ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61h23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472804.1| Oryza sativa (japonica cultivar-group), predic... 389 e-105
2dbj|AK101835.1| Oryza sativa (japonica cultivar-group) cDNA clon... 389 e-105
3gb|BT017430.1| Zea mays clone EL01N0403D03.c mRNA sequence 369 8e-99
4gb|AY110654.1| Zea mays CL6_1 mRNA sequence 349 8e-93
5emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4,... 159 1e-35
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
7emb|CR938710.1| Medicago truncatula chromosome 5 clone mth2-170k... 68 4e-08
8ref|XM_450324.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.038
9ref|XM_450323.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.038
10dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.038
11dbj|AP005738.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.038
12dbj|AK071383.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.038
13dbj|AK059358.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.038
14ref|NM_124197.2| Arabidopsis thaliana indole-3-glycerol-phosphat... 44 0.60
15ref|NM_126473.2| Arabidopsis thaliana indole-3-glycerol-phosphat... 44 0.60
16ref|XM_481579.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.60
17gb|BT009598.1| Triticum aestivum clone wre1n.pk0075.b10:fis, ful... 44 0.60
18gb|BT009207.1| Triticum aestivum clone wle1n.pk0039.d2:fis, full... 44 0.60
19gb|AY060498.1| Arabidopsis thaliana AT5g48220/MIF21_11 mRNA, com... 44 0.60
20gb|AY052223.1| Arabidopsis thaliana AT5g48220/MIF21_11 mRNA, com... 44 0.60
21gb|AY050327.1| Arabidopsis thaliana AT5g48220/MIF21_11 mRNA, com... 44 0.60
22dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.60
23emb|BX820386.1|CNS0A8MY Arabidopsis thaliana Full-length cDNA Co... 44 0.60
24emb|BX819822.1|CNS0A8JB Arabidopsis thaliana Full-length cDNA Co... 44 0.60
25emb|BX833681.1|CNS0A1R5 Arabidopsis thaliana Full-length cDNA Co... 44 0.60
26emb|BX830453.1|CNS0A060 Arabidopsis thaliana Full-length cDNA Co... 44 0.60
27emb|BX832169.1|CNS09ZME Arabidopsis thaliana Full-length cDNA Co... 44 0.60
28gb|AY086973.1| Arabidopsis thaliana clone 3006 mRNA, complete se... 44 0.60
29dbj|AP004554.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.60
30dbj|AK117503.1| Arabidopsis thaliana At2g04400 mRNA for putative... 44 0.60
31dbj|AP005485.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.60
32gb|U18770.1|ATU18770 Arabidopsis thaliana indole-3-glycerol phos... 44 0.60
33gb|AC159205.2| Mus musculus BAC clone RP23-233O17 from chromosom... 42 2.4
34gb|AC160469.5| Mus musculus chromosome 5, clone RP23-318I19, com... 40 9.3
35emb|AL513550.9| Human DNA sequence from clone RP11-98I9 on chrom... 40 9.3
36gb|AF052022.1| Kadipiro virus JKT-7075 segment 8 Vp8 gene, compl... 40 9.3
37gb|AC044840.9| Homo sapiens chromosome , clone RP11-30L3, comple... 40 9.3
38gb|AC181983.2| Gallus gallus BAC clone CH261-63A17 from chromoso... 40 9.3
39gb|AC084758.3| Homo sapiens chromosome 15 clone RP11-348A14 map ... 40 9.3
40gb|AC016866.12| Homo sapiens chromosome 18, clone RP11-15F12, co... 40 9.3
41emb|BX248509.4| Zebrafish DNA sequence from clone CH211-113O22, ... 40 9.3
42gb|AC022467.7|AC022467 Homo sapiens chromosome 15 clone CTD-3247... 40 9.3
43gb|AC021087.5| Homo sapiens chromosome 5 clone CTD-2083E4, compl... 40 9.3
44dbj|BS000111.1| Pan troglodytes chromosome 22 clone:PTB-093K04, ... 40 9.3
45gb|M17188.1|HEFIGCHE1 Heterodontus francisci C-region H-chain im... 40 9.3
46dbj|AB066503.1| Schizophyllum commune ScGP-A gene for heterotrim... 40 9.3
47emb|AL935180.9| Zebrafish DNA sequence from clone CH211-227I1, c... 40 9.3
48gb|AC108828.17| Mus musculus chromosome 5, clone RP23-153H17, co... 40 9.3
49dbj|AP001710.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 9.3
50gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 9.3
51gb|AC091815.7| Homo sapiens 12p BAC RP11-319K17 (Roswell Park Ca... 40 9.3
52dbj|AP000248.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 9.3
53dbj|AP000209.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 9.3 
>ref|XM_472804.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1182

