ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61h20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK072032.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 1e-35
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 94 7e-16
3dbj|AP004273.2| Oryza sativa (japonica cultivar-group) genomic D... 94 7e-16
4gb|AC093438.2| Drosophila melanogaster 3L BAC RP98-26C20 (Roswel... 46 0.14
5gb|AE003541.3| Drosophila melanogaster chromosome 3L, section 44... 46 0.14
6gb|AC134577.4| Mus musculus BAC clone RP24-79G11 from chromosome... 44 0.57
7gb|AC132221.3| Mus musculus BAC clone RP24-545C12 from chromosom... 44 0.57
8gb|AC122251.4| Mus musculus BAC clone RP23-167J15 from chromosom... 44 0.57
9gb|AC156645.2| Mus musculus BAC clone RP23-59I22 from chromosome... 44 0.57
10emb|AL953860.3| Human DNA sequence from clone RP5-1107B12 on chr... 44 0.57
11emb|BX088566.6| Zebrafish DNA sequence from clone DKEY-63E5 in l... 44 0.57
12emb|BX004839.9| Zebrafish DNA sequence from clone DKEY-18A23 in ... 44 0.57
13emb|BX088539.6| Mouse DNA sequence from clone RP23-152D15 on chr... 44 0.57
14emb|AL137065.10| Human DNA sequence from clone RP11-4P13 on chro... 44 0.57
15gb|AC104692.1| Homo sapiens BAC clone RP11-208G20 from 7, comple... 42 2.3
16ref|XM_673562.1| Plasmodium berghei strain ANKA hypothetical pro... 42 2.3
17ref|XM_662757.1| Cryptosporidium hominis TU502 transmembrane pro... 42 2.3
18emb|AL139348.3| Human DNA sequence from clone RP11-151E14 on chr... 42 2.3
19gb|AY152828.1| Felis catus clone PAC f20 major histocompatiblity... 42 2.3
20emb|BX538353.1| Cryptosporidium parvum chromosome 6, complete se... 42 2.3
21emb|BX005379.9| Zebrafish DNA sequence from clone DKEY-184P9 in ... 42 2.3
22gb|AC094085.3| Homo sapiens chromosome 5 clone CTD-2110K23, comp... 42 2.3
23ref|XM_627784.1| Cryptosporidium parvum Iowa II hypothetical pro... 42 2.3
24gb|AC022416.5|AC022416 Homo sapiens chromosome 5 clone CTC-489P2... 42 2.3
25emb|Y12759.1|FMY12759 F.meningosepticum olpA gene 42 2.3
26gb|AY940097.1| Homo sapiens X-ray repair complementing defective... 42 2.3
27gb|AC124437.4| Mus musculus BAC clone RP24-257N6 from chromosome... 40 8.9
28gb|AC132600.3| Mus musculus BAC clone RP24-134A5 from chromosome... 40 8.9
29gb|AC122389.2| Mus musculus BAC clone RP24-80N23 from 16, comple... 40 8.9
30ref|XM_725972.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 8.9
31ref|XM_961062.1| Plasmodium falciparum 3D7 hypothetical protein ... 40 8.9
32gb|AC002454.1| Homo sapiens BAC clone GS1-552A1 from 7, complete... 40 8.9
33gb|AC073115.5| Homo sapiens BAC clone RP11-571N3 from 7, complet... 40 8.9
34gb|AC140952.1| Pan troglodytes BAC clone RP43-22I12 from 7, comp... 40 8.9
35gb|AC146152.2| Pan troglodytes BAC clone RP43-23M20 from 7, comp... 40 8.9
36gb|AC165156.3| Mus musculus BAC clone RP23-298I7 from chromosome... 40 8.9
37emb|CR382400.1| Plasmodium falciparum chromosome 6, complete seq... 40 8.9
38emb|CR380953.1| Candida glabrata strain CBS138 chromosome G comp... 40 8.9
39gb|AC149594.2| Xenopus tropicalis chromosome CH216-62P2, complet... 40 8.9
40emb|AL645582.22| Mouse DNA sequence from clone RP23-302J15 on ch... 40 8.9
41emb|AL731668.6| Mouse DNA sequence from clone RP23-430C13 on chr... 40 8.9
42emb|BX530721.14| Zebrafish DNA sequence from clone CH211-195B13 ... 40 8.9
43gb|AC069226.19| Homo sapiens 3 BAC RP11-426J22 (Roswell Park Can... 40 8.9
44gb|AC093878.3| Homo sapiens BAC clone RP11-638O6 from 4, complet... 40 8.9
45gb|AF195788.1|AF195788 Rattus norvegicus dystrophin-related prot... 40 8.9
46gb|AF195787.1|AF195787 Rattus norvegicus dystrophin-related prot... 40 8.9
47gb|AC092581.2| Homo sapiens BAC clone RP11-16I14 from 4, complet... 40 8.9
48gb|AC151799.2| Pan troglodytes BAC clone RP43-44D10 from chromos... 40 8.9
49ref|XM_579479.1| PREDICTED: Rattus norvegicus hypothetical gene ... 40 8.9
50dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome 40 8.9
51gb|AC006424.5|AC006424 Arabidopsis thaliana chromosome I BAC F9L... 40 8.9
52gb|AC156558.1| Mus musculus BAC clone RP24-531M24 from 12, compl... 40 8.9
53ref|NM_023971.1| Rattus norvegicus dystrophin related protein 2 ... 40 8.9
54gb|AC164643.4| Mus musculus BAC clone RP23-254F23 from chromosom... 40 8.9
55gb|AC160130.2| Mus musculus BAC clone RP23-254K13 from chromosom... 40 8.9 
>dbj|AK072032.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105M20, full
           insert sequence
          Length = 1682

