Clone Name | rbah61h23 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_472804.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1182 Score = 389 bits (196), Expect = e-105 Identities = 397/464 (85%) Strand = Plus / Minus Query: 220 actcacgggtgagatgtctttaccaaaaagcccagcgattgctttcccaggatcgtcctg 279 |||||| |||||||||||||| || |||||||||||||||||||| |||||||| ||||| Sbjct: 1173 actcacaggtgagatgtctttgccgaaaagcccagcgattgctttgccaggatcctcctg 1114 Query: 280 cttgatgagggattccccgacaagaatcgctttgaccccggcatcctgaacgaacgaaac 339 ||||||||| || ||||| || |||| ||||| ||||| |||| ||||||||| |||| Sbjct: 1113 cttgatgagagactccccaacgagaacagctttaaccccagcattctgaacgaatgaaat 1054 Query: 340 atggtcaggcgtaaacagtccagattcgcctacgacaattatgtccttttgggctataag 399 |||||| || || ||||| || ||||| ||||| ||||||||| | || || |||||| Sbjct: 1053 atggtctggtgtgaacagccctgattcccctacaacaattatgcctttctgagctatagt 994 Query: 400 ttgtccccgttcaccctccagaagctttttggtgtttgagatgtcaacttcgaaagtttc 459 |||||| | ||||||||| ||||| ||||| |||||||| || ||||||| ||||| || Sbjct: 993 ttgtcctctttcaccctcaagaagatttttagtgtttgaaatatcaacttgaaaagtctc 934 Query: 460 aagattacgattattgatgccaataagctgaatgccatctatccctataacacggtcgat 519 || ||||| ||||||||||| || ||||| | ||||||||||||| |||||||| || Sbjct: 933 gaggttacggttattgatgccgatgagctggacaccatctatccctaacacacggtccat 874 Query: 520 ttccctttcatcatgcacctcaactaaagctgccatcccgagtattttgcatattttcag 579 |||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| Sbjct: 873 ttccctttcatcatgcacctcaactaaagcagccatgccaagtattttgcatattttcaa 814 Query: 580 catataactgatatcacgatcaggtaagatggcagcaatcagaagaacagcatctgctcc 639 |||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 813 catatacttgatatcaagatcaggtaagacagcagcaatcagaagaacagcatctgctcc 754 Query: 640 cttagaccgtgcatagtaaagctgccaagcatcaatgatgaact 683 ||| | || ||||||||||| ||||| ||||||| ||||||| Sbjct: 753 cttcaaacgcgcatagtaaagttgccaggcatcaacaatgaact 710
>dbj|AK101835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069C16, full insert sequence Length = 974 Score = 389 bits (196), Expect = e-105 Identities = 397/464 (85%) Strand = Plus / Minus Query: 220 actcacgggtgagatgtctttaccaaaaagcccagcgattgctttcccaggatcgtcctg 279 |||||| |||||||||||||| || |||||||||||||||||||| |||||||| ||||| Sbjct: 734 actcacaggtgagatgtctttgccgaaaagcccagcgattgctttgccaggatcctcctg 675 Query: 280 cttgatgagggattccccgacaagaatcgctttgaccccggcatcctgaacgaacgaaac 339 ||||||||| || ||||| || |||| ||||| ||||| |||| ||||||||| |||| Sbjct: 674 cttgatgagagactccccaacgagaacagctttaaccccagcattctgaacgaatgaaat 615 Query: 340 atggtcaggcgtaaacagtccagattcgcctacgacaattatgtccttttgggctataag 399 |||||| || || ||||| || ||||| ||||| ||||||||| | || || |||||| Sbjct: 614 atggtctggtgtgaacagccctgattcccctacaacaattatgcctttctgagctatagt 555 Query: 400 ttgtccccgttcaccctccagaagctttttggtgtttgagatgtcaacttcgaaagtttc 459 |||||| | ||||||||| ||||| ||||| |||||||| || ||||||| ||||| || Sbjct: 554 ttgtcctctttcaccctcaagaagatttttagtgtttgaaatatcaacttgaaaagtctc 495 Query: 460 aagattacgattattgatgccaataagctgaatgccatctatccctataacacggtcgat 519 || ||||| ||||||||||| || ||||| | ||||||||||||| |||||||| || Sbjct: 494 gaggttacggttattgatgccgatgagctggacaccatctatccctaacacacggtccat 