 Score =  389 bits (196), Expect = e-105
 Identities = 397/464 (85%)
 Strand = Plus / Minus

                                                                        
Query: 220  actcacgggtgagatgtctttaccaaaaagcccagcgattgctttcccaggatcgtcctg 279
            |||||| |||||||||||||| || |||||||||||||||||||| |||||||| |||||
Sbjct: 1173 actcacaggtgagatgtctttgccgaaaagcccagcgattgctttgccaggatcctcctg 1114

                                                                        
Query: 280  cttgatgagggattccccgacaagaatcgctttgaccccggcatcctgaacgaacgaaac 339
            ||||||||| || ||||| || ||||  ||||| ||||| |||| ||||||||| |||| 
Sbjct: 1113 cttgatgagagactccccaacgagaacagctttaaccccagcattctgaacgaatgaaat 1054

                                                                        
Query: 340  atggtcaggcgtaaacagtccagattcgcctacgacaattatgtccttttgggctataag 399
            |||||| || || ||||| || ||||| ||||| ||||||||| | || || ||||||  
Sbjct: 1053 atggtctggtgtgaacagccctgattcccctacaacaattatgcctttctgagctatagt 994

                                                                        
Query: 400  ttgtccccgttcaccctccagaagctttttggtgtttgagatgtcaacttcgaaagtttc 459
            |||||| | ||||||||| ||||| ||||| |||||||| || |||||||  ||||| ||
Sbjct: 993  ttgtcctctttcaccctcaagaagatttttagtgtttgaaatatcaacttgaaaagtctc 934

                                                                        
Query: 460  aagattacgattattgatgccaataagctgaatgccatctatccctataacacggtcgat 519
             || ||||| ||||||||||| || ||||| |  |||||||||||||  |||||||| ||
Sbjct: 933  gaggttacggttattgatgccgatgagctggacaccatctatccctaacacacggtccat 874

                                                                        
Query: 520  ttccctttcatcatgcacctcaactaaagctgccatcccgagtattttgcatattttcag 579
            |||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| 
Sbjct: 873  ttccctttcatcatgcacctcaactaaagcagccatgccaagtattttgcatattttcaa 814

                                                                        
Query: 580  catataactgatatcacgatcaggtaagatggcagcaatcagaagaacagcatctgctcc 639
            ||||||  |||||||| ||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 813  catatacttgatatcaagatcaggtaagacagcagcaatcagaagaacagcatctgctcc 754

                                                        
Query: 640  cttagaccgtgcatagtaaagctgccaagcatcaatgatgaact 683
            |||  | || ||||||||||| ||||| |||||||  |||||||
Sbjct: 753  cttcaaacgcgcatagtaaagttgccaggcatcaacaatgaact 710
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>dbj|AK101835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069C16, full
           insert sequence
          Length = 974

 Score =  389 bits (196), Expect = e-105
 Identities = 397/464 (85%)
 Strand = Plus / Minus

                                                                       
Query: 220 actcacgggtgagatgtctttaccaaaaagcccagcgattgctttcccaggatcgtcctg 279
           |||||| |||||||||||||| || |||||||||||||||||||| |||||||| |||||
Sbjct: 734 actcacaggtgagatgtctttgccgaaaagcccagcgattgctttgccaggatcctcctg 675

                                                                       
Query: 280 cttgatgagggattccccgacaagaatcgctttgaccccggcatcctgaacgaacgaaac 339
           ||||||||| || ||||| || ||||  ||||| ||||| |||| ||||||||| |||| 
Sbjct: 674 cttgatgagagactccccaacgagaacagctttaaccccagcattctgaacgaatgaaat 615

                                                                       
Query: 340 atggtcaggcgtaaacagtccagattcgcctacgacaattatgtccttttgggctataag 399
           |||||| || || ||||| || ||||| ||||| ||||||||| | || || ||||||  
Sbjct: 614 atggtctggtgtgaacagccctgattcccctacaacaattatgcctttctgagctatagt 555

                                                                       
Query: 400 ttgtccccgttcaccctccagaagctttttggtgtttgagatgtcaacttcgaaagtttc 459
           |||||| | ||||||||| ||||| ||||| |||||||| || |||||||  ||||| ||
Sbjct: 554 ttgtcctctttcaccctcaagaagatttttagtgtttgaaatatcaacttgaaaagtctc 495

