 38/81 (46%), Positives = 48/81 (59%)
 Frame = -3

Query: 592 GATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMG 413
           GA   + L   G+++ +PG  A+     E   V+ TREV PG+ VTGM    I GAPRMG
Sbjct: 173 GAQVAQFLVKRGLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMG 232

Query: 412 PTFGAMMISGQKAAHLALKAL 350
           P FG M +SG+KAA   LK L
Sbjct: 233 PIFGGMFLSGRKAAQEILKKL 253

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>THI4_PYRFU (Q8U0Q5) Putative thiazole biosynthetic enzyme|
          Length = 252

 Score = 69.3 bits (168), Expect = 8e-12
 Identities = 37/82 (45%), Positives = 48/82 (58%)
 Frame = -3

Query: 592 GATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMG 413
           GA   + L   G+I+ +PG  A+     E   V  T+EV PG+ VTGM    + GAPRMG
Sbjct: 170 GAQVTQFLLKRGLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMG 229

Query: 412 PTFGAMMISGQKAAHLALKALG 347
           P FG M +SG+KAA   L+ LG
Sbjct: 230 PIFGGMFLSGRKAAMEILQKLG 251

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>THI4_PYRAB (Q9V0J8) Putative thiazole biosynthetic enzyme|
          Length = 252

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 38/81 (46%), Positives = 47/81 (58%)
 Frame = -3

Query: 592 GATGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMG 413
           GA   + L   G+I+ +PG  A+     E   V  TREV PG+ VTGM    I GAPRMG
Sbjct: 170 GAQVAQFLLKRGLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMG 229

Query: 412 PTFGAMMISGQKAAHLALKAL 350
           P FG M +SG+KAA   L+ L
Sbjct: 230 PIFGGMFLSGKKAAQEILEKL 250

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>THI4_THEMA (Q9WZP4) Putative thiazole biosynthetic enzyme|
          Length = 250

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 27/59 (45%), Positives = 39/59 (66%)
 Frame = -3

Query: 526 LDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 350
           +D + AE  +V  T E+ PG++V+GM V  + G PRMGP FG M++SGQK A +  + L
Sbjct: 191 MDADEAEKFVVDNTGEIFPGLLVSGMAVCAVHGGPRMGPIFGGMILSGQKVARIVSERL 249

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>THI4_METAC (Q8TM19) Putative thiazole biosynthetic enzyme|
          Length = 260

 Score = 59.3 bits (142), Expect = 8e-09
 Identities = 31/75 (41%), Positives = 44/75 (58%)
 Frame = -3

Query: 574 RLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM 395
           ++ ++G++    G K +     E   V  T+E+ PG+IV GM       APRMGP FG M
Sbjct: 187 KIGELGLL----GEKPMWSEVGERLAVNATQEIYPGLIVAGMAANAATRAPRMGPVFGGM 242

Query: 394 MISGQKAAHLALKAL 350
           ++SG+KAA LAL  L
Sbjct: 243 LLSGEKAAKLALDRL 257

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>THI4_METMA (Q8Q0B5) Putative thiazole biosynthetic enzyme|
          Length = 260

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 30/63 (47%), Positives = 37/63 (58%)
 Frame = -3

Query: 538 GMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLAL 359
           G K +     E   V  T+E+ PG+IV GM       APRMGP FG M++SG+KAA LAL
Sbjct: 195 GEKPMWSEVGERLAVDATQEIYPGLIVAGMAANAATRAPRMGPVFGGMLLSGEKAAKLAL 254

Query: 358 KAL 350
             L
Sbjct: 255 DRL 257

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>THI4_METTH (O27657) Putative thiazole biosynthetic enzyme|
          Length = 266

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 25/65 (38%), Positives = 41/65 (63%)
 Frame = -3

Query: 544 VPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHL 365
           + G +++  +  E A++  TREV P + V GM    + GAPRMGP FG M++SG++ A +
Sbjct: 201 IQGERSMWADVGEAALIENTREVYPNLYVAGMASNAVYGAPRMGPIFGGMLVSGRRVAEM 260