435 Query: 520 ttccctttcatcatgcacctcaactaaagctgccatcccgagtattttgcatattttcag 579 |||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| Sbjct: 434 ttccctttcatcatgcacctcaactaaagcagccatgccaagtattttgcatattttcaa 375 Query: 580 catataactgatatcacgatcaggtaagatggcagcaatcagaagaacagcatctgctcc 639 |||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 374 catatacttgatatcaagatcaggtaagacagcagcaatcagaagaacagcatctgctcc 315 Query: 640 cttagaccgtgcatagtaaagctgccaagcatcaatgatgaact 683 ||| | || ||||||||||| ||||| ||||||| ||||||| Sbjct: 314 cttcaaacgcgcatagtaaagttgccaggcatcaacaatgaact 271
>gb|BT017430.1| Zea mays clone EL01N0403D03.c mRNA sequence Length = 1119 Score = 369 bits (186), Expect = 8e-99 Identities = 387/454 (85%) Strand = Plus / Plus Query: 230 gagatgtctttaccaaaaagcccagcgattgctttcccaggatcgtcctgcttgatgagg 289 ||||| ||||| || ||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 332 gagatatctttgccgaaaagcccagcgattgctttccctggatcctcctgcttgatgagg 391 Query: 290 gattccccgacaagaatcgctttgaccccggcatcctgaacgaacgaaacatggtcaggc 349 ||||||||||| |||| ||||||||| || || | ||||||||||||| || |||| Sbjct: 392 gattccccgacgagaaccgctttgactccagcgttttgaacgaacgaaatatcaccagga 451 Query: 350 gtaaacagtccagattcgcctacgacaattatgtccttttgggctataagttgtccccgt 409 || ||||| ||||||| ||||| ||||||| |||||||| ||||||| ||||| ||| Sbjct: 452 gtgaacagcgcagattctcctacaacaattacatccttttgagctataacctgtcctcgt 511 Query: 410 tcaccctccagaagctttttggtgtttgagatgtcaacttcgaaagtttcaagattacga 469 ||||| |||||||||||||| ||||||| || |||||||| || || || |||||||| Sbjct: 512 tcaccttccagaagcttttttgtgtttggaatatcaacttcaaatgtctcgagattacgg 571 Query: 470 ttattgatgccaataagctgaatgccatctatccctataacacggtcgatttccctttca 529 ||||||||||| || ||||| | ||||| ||||||| ||||||||| ||||| ||||| Sbjct: 572 ttattgatgccgatgagctgtacaccatcaatccctaaaacacggtccatttctctttcg 631 Query: 530 tcatgcacctcaactaaagctgccatcccgagtattttgcatattttcagcatataactg 589 ||||| |||||||||||||| |||||||| ||||||||||| ||||||| ||| || || Sbjct: 632 tcatgaacctcaactaaagcagccatcccaagtattttgcaaattttcaacatgtatttg 691 Query: 590 atatcacgatcaggtaagatggcagcaatcagaagaacagcatctgctcccttagaccgt 649 ||||| || |||||||| | ||||| || ||||||||||||||||| ||||| |||||| Sbjct: 692 atatcgcggtcaggtaatacagcagctattagaagaacagcatctgcacccttggaccgt 751 Query: 650 gcatagtaaagctgccaagcatcaatgatgaact 683 ||||||||||| |||||||||||||| ||||||| Sbjct: 752 gcatagtaaagttgccaagcatcaataatgaact 785
>gb|AY110654.1| Zea mays CL6_1 mRNA sequence Length = 798 Score = 349 bits (176), Expect = 8e-93 Identities = 383/454 (84%) Strand = Plus / Plus Query: 230 gagatgtctttaccaaaaagcccagcgattgctttcccaggatcgtcctgcttgatgagg 289 ||||| ||||| || ||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 307 gagatatctttgccgaaaagcccagcgattgctttccctggatcctcctgcttgatgagg 366 Query: 290 gattccccgacaagaatcgctttgaccccggcatcctgaacgaacgaaacatggtcaggc 349 ||||||||||| |||| |||||||||||| || | ||||||||||||| || |||| Sbjct: 367 gattccccgacgagaaccgctttgaccccagcgttttgaacgaacgaaatatcaccagga 426 Query: 350 gtaaacagtccagattcgcctacgacaattatgtccttttgggctataagttgtccccgt 409 || ||||| ||||||| ||||| ||||||| |||||||| ||||||| ||||| ||| Sbjct: 427 gtgaacagcgcagattctcctacaacaattacatccttttgagctataacctgtcctcgt 