 Score =  159 bits (80), Expect = 1e-35
 Identities = 176/208 (84%)
 Strand = Plus / Minus

                                                                       
Query: 442 tttgcttcggagccgagacgaataactgtccgatcgcctccaatgcagagacgtcccaac 501
           |||| ||||||||||  ||||||| ||| || |||||||||||||||||||| ||||| |
Sbjct: 766 tttgtttcggagccggcacgaatatctgcccaatcgcctccaatgcagagacatcccagc 707

                                                                       
Query: 502 tctctgcgtgcctaacaaccttatattcttcatctaaatcataggttgtgttccctctta 561
           |||| || || |||   ||||| ||||||||||| |||||||| ||||| |||||||| |
Sbjct: 706 tctcagcatgtctagtgaccttgtattcttcatccaaatcatatgttgtattccctctga 647

                                                                       
Query: 562 tggcgatgaggggcctccatgggagcctcagatatgtccttaacgtccatgatgctatga 621
           ||||||||||||| |||||||| ||||| | |||||||||||  ||||||| ||| ||||
Sbjct: 646 tggcgatgaggggtctccatggaagccttaaatatgtccttagtgtccatgttgccatga 587

                                       
Query: 622 taaacttcgtgtcgaccctcaagccctt 649
           | ||||| || || |||||||| |||||
Sbjct: 586 tgaactttgtttcaaccctcaacccctt 559
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                           
Query: 519     accttatattcttcatctaaatcataggttgtgttccctcttatggcgatgaggggcctc 578
               ||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||| |||
Sbjct: 5685816 accttgtattcttcatccaaatcatatgttgtattccctctgatggcgatgaggggtctc 5685757

                                      
Query: 579     catgggagcctcagatatgtcct 601
               ||||| ||||| | |||||||||
Sbjct: 5685756 catggaagccttaaatatgtcct 5685734



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                           
Query: 442     tttgcttcggagccgagacgaataactgtccgatcgcctccaatgcagagacgtcccaac 501
               |||| ||||||||||  ||||||| ||| || |||||||||||||||||||| ||||| |
Sbjct: 5685992 tttgtttcggagccggcacgaatatctgcccaatcgcctccaatgcagagacatcccagc 5685933

                   
Query: 502     tctc 505
               ||||
Sbjct: 5685932 tctc 5685929
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>dbj|AP004273.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0431A02
          Length = 165038