Query: 364 ALKAL 350
            ++ L
Sbjct: 261 IIEKL 265

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>THI4_METMP (Q6LXJ8) Putative thiazole biosynthetic enzyme|
          Length = 262

 Score = 55.8 bits (133), Expect = 9e-08
 Identities = 31/79 (39%), Positives = 46/79 (58%)
 Frame = -3

Query: 586 TGVKRLQDIGMIQAVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPT 407
           T  ++ +D+G+   VPG K++  +  E+++ R TREV PG+ V GM         RMG  
Sbjct: 183 TLARKNKDLGI--EVPGEKSMWADKGENSLTRNTREVFPGLYVCGMAANAYHAGYRMGAI 240

Query: 406 FGAMMISGQKAAHLALKAL 350
           FG M +SG+K A L L+ L
Sbjct: 241 FGGMYLSGKKCAELILEKL 259

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>THI4_HALSA (Q9HMC7) Putative thiazole biosynthetic enzyme|
          Length = 310

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 25/64 (39%), Positives = 40/64 (62%)
 Frame = -3

Query: 541 PGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLA 362
           PG  ++ +  +ED +V  T +V  G++  G+  A + G  RMGPTFGAM++SG+ AA+  
Sbjct: 227 PGHDSMWVADSEDKVVEQTGKVHDGLVTAGLSTATVHGLTRMGPTFGAMLLSGKVAANAV 286

Query: 361 LKAL 350
           +  L
Sbjct: 287 MDEL 290

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>THI4_POPEU (P84548) Thiazole biosynthetic enzyme (Fragments)|
          Length = 48

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = -3

Query: 511 AEDAIVRLTREVVPGMIVTGMEVAEIDGAPR 419
           AED IV+  RE+VPGMIVTGMEVAEIDGAPR
Sbjct: 18  AEDLIVKGGREIVPGMIVTGMEVAEIDGAPR 48

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>THI4_ARCFU (O29556) Putative thiazole biosynthetic enzyme|
          Length = 260

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 26/66 (39%), Positives = 38/66 (57%)
 Frame = -3

Query: 547 AVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAH 368
           +V G ++     AE  IV  T ++V G+   GM VA +   PRMGP FG M++SG+K A 
Sbjct: 193 SVVGERSAYSEVAEREIVEKTGKIVKGLYAAGMAVAAVHNLPRMGPIFGGMLLSGKKVAE 252

Query: 367 LALKAL 350
           +  + L
Sbjct: 253 IVAEDL 258

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>THI4_METJA (Q58018) Putative thiazole biosynthetic enzyme|
          Length = 263

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 27/65 (41%), Positives = 36/65 (55%)
 Frame = -3

Query: 544 VPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHL 365
           VPG K++     E+A++R TREV P + V GM      G  RMG  FG M +SG+  A L
Sbjct: 195 VPGEKSMWAEKGENALLRNTREVYPNLFVCGMAANASHGGYRMGAIFGGMYLSGKLCAEL 254

Query: 364 ALKAL 350
             + L
Sbjct: 255 ITEKL 259

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>RPOB_LEPBI (Q9KK59) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1228

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = -3

Query: 508  EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM-MISGQKAAHLALKALGRPNGI 332
            E  ++R+  EV PG I+ GM   +  G   + P +  +  I G+KA  +   +L  PNG 
Sbjct: 878  ESGVIRVGAEVKPGDILVGMVTPK--GETDLTPEYKLLHSIFGEKAKEVRDSSLRMPNGF 935

Query: 331  DGTLKNV 311
            +GT+ ++
Sbjct: 936  EGTVIDI 942

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>RPOB_LEPIN (Q8F0S2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1226

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = -3

Query: 508  EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM-MISGQKAAHLALKALGRPNGI 332
            E  ++R+  EV PG I+ GM   +  G   + P +  +  I G+KA  +   +L  PNG 
Sbjct: 876  ETGVIRIGAEVKPGDILVGMVTPK--GETDLTPEYKLLHSIFGEKAKDVRDSSLRMPNGF 933