486 Query: 410 tcaccctccagaagctttttggtgtttgagatgtcaacttcgaaagtttcaagattacga 469 ||||| ||||||||| ||||||| || |||||||| || || || |||||||| Sbjct: 487 tcaccttccagaagcnnnnnngtgtttgtaatatcaacttcaaatgtctcgagattacgg 546 Query: 470 ttattgatgccaataagctgaatgccatctatccctataacacggtcgatttccctttca 529 ||||||||||| || ||||| | ||||| ||||||| ||||||||| ||||| ||||| Sbjct: 547 ttattgatgccgatgagctgtacaccatcaatccctaaaacacggtccatttctctttcg 606 Query: 530 tcatgcacctcaactaaagctgccatcccgagtattttgcatattttcagcatataactg 589 ||||| |||||||||||||| |||||||| ||||||||||| ||||||| ||| || || Sbjct: 607 tcatgaacctcaactaaagcagccatcccaagtattttgcaaattttcaacatgtatttg 666 Query: 590 atatcacgatcaggtaagatggcagcaatcagaagaacagcatctgctcccttagaccgt 649 ||||| || |||||||| | ||||| || ||||||||||||||||| ||||| |||||| Sbjct: 667 atatcgcggtcaggtaatacagcagctattagaagaacagcatctgcacccttggaccgt 726 Query: 650 gcatagtaaagctgccaagcatcaatgatgaact 683 ||||||||||| |||||||||||||| ||||||| Sbjct: 727 gcatagtaaagttgccaagcatcaataatgaact 760
>emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016O02, complete sequence Length = 167988 Score = 159 bits (80), Expect = 1e-35 Identities = 131/148 (88%) Strand = Plus / Plus Query: 536 acctcaactaaagctgccatcccgagtattttgcatattttcagcatataactgatatca 595 |||||||||||||| ||||| || ||||||||||||||||||| |||||| |||||||| Sbjct: 56275 acctcaactaaagcagccatgccaagtattttgcatattttcaacatatacttgatatca 56334 Query: 596 cgatcaggtaagatggcagcaatcagaagaacagcatctgctcccttagaccgtgcatag 655 |||||||||||| |||||||||||||||||||||||||||||||| | || |||||| Sbjct: 56335 agatcaggtaagacagcagcaatcagaagaacagcatctgctcccttcaaacgcgcatag 56394 Query: 656 taaagctgccaagcatcaatgatgaact 683 ||||| ||||| ||||||| ||||||| Sbjct: 56395 taaagttgccaggcatcaacaatgaact 56422 Score = 99.6 bits (50), Expect = 1e-17 Identities = 71/78 (91%) Strand = Plus / Plus Query: 220 actcacgggtgagatgtctttaccaaaaagcccagcgattgctttcccaggatcgtcctg 279 |||||| |||||||||||||| || |||||||||||||||||||| |||||||| ||||| Sbjct: 55131 actcacaggtgagatgtctttgccgaaaagcccagcgattgctttgccaggatcctcctg 55190 Query: 280 cttgatgagggattcccc 297 ||||||||| || ||||| Sbjct: 55191 cttgatgagagactcccc 55208 Score = 79.8 bits (40), Expect = 1e-11 Identities = 67/76 (88%) Strand = Plus / Plus Query: 464 ttacgattattgatgccaataagctgaatgccatctatccctataacacggtcgatttcc 523 ||||| ||||||||||| || ||||| | ||||||||||||| |||||||| |||||| Sbjct: 56020 ttacggttattgatgccgatgagctggacaccatctatccctaacacacggtccatttcc 56079 Query: 524 ctttcatcatgcacct 539 |||||||||||||||| Sbjct: 56080 ctttcatcatgcacct 56095
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 159 bits (80), Expect = 1e-35 Identities = 131/148 (88%) Strand = Plus / Plus Query: 536 acctcaactaaagctgccatcccgagtattttgcatattttcagcatataactgatatca 595 |||||||||||||| ||||| || ||||||||||||||||||| |||||| |||||||| Sbjct: 23338954 acctcaactaaagcagccatgccaagtattttgcatattttcaacatatacttgatatca 23339013 Query: 596 cgatcaggtaagatggcagcaatcagaagaacagcatctgctcccttagaccgtgcatag 655 |||||||||||| |||||||||||||||||||||||||||||||| | || |||||| Sbjct: 23339014 agatcaggtaagacagcagcaatcagaagaacagcatctgctcccttcaaacgcgcatag 23339073 Query: 656 taaagctgccaagcatcaatgatgaact 