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                          
Query: 519    accttatattcttcatctaaatcataggttgtgttccctcttatggcgatgaggggcctc 578
              ||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||| |||
Sbjct: 147508 accttgtattcttcatccaaatcatatgttgtattccctctgatggcgatgaggggtctc 147449

                                     
Query: 579    catgggagcctcagatatgtcct 601
              ||||| ||||| | |||||||||
Sbjct: 147448 catggaagccttaaatatgtcct 147426



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                          
Query: 442    tttgcttcggagccgagacgaataactgtccgatcgcctccaatgcagagacgtcccaac 501
              |||| ||||||||||  ||||||| ||| || |||||||||||||||||||| ||||| |
Sbjct: 147684 tttgtttcggagccggcacgaatatctgcccaatcgcctccaatgcagagacatcccagc 147625

                  
Query: 502    tctc 505
              ||||
Sbjct: 147624 tctc 147621
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>gb|AC093438.2| Drosophila melanogaster 3L BAC RP98-26C20 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 167344

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 579   catgggagcctcagatatgtcct 601
             |||||||||||||||||||||||
Sbjct: 91231 catgggagcctcagatatgtcct 91253
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>gb|AE003541.3| Drosophila melanogaster chromosome 3L, section 44 of 83 of the complete
              sequence
          Length = 265524

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 579    catgggagcctcagatatgtcct 601
              |||||||||||||||||||||||
Sbjct: 102269 catgggagcctcagatatgtcct 102291
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>gb|AC134577.4| Mus musculus BAC clone RP24-79G11 from chromosome 14, complete sequence
          Length = 189085

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 516    acaaccttatattcttcatctaaatc 541
              ||||||||| ||||||||||||||||
Sbjct: 158307 acaaccttacattcttcatctaaatc 158282
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>gb|AC132221.3| Mus musculus BAC clone RP24-545C12 from chromosome 12, complete sequence
          Length = 198084

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 155    ccatctggtcccagggttttct 176
              ||||||||||||||||||||||
Sbjct: 134138 ccatctggtcccagggttttct 134159
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>gb|AC122251.4| Mus musculus BAC clone RP23-167J15 from chromosome 14, complete
             sequence
          Length = 204588

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 516   acaaccttatattcttcatctaaatc 541
             ||||||||| ||||||||||||||||
Sbjct: 39437 acaaccttacattcttcatctaaatc 39412
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>gb|AC156645.2| Mus musculus BAC clone RP23-59I22 from chromosome 12, complete sequence
          Length = 247201

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 155   ccatctggtcccagggttttct 176
             ||||||||||||||||||||||
Sbjct: 13987 ccatctggtcccagggttttct 14008
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>emb|AL953860.3| Human DNA sequence from clone RP5-1107B12 on chromosome X Contains the
             5' end of a novel gene (MGC44287), complete sequence
          Length = 46890

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 152   taaccatctggtcccagggttttctctgttggca 185
             |||||||||||||| ||| |||||| ||||||||
Sbjct: 21426 taaccatctggtcctaggcttttctttgttggca 21459
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>emb|BX088566.6| Zebrafish DNA sequence from clone DKEY-63E5 in linkage group 6,
             complete sequence
          Length = 195778

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 37    atgtgtgcaacatttatttttt 58
             ||||||||||||||||||||||
Sbjct: 86731 atgtgtgcaacatttatttttt 86710
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>emb|BX004839.9| Zebrafish DNA sequence from clone DKEY-18A23 in linkage group 6, complete
              sequence
          Length = 223000

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 37     atgtgtgcaacatttatttttt 58
              ||||||||||||||||||||||
Sbjct: 197284 atgtgtgcaacatttatttttt 197263
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>emb|BX088539.6| Mouse DNA sequence from clone RP23-152D15 on chromosome X, complete
             sequence
          Length = 151751

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 148   ggtataaccatctggtcccagg 169
             ||||||||||||||||||||||
Sbjct: 17738 ggtataaccatctggtcccagg 17717
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>emb|AL137065.10| Human DNA sequence from clone RP11-4P13 on chromosome Xq22.1-23,
             complete sequence
          Length = 119311