Query: 331  DGTLKNV 311
            +GT+ ++
Sbjct: 934  EGTVIDI 940

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>RPOB_LEPIC (Q72UA8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1226

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = -3

Query: 508  EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAM-MISGQKAAHLALKALGRPNGI 332
            E  ++R+  EV PG I+ GM   +  G   + P +  +  I G+KA  +   +L  PNG 
Sbjct: 876  ETGVIRIGAEVKPGDILVGMVTPK--GETDLTPEYKLLHSIFGEKAKDVRDSSLRMPNGF 933

Query: 331  DGTLKNV 311
            +GT+ ++
Sbjct: 934  EGTVIDI 940

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>RPOBC_HELHP (Q7VJ82) Bifunctional DNA-directed RNA polymerase, beta and beta'|
            chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase
            beta chain (Transcriptase beta chain) (RNA polymerase
            beta subunit); DNA-directed RNA polymerase beta' chain
            (Transcri
          Length = 2894

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
 Frame = -3

Query: 544  VPGMKALDM-NTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMM---ISGQK 377
            +PG K  +  +  E  IVR+   V  GMI+ G    ++     + PT    +   I G+K
Sbjct: 865  IPGTKEAETAHLDESGIVRIGTYVSAGMILVG----KVSPKGEVKPTPEERLLRAIFGEK 920

Query: 376  AAHLALKALGRPNGIDGTLKNV 311
            A H+  K+L  P  ++GT+ +V
Sbjct: 921  AGHVVNKSLYCPPSLEGTVVDV 942

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>GSCL_HUMAN (O15499) Homeobox protein goosecoid-like (GSC-2)|
          Length = 205

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +3

Query: 336 PFGRPRA---LSARCAAFWPEIIMAPKVGPILGAPSISATSMPVTIMPGTTSRVRR 494
           P G P A   L AR A  WP + + P V   LGAP+  + ++P  + PG+  R RR
Sbjct: 76  PCGPPEAAAGLGARLA--WP-LRLGPAVPLSLGAPAGGSGALPGAVGPGSQRRTRR 128

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>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 28.1 bits (61), Expect(2) = 2.1
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = -3

Query: 541  PGMKALDMNTAE-------DAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMIS 386
            PG KA+DM   E        A+V+  +E +P  +  GME+A     P M P  G  +++
Sbjct: 5338 PG-KAMDMQLDEMDRMSMIAAVVQQQQEHLPPALPAGMELASQQAPPAMAPPPGDSLVT 5395



 Score = 21.6 bits (44), Expect(2) = 2.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 581  GQAAPGHRHDPGGARD 534
            G   PG  H PG A D
Sbjct: 5328 GSVQPGSHHHPGKAMD 5343

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>ARNB_PSEU2 (Q4ZSZ4) UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate|
           aminotransferase (EC 2.6.1.-)
           (UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate)
           aminotransferase) (UDP-Ara4O aminotransferase)
           (Polymyxin resistance protein pmrH)
          Length = 382

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -3

Query: 508 EDAIVRLTREVVPGMIVTGMEVAEIDG--APRMGPTFGAMMISGQKAAHLALKALG 347
           ++ I  +TR +  G I TG E  +++   A R+G      + S   A H+AL ALG
Sbjct: 15  DEEIAAVTRVLRSGWITTGPECQKLEEEFAARVGARHAVALSSATGAMHVALLALG 70

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>RPOB_BORGA (Q661M9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1155

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = -3

Query: 508  EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMM-ISGQKAAHLALKALGRPNGI 332
            E+ I+R+   V PG I+ G    + +G   + P F  +  I G+KA  +   +L  P+G 
Sbjct: 816  ENGIIRIGTYVKPGDILVGKVTPKSEGD--ITPEFRLLTSIFGEKAKDVKNNSLKVPHGT 873