683 ||||| ||||| ||||||| ||||||| Sbjct: 23339074 taaagttgccaggcatcaacaatgaact 23339101 Score = 99.6 bits (50), Expect = 1e-17 Identities = 71/78 (91%) Strand = Plus / Plus Query: 220 actcacgggtgagatgtctttaccaaaaagcccagcgattgctttcccaggatcgtcctg 279 |||||| |||||||||||||| || |||||||||||||||||||| |||||||| ||||| Sbjct: 23337810 actcacaggtgagatgtctttgccgaaaagcccagcgattgctttgccaggatcctcctg 23337869 Query: 280 cttgatgagggattcccc 297 ||||||||| || ||||| Sbjct: 23337870 cttgatgagagactcccc 23337887 Score = 79.8 bits (40), Expect = 1e-11 Identities = 67/76 (88%) Strand = Plus / Plus Query: 464 ttacgattattgatgccaataagctgaatgccatctatccctataacacggtcgatttcc 523 ||||| ||||||||||| || ||||| | ||||||||||||| |||||||| |||||| Sbjct: 23338699 ttacggttattgatgccgatgagctggacaccatctatccctaacacacggtccatttcc 23338758 Query: 524 ctttcatcatgcacct 539 |||||||||||||||| Sbjct: 23338759 ctttcatcatgcacct 23338774
>emb|CR938710.1| Medicago truncatula chromosome 5 clone mth2-170k9, COMPLETE SEQUENCE Length = 123977 Score = 67.9 bits (34), Expect = 4e-08 Identities = 79/94 (84%) Strand = Plus / Minus Query: 588 tgatatcacgatcaggtaagatggcagcaatcagaagaacagcatctgctcccttagacc 647 |||| ||| |||||||||| | |||||||| ||||| || |||||||| || || || | Sbjct: 41443 tgatgtcaagatcaggtaaaacagcagcaattagaagcactgcatctgcacctttcgatc 41384 Query: 648 gtgcatagtaaagctgccaagcatcaatgatgaa 681 | |||||||| |||||||||||||| |||||||| Sbjct: 41383 gagcatagtagagctgccaagcatctatgatgaa 41350 Score = 58.0 bits (29), Expect = 4e-05 Identities = 68/81 (83%) Strand = Plus / Minus Query: 459 caagattacgattattgatgccaataagctgaatgccatctatccctataacacggtcga 518 |||||||||| || |||||||||||||||| || ||| ||||| || | |||||| |||| Sbjct: 42003 caagattacggttgttgatgccaataagctcaacgccctctattccaagaacacgatcga 41944 Query: 519 tttccctttcatcatgcacct 539 |||| | ||||| ||||||| Sbjct: 41943 attccatctcatcgtgcacct 41923
>ref|XM_450324.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1270 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 470 ttattgatgccaataagctgaatgccatctat 501 ||||||||||| |||||||||| ||||||||| Sbjct: 954 ttattgatgccgataagctgaacgccatctat 923
>ref|XM_450323.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1419 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 470 ttattgatgccaataagctgaatgccatctat 501 ||||||||||| |||||||||| ||||||||| Sbjct: 955 ttattgatgccgataagctgaacgccatctat 924
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Plus Query: 470 ttattgatgccaataagctgaatgccatctat 501 ||||||||||| |||||||||| ||||||||| Sbjct: 4148276 ttattgatgccgataagctgaacgccatctat 4148307
>dbj|AP005738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0066C12 Length = 168874 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Plus Query: 470 ttattgatgccaataagctgaatgccatctat 501 ||||||||||| |||||||||| ||||||||| Sbjct: 131757 ttattgatgccgataagctgaacgccatctat 131788
>dbj|AK071383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092E01, full insert sequence Length = 1420 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 470 ttattgatgccaataagctgaatgccatctat 501 ||||||||||| |||||||||| ||||||||| Sbjct: 955 ttattgatgccgataagctgaacgccatctat 924