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 152   taaccatctggtcccagggttttctctgttggca 185
             |||||||||||||| ||| |||||| ||||||||
Sbjct: 95748 taaccatctggtcctaggcttttctttgttggca 95781
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>gb|AC104692.1| Homo sapiens BAC clone RP11-208G20 from 7, complete sequence
          Length = 148606

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 77    gagaaaaataattaaaagcttccac 101
             ||||||||||||||||| |||||||
Sbjct: 81226 gagaaaaataattaaaatcttccac 81202
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>ref|XM_673562.1| Plasmodium berghei strain ANKA hypothetical protein (PB001240.02.0)
           partial mRNA
          Length = 2703

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 115 ataatacaccattatttttgg 135
           |||||||||||||||||||||
Sbjct: 155 ataatacaccattatttttgg 175
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>ref|XM_662757.1| Cryptosporidium hominis TU502 transmembrane protein (Chro.60519)
            partial mRNA
          Length = 2400

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 74   caagagaaaaataattaaaag 94
            |||||||||||||||||||||
Sbjct: 1890 caagagaaaaataattaaaag 1910
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>emb|AL139348.3| Human DNA sequence from clone RP11-151E14 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 68631

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 72    atcaagagaaaaataattaaa 92
             |||||||||||||||||||||
Sbjct: 15284 atcaagagaaaaataattaaa 15304
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>gb|AY152828.1| Felis catus clone PAC f20 major histocompatiblity complex classical
             class II region, partial sequence
          Length = 87684

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 155   ccatctggtcccagggttttctctgttgg 183
             ||||||||||||||| |||||| ||||||
Sbjct: 36997 ccatctggtcccaggcttttctttgttgg 36969
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>emb|BX538353.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 4/4
          Length = 277703

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 74    caagagaaaaataattaaaag 94
             |||||||||||||||||||||
Sbjct: 47438 caagagaaaaataattaaaag 47458
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>emb|BX005379.9| Zebrafish DNA sequence from clone DKEY-184P9 in linkage group 21,
             complete sequence
          Length = 185814

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 46    acatttattttttggaacccc 66
             |||||||||||||||||||||
Sbjct: 85572 acatttattttttggaacccc 85552
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>gb|AC094085.3| Homo sapiens chromosome 5 clone CTD-2110K23, complete sequence
          Length = 85977

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 75   aagagaaaaataattaaaagc 95
            |||||||||||||||||||||
Sbjct: 2004 aagagaaaaataattaaaagc 1984
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>ref|XM_627784.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd6_4530),
            partial mRNA
          Length = 2397

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 74   caagagaaaaataattaaaag 94
            |||||||||||||||||||||
Sbjct: 1887 caagagaaaaataattaaaag 1907
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>gb|AC022416.5|AC022416 Homo sapiens chromosome 5 clone CTC-489P21, complete sequence
          Length = 139980

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 75    aagagaaaaataattaaaagc 95
             |||||||||||||||||||||
Sbjct: 47498 aagagaaaaataattaaaagc 47518
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>emb|Y12759.1|FMY12759 F.meningosepticum olpA gene
          Length = 887

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 119 tacaccattatttttggtaaa 139
           |||||||||||||||||||||
Sbjct: 413 tacaccattatttttggtaaa 393
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>gb|AY940097.1| Homo sapiens X-ray repair complementing defective repair in Chinese
             hamster cells 4 (XRCC4) gene, complete cds
          Length = 279061

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 75    aagagaaaaataattaaaagc 95
             |||||||||||||||||||||
Sbjct: 47284 aagagaaaaataattaaaagc 47264
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>gb|AC124437.4| Mus musculus BAC clone RP24-257N6 from chromosome 3, complete sequence
          Length = 149145

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   tttgttgcactttaaaaatc 320
             ||||||||||||||||||||
Sbjct: 29663 tttgttgcactttaaaaatc 29682
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>gb|AC132600.3| Mus musculus BAC clone RP24-134A5 from chromosome 3, complete sequence
          Length = 160339