                                                                       
Query: 460 aagattacgattattgatgccaataagctgaatgccatctatccctataacacggtcgat 519
            || ||||| ||||||||||| || ||||| |  |||||||||||||  |||||||| ||
Sbjct: 494 gaggttacggttattgatgccgatgagctggacaccatctatccctaacacacggtccat 435

                                                                       
Query: 520 ttccctttcatcatgcacctcaactaaagctgccatcccgagtattttgcatattttcag 579
           |||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| 
Sbjct: 434 ttccctttcatcatgcacctcaactaaagcagccatgccaagtattttgcatattttcaa 375

                                                                       
Query: 580 catataactgatatcacgatcaggtaagatggcagcaatcagaagaacagcatctgctcc 639
           ||||||  |||||||| ||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 374 catatacttgatatcaagatcaggtaagacagcagcaatcagaagaacagcatctgctcc 315

                                                       
Query: 640 cttagaccgtgcatagtaaagctgccaagcatcaatgatgaact 683
           |||  | || ||||||||||| ||||| |||||||  |||||||
Sbjct: 314 cttcaaacgcgcatagtaaagttgccaggcatcaacaatgaact 271
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>gb|BT017430.1| Zea mays clone EL01N0403D03.c mRNA sequence
          Length = 1119

 Score =  369 bits (186), Expect = 8e-99
 Identities = 387/454 (85%)
 Strand = Plus / Plus

                                                                       
Query: 230 gagatgtctttaccaaaaagcccagcgattgctttcccaggatcgtcctgcttgatgagg 289
           ||||| ||||| || ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 332 gagatatctttgccgaaaagcccagcgattgctttccctggatcctcctgcttgatgagg 391

                                                                       
Query: 290 gattccccgacaagaatcgctttgaccccggcatcctgaacgaacgaaacatggtcaggc 349
           ||||||||||| |||| ||||||||| || || |  ||||||||||||| ||   |||| 
Sbjct: 392 gattccccgacgagaaccgctttgactccagcgttttgaacgaacgaaatatcaccagga 451

                                                                       
Query: 350 gtaaacagtccagattcgcctacgacaattatgtccttttgggctataagttgtccccgt 409
           || |||||  ||||||| ||||| |||||||  |||||||| |||||||  ||||| |||
Sbjct: 452 gtgaacagcgcagattctcctacaacaattacatccttttgagctataacctgtcctcgt 511

                                                                       
Query: 410 tcaccctccagaagctttttggtgtttgagatgtcaacttcgaaagtttcaagattacga 469
           ||||| |||||||||||||| |||||||  || |||||||| || || || |||||||| 
Sbjct: 512 tcaccttccagaagcttttttgtgtttggaatatcaacttcaaatgtctcgagattacgg 571

                                                                       
Query: 470 ttattgatgccaataagctgaatgccatctatccctataacacggtcgatttccctttca 529
           ||||||||||| || ||||| |  ||||| ||||||| ||||||||| ||||| ||||| 
Sbjct: 572 ttattgatgccgatgagctgtacaccatcaatccctaaaacacggtccatttctctttcg 631

                                                                       
Query: 530 tcatgcacctcaactaaagctgccatcccgagtattttgcatattttcagcatataactg 589
           ||||| |||||||||||||| |||||||| ||||||||||| ||||||| ||| ||  ||
Sbjct: 632 tcatgaacctcaactaaagcagccatcccaagtattttgcaaattttcaacatgtatttg 691

                                                                       
Query: 590 atatcacgatcaggtaagatggcagcaatcagaagaacagcatctgctcccttagaccgt 649
           ||||| || |||||||| |  ||||| || ||||||||||||||||| ||||| ||||||
Sbjct: 692 atatcgcggtcaggtaatacagcagctattagaagaacagcatctgcacccttggaccgt 751

                                             
Query: 650 gcatagtaaagctgccaagcatcaatgatgaact 683
           ||||||||||| |||||||||||||| |||||||
Sbjct: 752 gcatagtaaagttgccaagcatcaataatgaact 785
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>gb|AY110654.1| Zea mays CL6_1 mRNA sequence
          Length = 798

 Score =  349 bits (176), Expect = 8e-93
 Identities = 383/454 (84%)
 Strand = Plus / Plus