>dbj|AK059358.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-D08, full insert sequence Length = 1270 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 470 ttattgatgccaataagctgaatgccatctat 501 ||||||||||| |||||||||| ||||||||| Sbjct: 954 ttattgatgccgataagctgaacgccatctat 923
>ref|NM_124197.2| Arabidopsis thaliana indole-3-glycerol-phosphate synthase AT5G48220 mRNA, complete cds Length = 1413 Score = 44.1 bits (22), Expect = 0.60 Identities = 31/34 (91%) Strand = Plus / Minus Query: 455 gtttcaagattacgattattgatgccaataagct 488 |||||||| ||||| |||||||||||||| |||| Sbjct: 993 gtttcaaggttacggttattgatgccaatgagct 960
>ref|NM_126473.2| Arabidopsis thaliana indole-3-glycerol-phosphate synthase AT2G04400 mRNA, complete cds Length = 1721 Score = 44.1 bits (22), Expect = 0.60 Identities = 43/50 (86%) Strand = Plus / Minus Query: 439 gatgtcaacttcgaaagtttcaagattacgattattgatgccaataagct 488 |||||| ||||| || ||||||||| | || ||||||||||||| ||||| Sbjct: 1036 gatgtccacttcaaatgtttcaagacttcggttattgatgccaacaagct 987
>ref|XM_481579.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1200 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 470 ttattgatgccaataagctgaa 491 |||||||||||||||||||||| Sbjct: 956 ttattgatgccaataagctgaa 935
>gb|BT009598.1| Triticum aestivum clone wre1n.pk0075.b10:fis, full insert mRNA sequence Length = 1005 Score = 44.1 bits (22), Expect = 0.60 Identities = 31/34 (91%) Strand = Plus / Minus Query: 458 tcaagattacgattattgatgccaataagctgaa 491 |||||| |||| || ||||||||||||||||||| Sbjct: 578 tcaagactacggttgttgatgccaataagctgaa 545
>gb|BT009207.1| Triticum aestivum clone wle1n.pk0039.d2:fis, full insert mRNA sequence Length = 926 Score = 44.1 bits (22), Expect = 0.60 Identities = 31/34 (91%) Strand = Plus / Minus Query: 458 tcaagattacgattattgatgccaataagctgaa 491 |||||| |||| || ||||||||||||||||||| Sbjct: 258 tcaagactacggttgttgatgccaataagctgaa 225
>gb|AY060498.1| Arabidopsis thaliana AT5g48220/MIF21_11 mRNA, complete cds Length = 1140 Score = 44.1 bits (22), Expect = 0.60 Identities = 31/34 (91%) Strand = Plus / Minus Query: 455 gtttcaagattacgattattgatgccaataagct 488 |||||||| ||||| |||||||||||||| |||| Sbjct: 908 gtttcaaggttacggttattgatgccaatgagct 875
>gb|AY052223.1| Arabidopsis thaliana AT5g48220/MIF21_11 mRNA, complete cds Length = 1358 Score = 44.1 bits (22), Expect = 0.60 Identities = 31/34 (91%) Strand = Plus / Minus Query: 455 gtttcaagattacgattattgatgccaataagct 488 |||||||| ||||| |||||||||||||| |||| Sbjct: 941 gtttcaaggttacggttattgatgccaatgagct 908
>gb|AY050327.1| Arabidopsis thaliana AT5g48220/MIF21_11 mRNA, complete cds Length = 1407 Score = 44.1 bits (22), Expect = 0.60 Identities = 31/34 (91%) Strand = Plus / Minus Query: 455 gtttcaagattacgattattgatgccaataagct 488 |||||||| ||||| |||||||||||||| |||| Sbjct: 993 gtttcaaggttacggttattgatgccaatgagct 960
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 470 ttattgatgccaataagctgaa 491 |||||||||||||||||||||| Sbjct: 13949391 ttattgatgccaataagctgaa 13949370