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    tttgttgcactttaaaaatc 320
              ||||||||||||||||||||
Sbjct: 147585 tttgttgcactttaaaaatc 147604
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>gb|AC122389.2| Mus musculus BAC clone RP24-80N23 from 16, complete sequence
          Length = 217046

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     agagaaaaataattaaaagc 95
              ||||||||||||||||||||
Sbjct: 181846 agagaaaaataattaaaagc 181827
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>ref|XM_725972.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03098)
            partial mRNA
          Length = 2058

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 522  ttatattcttcatctaaatcatag 545
            |||||||||||||||| |||||||
Sbjct: 1445 ttatattcttcatctatatcatag 1422
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>ref|XM_961062.1| Plasmodium falciparum 3D7 hypothetical protein (PFF0820w) partial
          mRNA
          Length = 3966

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 74 caagagaaaaataattaaaa 93
          ||||||||||||||||||||
Sbjct: 9  caagagaaaaataattaaaa 28
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>gb|AC002454.1| Homo sapiens BAC clone GS1-552A1 from 7, complete sequence
          Length = 172983

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    tttttggtaaaatatccatg 148
              ||||||||||||||||||||
Sbjct: 113911 tttttggtaaaatatccatg 113892
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>gb|AC073115.5| Homo sapiens BAC clone RP11-571N3 from 7, complete sequence
          Length = 167331

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 75   aagagaaaaataattaaaag 94
            ||||||||||||||||||||
Sbjct: 6622 aagagaaaaataattaaaag 6603
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>gb|AC140952.1| Pan troglodytes BAC clone RP43-22I12 from 7, complete sequence
          Length = 170350

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    tttttggtaaaatatccatg 148
              ||||||||||||||||||||
Sbjct: 164163 tttttggtaaaatatccatg 164144
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>gb|AC146152.2| Pan troglodytes BAC clone RP43-23M20 from 7, complete sequence
          Length = 141539

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    aagagaaaaataattaaaag 94
             ||||||||||||||||||||
Sbjct: 71446 aagagaaaaataattaaaag 71465
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>gb|AC165156.3| Mus musculus BAC clone RP23-298I7 from chromosome 9, complete sequence
          Length = 198962

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   aaaatatccatggtataacc 156
             ||||||||||||||||||||
Sbjct: 78915 aaaatatccatggtataacc 78934
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>emb|CR382400.1| Plasmodium falciparum chromosome 6, complete sequence; segment 3/5
          Length = 348034

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   caagagaaaaataattaaaa 93
            ||||||||||||||||||||
Sbjct: 1765 caagagaaaaataattaaaa 1784
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>emb|CR380953.1| Candida glabrata strain CBS138 chromosome G complete sequence
          Length = 992211

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 297    accatttgttgcactttaaa 316
              ||||||||||||||||||||
Sbjct: 208122 accatttgttgcactttaaa 208141
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>gb|AC149594.2| Xenopus tropicalis chromosome CH216-62P2, complete sequence
          Length = 167602

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    tgtgtgcaacatttattttt 57
             ||||||||||||||||||||
Sbjct: 96307 tgtgtgcaacatttattttt 96288
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>emb|AL645582.22| Mouse DNA sequence from clone RP23-302J15 on chromosome 11 Contains two
             CpG islands, complete sequence
          Length = 135978

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   tgcactttaaaaatccttat 325
             ||||||||||||||||||||
Sbjct: 96129 tgcactttaaaaatccttat 96148
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>emb|AL731668.6| Mouse DNA sequence from clone RP23-430C13 on chromosome 11 no genes,
            complete sequence
          Length = 55004

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 75   aagagaaaaataattaaaag 94
            ||||||||||||||||||||
Sbjct: 4915 aagagaaaaataattaaaag 4896
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>emb|BX530721.14| Zebrafish DNA sequence from clone CH211-195B13 in linkage group 19,
             complete sequence
          Length = 201156

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 117   aatacaccattatttttggtaaaa 140
             |||||| |||||||||||||||||
Sbjct: 17561 aatacaacattatttttggtaaaa 17538
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>gb|AC069226.19| Homo sapiens 3 BAC RP11-426J22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 187303