                                                                       
Query: 230 gagatgtctttaccaaaaagcccagcgattgctttcccaggatcgtcctgcttgatgagg 289
           ||||| ||||| || ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 307 gagatatctttgccgaaaagcccagcgattgctttccctggatcctcctgcttgatgagg 366

                                                                       
Query: 290 gattccccgacaagaatcgctttgaccccggcatcctgaacgaacgaaacatggtcaggc 349
           ||||||||||| |||| |||||||||||| || |  ||||||||||||| ||   |||| 
Sbjct: 367 gattccccgacgagaaccgctttgaccccagcgttttgaacgaacgaaatatcaccagga 426

                                                                       
Query: 350 gtaaacagtccagattcgcctacgacaattatgtccttttgggctataagttgtccccgt 409
           || |||||  ||||||| ||||| |||||||  |||||||| |||||||  ||||| |||
Sbjct: 427 gtgaacagcgcagattctcctacaacaattacatccttttgagctataacctgtcctcgt 486

                                                                       
Query: 410 tcaccctccagaagctttttggtgtttgagatgtcaacttcgaaagtttcaagattacga 469
           ||||| |||||||||      |||||||  || |||||||| || || || |||||||| 
Sbjct: 487 tcaccttccagaagcnnnnnngtgtttgtaatatcaacttcaaatgtctcgagattacgg 546

                                                                       
Query: 470 ttattgatgccaataagctgaatgccatctatccctataacacggtcgatttccctttca 529
           ||||||||||| || ||||| |  ||||| ||||||| ||||||||| ||||| ||||| 
Sbjct: 547 ttattgatgccgatgagctgtacaccatcaatccctaaaacacggtccatttctctttcg 606

                                                                       
Query: 530 tcatgcacctcaactaaagctgccatcccgagtattttgcatattttcagcatataactg 589
           ||||| |||||||||||||| |||||||| ||||||||||| ||||||| ||| ||  ||
Sbjct: 607 tcatgaacctcaactaaagcagccatcccaagtattttgcaaattttcaacatgtatttg 666

                                                                       
Query: 590 atatcacgatcaggtaagatggcagcaatcagaagaacagcatctgctcccttagaccgt 649
           ||||| || |||||||| |  ||||| || ||||||||||||||||| ||||| ||||||
Sbjct: 667 atatcgcggtcaggtaatacagcagctattagaagaacagcatctgcacccttggaccgt 726

                                             
Query: 650 gcatagtaaagctgccaagcatcaatgatgaact 683
           ||||||||||| |||||||||||||| |||||||
Sbjct: 727 gcatagtaaagttgccaagcatcaataatgaact 760
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>emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016O02,
             complete sequence
          Length = 167988

 Score =  159 bits (80), Expect = 1e-35
 Identities = 131/148 (88%)
 Strand = Plus / Plus

                                                                         
Query: 536   acctcaactaaagctgccatcccgagtattttgcatattttcagcatataactgatatca 595
             |||||||||||||| ||||| || ||||||||||||||||||| ||||||  ||||||||
Sbjct: 56275 acctcaactaaagcagccatgccaagtattttgcatattttcaacatatacttgatatca 56334

                                                                         
Query: 596   cgatcaggtaagatggcagcaatcagaagaacagcatctgctcccttagaccgtgcatag 655
              ||||||||||||  ||||||||||||||||||||||||||||||||  | || ||||||
Sbjct: 56335 agatcaggtaagacagcagcaatcagaagaacagcatctgctcccttcaaacgcgcatag 56394

                                         
Query: 656   taaagctgccaagcatcaatgatgaact 683
             ||||| ||||| |||||||  |||||||
Sbjct: 56395 taaagttgccaggcatcaacaatgaact 56422



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 71/78 (91%)
 Strand = Plus / Plus

                                                                         
Query: 220   actcacgggtgagatgtctttaccaaaaagcccagcgattgctttcccaggatcgtcctg 279
             |||||| |||||||||||||| || |||||||||||||||||||| |||||||| |||||
Sbjct: 55131 actcacaggtgagatgtctttgccgaaaagcccagcgattgctttgccaggatcctcctg 55190

                               
Query: 280   cttgatgagggattcccc 297
             ||||||||| || |||||
Sbjct: 55191 cttgatgagagactcccc 55208



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                         
Query: 464   ttacgattattgatgccaataagctgaatgccatctatccctataacacggtcgatttcc 523
             ||||| ||||||||||| || ||||| |  |||||||||||||  |||||||| ||||||
Sbjct: 56020 ttacggttattgatgccgatgagctggacaccatctatccctaacacacggtccatttcc 56079