>emb|BX820386.1|CNS0A8MY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH28ZG04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1359 Score = 44.1 bits (22), Expect = 0.60 Identities = 43/50 (86%) Strand = Plus / Minus Query: 439 gatgtcaacttcgaaagtttcaagattacgattattgatgccaataagct 488 |||||| ||||| || ||||||||| | || ||||||||||||| ||||| Sbjct: 1027 gatgtccacttcaaatgtttcaagacttcggttattgatgccaacaagct 978
>emb|BX819822.1|CNS0A8JB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS31ZF12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1346 Score = 44.1 bits (22), Expect = 0.60 Identities = 43/50 (86%) Strand = Plus / Minus Query: 439 gatgtcaacttcgaaagtttcaagattacgattattgatgccaataagct 488 |||||| ||||| || ||||||||| | || ||||||||||||| ||||| Sbjct: 982 gatgtccacttcaaatgtttcaagacttcggttattgatgccaacaagct 933
>emb|BX833681.1|CNS0A1R5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL70ZC05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 700 Score = 44.1 bits (22), Expect = 0.60 Identities = 31/34 (91%) Strand = Plus / Minus Query: 455 gtttcaagattacgattattgatgccaataagct 488 |||||||| ||||| |||||||||||||| |||| Sbjct: 283 gtttcaaggttacggttattgatgccaatgagct 250
>emb|BX830453.1|CNS0A060 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB82ZE09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1306 Score = 44.1 bits (22), Expect = 0.60 Identities = 31/34 (91%) Strand = Plus / Minus Query: 455 gtttcaagattacgattattgatgccaataagct 488 |||||||| ||||| |||||||||||||| |||| Sbjct: 928 gtttcaaggttacggttattgatgccaatgagct 895
>emb|BX832169.1|CNS09ZME Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH56ZC05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1321 Score = 44.1 bits (22), Expect = 0.60 Identities = 31/34 (91%) Strand = Plus / Minus Query: 455 gtttcaagattacgattattgatgccaataagct 488 |||||||| ||||| |||||||||||||| |||| Sbjct: 946 gtttcaaggttacggttattgatgccaatgagct 913
>gb|AY086973.1| Arabidopsis thaliana clone 3006 mRNA, complete sequence Length = 1379 Score = 44.1 bits (22), Expect = 0.60 Identities = 43/50 (86%) Strand = Plus / Minus Query: 439 gatgtcaacttcgaaagtttcaagattacgattattgatgccaataagct 488 |||||| ||||| || ||||||||| | || ||||||||||||| ||||| Sbjct: 1041 gatgtccacttcaaatgtttcaagacttcggttattgatgccaacaagct 992
>dbj|AP004554.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0005C02 Length = 62423 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 470 ttattgatgccaataagctgaa 491 |||||||||||||||||||||| Sbjct: 3714 ttattgatgccaataagctgaa 3693
>dbj|AK117503.1| Arabidopsis thaliana At2g04400 mRNA for putative indole-3-glycerol phosphate synthase, complete cds, clone: RAFL17-14-C09 Length = 1106 Score = 44.1 bits (22), Expect = 0.60 Identities = 43/50 (86%) Strand = Plus / Minus Query: 439 gatgtcaacttcgaaagtttcaagattacgattattgatgccaataagct 488 |||||| ||||| || ||||||||| | || ||||||||||||| ||||| Sbjct: 728 gatgtccacttcaaatgtttcaagacttcggttattgatgccaacaagct 679
>dbj|AP005485.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1136_D12 Length = 105521 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 470 ttattgatgccaataagctgaa 491 |||||||||||||||||||||| Sbjct: 93786 ttattgatgccaataagctgaa 93765