Query: 331  DGTLKNV 311
            +GT+ +V
Sbjct: 874  EGTVIDV 880

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>RPOB_BORBU (Q59191) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1155

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = -3

Query: 508  EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMM-ISGQKAAHLALKALGRPNGI 332
            E+ I+R+   V PG I+ G    + +G   + P F  +  I G+KA  +   +L  P+G 
Sbjct: 816  ENGIIRIGTYVKPGDILVGKVTPKSEGD--ITPEFRLLTSIFGEKAKDVKNNSLKVPHGT 873

Query: 331  DGTLKNV 311
            +GT+ +V
Sbjct: 874  EGTVIDV 880

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>PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain-containing|
            protein 2) (Activated in prostate cancer protein)
          Length = 2839

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +2

Query: 401  AEGRAHSRGTVDLGDLHAGDNHARDDLAGEAHDGVLGRVHVKRLH 535
            ++G A   GT++ GD     N A   LAG AH  VL  +H  +LH
Sbjct: 2655 SQGAASQEGTMNRGDFLLSVNGA--SLAGLAHGNVLKVLHQAQLH 2697

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>YWS4_CAEEL (Q10940) Hypothetical protein B0310.4|
          Length = 112

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
 Frame = +2

Query: 386 GDHHGAE---GRAHSRGTVDLGDLHAGDNHARDDLAGEAHDGVL--GRVHVKRLHPG 541
           G+ H  E   G  H RG    G+ H G+ H  +   GE H G    G+ H    H G
Sbjct: 18  GETHRGETHRGETH-RGKTHRGETHRGETHRGETHRGETHRGETHRGKTHRGETHRG 73

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>YNTC_AZOCA (Q04855) Hypothetical 80.5 kDa protein in ntrC 5'region (ORF1)|
          Length = 735

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 461 NHARDDLAGEAHDGVLGRVHVKRLHPGHRLD 553
           NHA + + G   +GV+GR   + + P H +D
Sbjct: 213 NHAAEAIFGHTREGVIGRPMTETIIPAHYID 243

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>COBQ_MYCTU (P0A532) Cobyric acid synthase|
          Length = 494

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
 Frame = -3

Query: 559 GMIQAVPGMKALDMNTA--EDAIVRLTR-----------EVVPGMIVTGMEVAEIDGAPR 419
           G +  V G+  LD+ TA     ++RL R           E+  G I  G    E  G  R
Sbjct: 355 GQVTEVEGLGLLDVETAFSPHKVLRLPRGEGLGVPASGYEIHHGRITRGDTAEEFLGGAR 414

Query: 418 MGPTFGAM 395
            GP FG M
Sbjct: 415 DGPVFGTM 422

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>COBQ_MYCBO (P0A533) Cobyric acid synthase|
          Length = 494

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
 Frame = -3

Query: 559 GMIQAVPGMKALDMNTA--EDAIVRLTR-----------EVVPGMIVTGMEVAEIDGAPR 419
           G +  V G+  LD+ TA     ++RL R           E+  G I  G    E  G  R
Sbjct: 355 GQVTEVEGLGLLDVETAFSPHKVLRLPRGEGLGVPASGYEIHHGRITRGDTAEEFLGGAR 414

Query: 418 MGPTFGAM 395
            GP FG M
Sbjct: 415 DGPVFGTM 422

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>PRIM_SYNP7 (P74893) DNA primase (EC 2.7.7.-)|
          Length = 694

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -3

Query: 310 TPALHPEMILAATNNADIVD 251
           TP LHPE I A    ADIVD
Sbjct: 3   TPRLHPETIAAVKERADIVD 22

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>EMRB_HAEIN (P44927) Multidrug resistance protein B homolog|
          Length = 510