                             
Query: 524   ctttcatcatgcacct 539
             ||||||||||||||||
Sbjct: 56080 ctttcatcatgcacct 56095
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  159 bits (80), Expect = 1e-35
 Identities = 131/148 (88%)
 Strand = Plus / Plus

                                                                            
Query: 536      acctcaactaaagctgccatcccgagtattttgcatattttcagcatataactgatatca 595
                |||||||||||||| ||||| || ||||||||||||||||||| ||||||  ||||||||
Sbjct: 23338954 acctcaactaaagcagccatgccaagtattttgcatattttcaacatatacttgatatca 23339013

                                                                            
Query: 596      cgatcaggtaagatggcagcaatcagaagaacagcatctgctcccttagaccgtgcatag 655
                 ||||||||||||  ||||||||||||||||||||||||||||||||  | || ||||||
Sbjct: 23339014 agatcaggtaagacagcagcaatcagaagaacagcatctgctcccttcaaacgcgcatag 23339073

                                            
Query: 656      taaagctgccaagcatcaatgatgaact 683
                ||||| ||||| |||||||  |||||||
Sbjct: 23339074 taaagttgccaggcatcaacaatgaact 23339101



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 71/78 (91%)
 Strand = Plus / Plus

                                                                            
Query: 220      actcacgggtgagatgtctttaccaaaaagcccagcgattgctttcccaggatcgtcctg 279
                |||||| |||||||||||||| || |||||||||||||||||||| |||||||| |||||
Sbjct: 23337810 actcacaggtgagatgtctttgccgaaaagcccagcgattgctttgccaggatcctcctg 23337869

                                  
Query: 280      cttgatgagggattcccc 297
                ||||||||| || |||||
Sbjct: 23337870 cttgatgagagactcccc 23337887



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                            
Query: 464      ttacgattattgatgccaataagctgaatgccatctatccctataacacggtcgatttcc 523
                ||||| ||||||||||| || ||||| |  |||||||||||||  |||||||| ||||||
Sbjct: 23338699 ttacggttattgatgccgatgagctggacaccatctatccctaacacacggtccatttcc 23338758

                                
Query: 524      ctttcatcatgcacct 539
                ||||||||||||||||
Sbjct: 23338759 ctttcatcatgcacct 23338774
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>emb|CR938710.1| Medicago truncatula chromosome 5 clone mth2-170k9, COMPLETE SEQUENCE
          Length = 123977

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                         
Query: 588   tgatatcacgatcaggtaagatggcagcaatcagaagaacagcatctgctcccttagacc 647
             |||| ||| |||||||||| |  |||||||| ||||| || |||||||| || || || |
Sbjct: 41443 tgatgtcaagatcaggtaaaacagcagcaattagaagcactgcatctgcacctttcgatc 41384

                                               
Query: 648   gtgcatagtaaagctgccaagcatcaatgatgaa 681
             | |||||||| |||||||||||||| ||||||||
Sbjct: 41383 gagcatagtagagctgccaagcatctatgatgaa 41350



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                         
Query: 459   caagattacgattattgatgccaataagctgaatgccatctatccctataacacggtcga 518
             |||||||||| || |||||||||||||||| || ||| ||||| || | |||||| ||||
Sbjct: 42003 caagattacggttgttgatgccaataagctcaacgccctctattccaagaacacgatcga 41944

                                  
Query: 519   tttccctttcatcatgcacct 539
              |||| | ||||| |||||||
Sbjct: 41943 attccatctcatcgtgcacct 41923
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>ref|XM_450324.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1270

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 470 ttattgatgccaataagctgaatgccatctat 501
           ||||||||||| |||||||||| |||||||||
Sbjct: 954 ttattgatgccgataagctgaacgccatctat 923
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>ref|XM_450323.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1419

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 470 ttattgatgccaataagctgaatgccatctat 501
           ||||||||||| |||||||||| |||||||||
Sbjct: 955 ttattgatgccgataagctgaacgccatctat 924
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 470     ttattgatgccaataagctgaatgccatctat 501
               ||||||||||| |||||||||| |||||||||
Sbjct: 4148276 ttattgatgccgataagctgaacgccatctat 4148307
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>dbj|AP005738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0066C12
          Length = 168874