>gb|U18770.1|ATU18770 Arabidopsis thaliana indole-3-glycerol phosphate synthase mRNA, complete cds Length = 1362 Score = 44.1 bits (22), Expect = 0.60 Identities = 43/50 (86%) Strand = Plus / Minus Query: 439 gatgtcaacttcgaaagtttcaagattacgattattgatgccaataagct 488 |||||| ||||| || ||||||||| | || ||||||||||||| ||||| Sbjct: 978 gatgtccacttcaaatgtttcaagacttcggttattgatgccaacaagct 929
>gb|AC159205.2| Mus musculus BAC clone RP23-233O17 from chromosome 13, complete sequence Length = 202409 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 476 atgccaataagctgaatgcca 496 ||||||||||||||||||||| Sbjct: 114022 atgccaataagctgaatgcca 114002
>gb|AC160469.5| Mus musculus chromosome 5, clone RP23-318I19, complete sequence Length = 221860 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 actggccaggtaaacaaaac 111 |||||||||||||||||||| Sbjct: 13131 actggccaggtaaacaaaac 13112
>emb|AL513550.9| Human DNA sequence from clone RP11-98I9 on chromosome 6 Contains the gene for hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor (COQ3), the gene for SR rich protein (FLJ14992), the USP45 gene for ubiquitin specific protease 45, the 3' end of the gene for a novel protein similar to ubiquitin carboxyl-terminal hydrolase 16 (EC 3.1.2.15) and 2 CpG islands, complete sequence Length = 127905 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 tccttaccctttcttctatt 208 |||||||||||||||||||| Sbjct: 110395 tccttaccctttcttctatt 110414
>gb|AF052022.1| Kadipiro virus JKT-7075 segment 8 Vp8 gene, complete cds Length = 1114 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 523 cctttcatcatgcacctcaa 542 |||||||||||||||||||| Sbjct: 320 cctttcatcatgcacctcaa 301
>gb|AC044840.9| Homo sapiens chromosome , clone RP11-30L3, complete sequence Length = 179834 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tcttaattgcatcctttgaa 38 |||||||||||||||||||| Sbjct: 132727 tcttaattgcatcctttgaa 132708
>gb|AC181983.2| Gallus gallus BAC clone CH261-63A17 from chromosome ul, complete sequence Length = 161905 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 accaaaactctccaaaagcgcata 140 ||||||||||||||||||| |||| Sbjct: 30505 accaaaactctccaaaagcacata 30528
>gb|AC084758.3| Homo sapiens chromosome 15 clone RP11-348A14 map 15q21.1, complete sequence Length = 192074 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 aattgcatcctttgaataaa 42 |||||||||||||||||||| Sbjct: 191842 aattgcatcctttgaataaa 191823
>gb|AC016866.12| Homo sapiens chromosome 18, clone RP11-15F12, complete sequence Length = 171112 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 tcttaattgcatcctttgaa 38 |||||||||||||||||||| Sbjct: 167585 tcttaattgcatcctttgaa 167604
>emb|BX248509.4| Zebrafish DNA sequence from clone CH211-113O22, complete sequence Length = 61707 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 ctgttttttctatacaaaat 165 |||||||||||||||||||| Sbjct: 50516 ctgttttttctatacaaaat 50535
>gb|AC022467.7|AC022467 Homo sapiens chromosome 15 clone CTD-3247H4 map 15q21, complete sequence Length = 193703 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 aattgcatcctttgaataaa 42 |||||||||||||||||||| Sbjct: 12726 aattgcatcctttgaataaa 12707
>gb|AC021087.5| Homo sapiens chromosome 5 clone CTD-2083E4, complete sequence Length = 156677 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 617 atcagaagaacagcatctgc 636 |||||||||||||||||||| Sbjct: 8426 atcagaagaacagcatctgc 8407