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   gttttctctgttggcactgc 189
             ||||||||||||||||||||
Sbjct: 24693 gttttctctgttggcactgc 24674
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>gb|AC093878.3| Homo sapiens BAC clone RP11-638O6 from 4, complete sequence
          Length = 176018

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 235    ataaggaatctaaatggttattta 258
              |||||||||| |||||||||||||
Sbjct: 173518 ataaggaatcaaaatggttattta 173541
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>gb|AF195788.1|AF195788 Rattus norvegicus dystrophin-related protein 2 B-form splice
           variant (Drp2) mRNA, complete cds
          Length = 3073

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 423 ttgtcagctcagctgccctt 442
           ||||||||||||||||||||
Sbjct: 572 ttgtcagctcagctgccctt 591
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>gb|AF195787.1|AF195787 Rattus norvegicus dystrophin-related protein 2 A-form splice
           variant (Drp2) mRNA, complete cds
          Length = 3140

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 423 ttgtcagctcagctgccctt 442
           ||||||||||||||||||||
Sbjct: 639 ttgtcagctcagctgccctt 658
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>gb|AC092581.2| Homo sapiens BAC clone RP11-16I14 from 4, complete sequence
          Length = 162075

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 154    accatctggtcccagggttttctctgtt 181
              |||||||||||||||| |||||| ||||
Sbjct: 106874 accatctggtcccaggtttttctttgtt 106847
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>gb|AC151799.2| Pan troglodytes BAC clone RP43-44D10 from chromosome 7, complete
             sequence
          Length = 183888

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   tttttggtaaaatatccatg 148
             ||||||||||||||||||||
Sbjct: 80969 tttttggtaaaatatccatg 80988
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>ref|XM_579479.1| PREDICTED: Rattus norvegicus hypothetical gene supported by
           NM_023971 (LOC497847), mRNA
          Length = 3140

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 423 ttgtcagctcagctgccctt 442
           ||||||||||||||||||||
Sbjct: 639 ttgtcagctcagctgccctt 658
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>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome
          Length = 860631

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    cattatttttggtaaaatat 143
              ||||||||||||||||||||
Sbjct: 569727 cattatttttggtaaaatat 569708
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>gb|AC006424.5|AC006424 Arabidopsis thaliana chromosome I BAC F9L11 genomic sequence, complete
             sequence
          Length = 122836

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   tggtataaccatctggtccc 166
             ||||||||||||||||||||
Sbjct: 36422 tggtataaccatctggtccc 36441
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>gb|AC156558.1| Mus musculus BAC clone RP24-531M24 from 12, complete sequence
          Length = 161831

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 132   ttggtaaaatatccatggtataac 155
             |||||||||||||| |||||||||
Sbjct: 38880 ttggtaaaatatccttggtataac 38857
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>ref|NM_023971.1| Rattus norvegicus dystrophin related protein 2 (Drp2), mRNA
          Length = 3140

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 423 ttgtcagctcagctgccctt 442
           ||||||||||||||||||||
Sbjct: 639 ttgtcagctcagctgccctt 658
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>gb|AC164643.4| Mus musculus BAC clone RP23-254F23 from chromosome 7, complete sequence
          Length = 232098

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    aaggaatctaaatggttatt 256
              ||||||||||||||||||||
Sbjct: 216639 aaggaatctaaatggttatt 216620
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>gb|AC160130.2| Mus musculus BAC clone RP23-254K13 from chromosome 12, complete sequence
          Length = 177970

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 132    ttggtaaaatatccatggtataac 155
              |||||||||||||| |||||||||
Sbjct: 153049 ttggtaaaatatccttggtataac 153026


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,694,497
Number of Sequences: 3902068
Number of extensions: 6694497
Number of successful extensions: 141630
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 141417
Number of HSP's gapped (non-prelim): 213
length of query: 655
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 632
effective length of database: 17,143,297,704
effective search space: 10834564148928
effective search space used: 10834564148928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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