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                              
Query: 470    ttattgatgccaataagctgaatgccatctat 501
              ||||||||||| |||||||||| |||||||||
Sbjct: 131757 ttattgatgccgataagctgaacgccatctat 131788
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>dbj|AK071383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092E01, full
           insert sequence
          Length = 1420

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 470 ttattgatgccaataagctgaatgccatctat 501
           ||||||||||| |||||||||| |||||||||
Sbjct: 955 ttattgatgccgataagctgaacgccatctat 924
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>dbj|AK059358.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-D08, full
           insert sequence
          Length = 1270

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 470 ttattgatgccaataagctgaatgccatctat 501
           ||||||||||| |||||||||| |||||||||
Sbjct: 954 ttattgatgccgataagctgaacgccatctat 923
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>ref|NM_124197.2| Arabidopsis thaliana indole-3-glycerol-phosphate synthase AT5G48220
           mRNA, complete cds
          Length = 1413

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 455 gtttcaagattacgattattgatgccaataagct 488
           |||||||| ||||| |||||||||||||| ||||
Sbjct: 993 gtttcaaggttacggttattgatgccaatgagct 960
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>ref|NM_126473.2| Arabidopsis thaliana indole-3-glycerol-phosphate synthase AT2G04400
            mRNA, complete cds
          Length = 1721

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 439  gatgtcaacttcgaaagtttcaagattacgattattgatgccaataagct 488
            |||||| ||||| || ||||||||| | || ||||||||||||| |||||
Sbjct: 1036 gatgtccacttcaaatgtttcaagacttcggttattgatgccaacaagct 987
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>ref|XM_481579.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1200

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 470 ttattgatgccaataagctgaa 491
           ||||||||||||||||||||||
Sbjct: 956 ttattgatgccaataagctgaa 935
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>gb|BT009598.1| Triticum aestivum clone wre1n.pk0075.b10:fis, full insert mRNA
           sequence
          Length = 1005

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 458 tcaagattacgattattgatgccaataagctgaa 491
           |||||| |||| || |||||||||||||||||||
Sbjct: 578 tcaagactacggttgttgatgccaataagctgaa 545
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>gb|BT009207.1| Triticum aestivum clone wle1n.pk0039.d2:fis, full insert mRNA
           sequence
          Length = 926

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 458 tcaagattacgattattgatgccaataagctgaa 491
           |||||| |||| || |||||||||||||||||||
Sbjct: 258 tcaagactacggttgttgatgccaataagctgaa 225
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>gb|AY060498.1| Arabidopsis thaliana AT5g48220/MIF21_11 mRNA, complete cds
          Length = 1140

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 455 gtttcaagattacgattattgatgccaataagct 488
           |||||||| ||||| |||||||||||||| ||||
Sbjct: 908 gtttcaaggttacggttattgatgccaatgagct 875
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>gb|AY052223.1| Arabidopsis thaliana AT5g48220/MIF21_11 mRNA, complete cds
          Length = 1358

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 455 gtttcaagattacgattattgatgccaataagct 488
           |||||||| ||||| |||||||||||||| ||||
Sbjct: 941 gtttcaaggttacggttattgatgccaatgagct 908
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>gb|AY050327.1| Arabidopsis thaliana AT5g48220/MIF21_11 mRNA, complete cds
          Length = 1407

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 455 gtttcaagattacgattattgatgccaataagct 488
           |||||||| ||||| |||||||||||||| ||||
Sbjct: 993 gtttcaaggttacggttattgatgccaatgagct 960
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 470      ttattgatgccaataagctgaa 491
                ||||||||||||||||||||||
Sbjct: 13949391 ttattgatgccaataagctgaa 13949370
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>emb|BX820386.1|CNS0A8MY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH28ZG04 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1359

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 439  gatgtcaacttcgaaagtttcaagattacgattattgatgccaataagct 488
            |||||| ||||| || ||||||||| | || ||||||||||||| |||||
Sbjct: 1027 gatgtccacttcaaatgtttcaagacttcggttattgatgccaacaagct 978
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>emb|BX819822.1|CNS0A8JB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS31ZF12 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1346

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 439 gatgtcaacttcgaaagtttcaagattacgattattgatgccaataagct 488
           |||||| ||||| || ||||||||| | || ||||||||||||| |||||
Sbjct: 982 gatgtccacttcaaatgtttcaagacttcggttattgatgccaacaagct 933
to top
>emb|BX833681.1|CNS0A1R5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL70ZC05 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 700