>dbj|BS000111.1| Pan troglodytes chromosome 22 clone:PTB-093K04, map 22, complete sequences Length = 184428 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 tcctgcttgatgagggattc 294 |||||||||||||||||||| Sbjct: 149430 tcctgcttgatgagggattc 149449
>gb|M17188.1|HEFIGCHE1 Heterodontus francisci C-region H-chain immunoglobulin mRNA, partial cds Length = 315 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 cttccaggaaacagtggtga 76 |||||||||||||||||||| Sbjct: 129 cttccaggaaacagtggtga 110
>dbj|AB066503.1| Schizophyllum commune ScGP-A gene for heterotrimeric G protein alpha subunit A, complete cds Length = 2142 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 485 agctgaatgccatctatccc 504 |||||||||||||||||||| Sbjct: 891 agctgaatgccatctatccc 910
>emb|AL935180.9| Zebrafish DNA sequence from clone CH211-227I1, complete sequence Length = 159007 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 ctgttttttctatacaaaat 165 |||||||||||||||||||| Sbjct: 145724 ctgttttttctatacaaaat 145705
>gb|AC108828.17| Mus musculus chromosome 5, clone RP23-153H17, complete sequence Length = 218103 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 actggccaggtaaacaaaac 111 |||||||||||||||||||| Sbjct: 39759 actggccaggtaaacaaaac 39778
>dbj|AP001710.1| Homo sapiens genomic DNA, chromosome 21q, section 54/105 Length = 340000 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 tcctgcttgatgagggattc 294 |||||||||||||||||||| Sbjct: 311728 tcctgcttgatgagggattc 311747
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 9.3 Identities = 35/40 (87%) Strand = Plus / Minus Query: 446 acttcgaaagtttcaagattacgattattgatgccaataa 485 |||||||| |||| | |||||||||||| |||||||||| Sbjct: 1211370 acttcgaacgtttttaaattacgattattaatgccaataa 1211331
>gb|AC091815.7| Homo sapiens 12p BAC RP11-319K17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169246 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 agatgtctttaccaaaaagcccag 254 ||||||||||||||| |||||||| Sbjct: 131057 agatgtctttaccaataagcccag 131080
>dbj|AP000248.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone:P289H18, complete sequence Length = 146847 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 tcctgcttgatgagggattc 294 |||||||||||||||||||| Sbjct: 54812 tcctgcttgatgagggattc 54831
>dbj|AP000209.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone f43D11-119B8, segment 7/12, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 tcctgcttgatgagggattc 294 |||||||||||||||||||| Sbjct: 85716 tcctgcttgatgagggattc 85735 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,674,634 Number of Sequences: 3902068 Number of extensions: 5674634 Number of successful extensions: 102969 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102752 Number of HSP's gapped (non-prelim): 217 length of query: 683 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 660 effective length of database: 17,143,297,704 effective search space: 11314576484640 effective search space used: 11314576484640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)