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 249 ASTMSALLVAARIISGCSAG-VTFLSVPSMPFGRPRALSARCAAFWP-EIIMAPKVGPIL 422
           A ++ AL++  R+I G  AG V  LS   +    P        AFW   I++AP  GPIL
Sbjct: 103 ADSLEALIIF-RVIQGAVAGPVIPLSQSLLLNNYPPEKRGMALAFWSMTIVVAPIFGPIL 161

Query: 423 G 425
           G
Sbjct: 162 G 162

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>WNT6_HUMAN (Q9Y6F9) Protein Wnt-6 precursor|
          Length = 365

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 514 CSCQAPSSRAPPGSCRCPGAA*P 582
           C CQAP  RAPP     PG   P
Sbjct: 132 CGCQAPRGRAPPRPSGLPGTPGP 154

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>ENV_EIAV5 (P22430) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP90; Coat protein GP45]
          Length = 860

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%)
 Frame = +3

Query: 18  CYRRTH------HPWXLTWGRAEQST 77
           C  RTH      HPW ++WG   +ST
Sbjct: 536 CIERTHVFCHTGHPWNMSWGHLNEST 561

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>RPOB_GEOSL (Q748Y6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1370

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -3

Query: 508  EDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMM-ISGQKAAHLALKALGRPNGI 332
            E  I+R+  EV PG I+ G    +  G  ++ P    +  I G+KA  +   +L  P G+
Sbjct: 875  ESGIIRIGAEVKPGDILVGKITPK--GETQLSPEEKLLRAIFGEKAGDVRDTSLRVPPGV 932

Query: 331  DGTL 320
            +GT+
Sbjct: 933  EGTV 936

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>ENV_EIAVY (P06751) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP90; Coat protein GP45]
          Length = 859

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%)
 Frame = +3

Query: 18  CYRRTH------HPWXLTWGRAEQST 77
           C  RTH      HPW ++WG   +ST
Sbjct: 535 CIERTHVFCHTGHPWNMSWGHLNEST 560

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>ENV_EIAVW (P16082) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP90; Coat protein GP45]
          Length = 859

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%)
 Frame = +3

Query: 18  CYRRTH------HPWXLTWGRAEQST 77
           C  RTH      HPW ++WG   +ST
Sbjct: 535 CIERTHVFCHTGHPWNMSWGHLNEST 560

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>ENV_EIAVC (P32541) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP90; Coat protein GP45]
          Length = 859

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%)
 Frame = +3

Query: 18  CYRRTH------HPWXLTWGRAEQST 77
           C  RTH      HPW ++WG   +ST
Sbjct: 535 CIERTHVFCHTGHPWNMSWGHLNEST 560

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>ENV_EIAV9 (P11306) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP90; Coat protein GP45]
          Length = 859

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%)
 Frame = +3

Query: 18  CYRRTH------HPWXLTWGRAEQST 77
           C  RTH      HPW ++WG   +ST
Sbjct: 535 CIERTHVFCHTGHPWNMSWGHLNEST 560

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>ENV_EIAV3 (P22429) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP90; Coat protein GP45]
          Length = 859

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%)
 Frame = +3

Query: 18  CYRRTH------HPWXLTWGRAEQST 77
           C  RTH      HPW ++WG   +ST
Sbjct: 535 CIERTHVFCHTGHPWNMSWGHLNEST 560

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>ENV_EIAV2 (P22428) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP90; Coat protein GP45]
          Length = 859

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%)
 Frame = +3

Query: 18  CYRRTH------HPWXLTWGRAEQST 77
           C  RTH      HPW ++WG   +ST
Sbjct: 535 CIERTHVFCHTGHPWNMSWGHLNEST 560

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>ENV_EIAV1 (P22427) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP90; Coat protein GP45]
          Length = 859

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 6/26 (23%)
 Frame = +3

Query: 18  CYRRTH------HPWXLTWGRAEQST 77
           C  RTH      HPW ++WG   +ST
Sbjct: 535 CIERTHVFCHTGHPWNMSWGHLNEST 560


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,288,642
Number of Sequences: 219361
Number of extensions: 1363692
Number of successful extensions: 4618
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 4419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4603
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result