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 455 gtttcaagattacgattattgatgccaataagct 488
           |||||||| ||||| |||||||||||||| ||||
Sbjct: 283 gtttcaaggttacggttattgatgccaatgagct 250
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>emb|BX830453.1|CNS0A060 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB82ZE09 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1306

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 455 gtttcaagattacgattattgatgccaataagct 488
           |||||||| ||||| |||||||||||||| ||||
Sbjct: 928 gtttcaaggttacggttattgatgccaatgagct 895
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>emb|BX832169.1|CNS09ZME Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH56ZC05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1321

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 455 gtttcaagattacgattattgatgccaataagct 488
           |||||||| ||||| |||||||||||||| ||||
Sbjct: 946 gtttcaaggttacggttattgatgccaatgagct 913
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>gb|AY086973.1| Arabidopsis thaliana clone 3006 mRNA, complete sequence
          Length = 1379

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 439  gatgtcaacttcgaaagtttcaagattacgattattgatgccaataagct 488
            |||||| ||||| || ||||||||| | || ||||||||||||| |||||
Sbjct: 1041 gatgtccacttcaaatgtttcaagacttcggttattgatgccaacaagct 992
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>dbj|AP004554.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0005C02
          Length = 62423

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 470  ttattgatgccaataagctgaa 491
            ||||||||||||||||||||||
Sbjct: 3714 ttattgatgccaataagctgaa 3693
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>dbj|AK117503.1| Arabidopsis thaliana At2g04400 mRNA for putative indole-3-glycerol
           phosphate synthase, complete cds, clone: RAFL17-14-C09
          Length = 1106

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 439 gatgtcaacttcgaaagtttcaagattacgattattgatgccaataagct 488
           |||||| ||||| || ||||||||| | || ||||||||||||| |||||
Sbjct: 728 gatgtccacttcaaatgtttcaagacttcggttattgatgccaacaagct 679
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>dbj|AP005485.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1136_D12
          Length = 105521

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 470   ttattgatgccaataagctgaa 491
             ||||||||||||||||||||||
Sbjct: 93786 ttattgatgccaataagctgaa 93765
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>gb|U18770.1|ATU18770 Arabidopsis thaliana indole-3-glycerol phosphate synthase mRNA,
           complete cds
          Length = 1362

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 439 gatgtcaacttcgaaagtttcaagattacgattattgatgccaataagct 488
           |||||| ||||| || ||||||||| | || ||||||||||||| |||||
Sbjct: 978 gatgtccacttcaaatgtttcaagacttcggttattgatgccaacaagct 929
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>gb|AC159205.2| Mus musculus BAC clone RP23-233O17 from chromosome 13, complete sequence
          Length = 202409

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 476    atgccaataagctgaatgcca 496
              |||||||||||||||||||||
Sbjct: 114022 atgccaataagctgaatgcca 114002
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>gb|AC160469.5| Mus musculus chromosome 5, clone RP23-318I19, complete sequence
          Length = 221860

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    actggccaggtaaacaaaac 111
             ||||||||||||||||||||
Sbjct: 13131 actggccaggtaaacaaaac 13112
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>emb|AL513550.9| Human DNA sequence from clone RP11-98I9 on chromosome 6 Contains the gene
              for hexaprenyldihydroxybenzoate methyltransferase,
              mitochondrial precursor (COQ3), the gene for SR rich
              protein (FLJ14992), the USP45 gene for ubiquitin specific
              protease 45, the 3' end of the gene for a novel protein
              similar to ubiquitin carboxyl-terminal hydrolase 16 (EC
              3.1.2.15) and 2 CpG islands, complete sequence
          Length = 127905

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    tccttaccctttcttctatt 208
              ||||||||||||||||||||
Sbjct: 110395 tccttaccctttcttctatt 110414
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>gb|AF052022.1| Kadipiro virus JKT-7075 segment 8 Vp8 gene, complete cds
          Length = 1114

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 523 cctttcatcatgcacctcaa 542
           ||||||||||||||||||||
Sbjct: 320 cctttcatcatgcacctcaa 301
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>gb|AC044840.9| Homo sapiens chromosome , clone RP11-30L3, complete sequence
          Length = 179834

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     tcttaattgcatcctttgaa 38
              ||||||||||||||||||||
Sbjct: 132727 tcttaattgcatcctttgaa 132708
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>gb|AC181983.2| Gallus gallus BAC clone CH261-63A17 from chromosome ul, complete
             sequence
          Length = 161905

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 117   accaaaactctccaaaagcgcata 140
             ||||||||||||||||||| ||||
Sbjct: 30505 accaaaactctccaaaagcacata 30528
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>gb|AC084758.3| Homo sapiens chromosome 15 clone RP11-348A14 map 15q21.1, complete
              sequence
          Length = 192074

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     aattgcatcctttgaataaa 42
              ||||||||||||||||||||
Sbjct: 191842 aattgcatcctttgaataaa 191823
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>gb|AC016866.12| Homo sapiens chromosome 18, clone RP11-15F12, complete sequence
          Length = 171112

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     tcttaattgcatcctttgaa 38
              ||||||||||||||||||||
Sbjct: 167585 tcttaattgcatcctttgaa 167604
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>emb|BX248509.4| Zebrafish DNA sequence from clone CH211-113O22, complete sequence
          Length = 61707

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   ctgttttttctatacaaaat 165
             ||||||||||||||||||||
Sbjct: 50516 ctgttttttctatacaaaat 50535
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>gb|AC022467.7|AC022467 Homo sapiens chromosome 15 clone CTD-3247H4 map 15q21, complete
             sequence
          Length = 193703

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    aattgcatcctttgaataaa 42
             ||||||||||||||||||||
Sbjct: 12726 aattgcatcctttgaataaa 12707
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>gb|AC021087.5| Homo sapiens chromosome 5 clone CTD-2083E4, complete sequence
          Length = 156677

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 617  atcagaagaacagcatctgc 636
            ||||||||||||||||||||
Sbjct: 8426 atcagaagaacagcatctgc 8407
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>dbj|BS000111.1| Pan troglodytes chromosome 22 clone:PTB-093K04, map 22, complete
              sequences
          Length = 184428

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 275    tcctgcttgatgagggattc 294
              ||||||||||||||||||||
Sbjct: 149430 tcctgcttgatgagggattc 149449
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>gb|M17188.1|HEFIGCHE1 Heterodontus francisci C-region H-chain immunoglobulin mRNA,
           partial cds
          Length = 315

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 57  cttccaggaaacagtggtga 76
           ||||||||||||||||||||
Sbjct: 129 cttccaggaaacagtggtga 110
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>dbj|AB066503.1| Schizophyllum commune ScGP-A gene for heterotrimeric G protein
           alpha subunit A, complete cds
          Length = 2142

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 485 agctgaatgccatctatccc 504
           ||||||||||||||||||||
Sbjct: 891 agctgaatgccatctatccc 910
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>emb|AL935180.9| Zebrafish DNA sequence from clone CH211-227I1, complete sequence
          Length = 159007

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 146    ctgttttttctatacaaaat 165
              ||||||||||||||||||||
Sbjct: 145724 ctgttttttctatacaaaat 145705
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>gb|AC108828.17| Mus musculus chromosome 5, clone RP23-153H17, complete sequence
          Length = 218103

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    actggccaggtaaacaaaac 111
             ||||||||||||||||||||
Sbjct: 39759 actggccaggtaaacaaaac 39778
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>dbj|AP001710.1| Homo sapiens genomic DNA, chromosome 21q, section 54/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 275    tcctgcttgatgagggattc 294
              ||||||||||||||||||||
Sbjct: 311728 tcctgcttgatgagggattc 311747
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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                       
Query: 446     acttcgaaagtttcaagattacgattattgatgccaataa 485
               |||||||| ||||  | |||||||||||| ||||||||||
Sbjct: 1211370 acttcgaacgtttttaaattacgattattaatgccaataa 1211331
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>gb|AC091815.7| Homo sapiens 12p BAC RP11-319K17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 169246

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 231    agatgtctttaccaaaaagcccag 254
              ||||||||||||||| ||||||||
Sbjct: 131057 agatgtctttaccaataagcccag 131080
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>dbj|AP000248.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
             clone:P289H18, complete sequence
          Length = 146847

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   tcctgcttgatgagggattc 294
             ||||||||||||||||||||
Sbjct: 54812 tcctgcttgatgagggattc 54831
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>dbj|AP000209.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             f43D11-119B8, segment 7/12, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   tcctgcttgatgagggattc 294
             ||||||||||||||||||||
Sbjct: 85716 tcctgcttgatgagggattc 85735


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,674,634
Number of Sequences: 3902068
Number of extensions: 5674634
Number of successful extensions: 102969
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102752
Number of HSP's gapped (non-prelim): 217
length of query: 683
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 660
effective length of database: 17,143,297,704
effective search space: 11314576484640
effective search space used: 11314576484640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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