Clone Name | rbah61h20 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK072032.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105M20, full insert sequence Length = 1682 Score = 159 bits (80), Expect = 1e-35 Identities = 176/208 (84%) Strand = Plus / Minus Query: 442 tttgcttcggagccgagacgaataactgtccgatcgcctccaatgcagagacgtcccaac 501 |||| |||||||||| ||||||| ||| || |||||||||||||||||||| ||||| | Sbjct: 766 tttgtttcggagccggcacgaatatctgcccaatcgcctccaatgcagagacatcccagc 707 Query: 502 tctctgcgtgcctaacaaccttatattcttcatctaaatcataggttgtgttccctctta 561 |||| || || ||| ||||| ||||||||||| |||||||| ||||| |||||||| | Sbjct: 706 tctcagcatgtctagtgaccttgtattcttcatccaaatcatatgttgtattccctctga 647 Query: 562 tggcgatgaggggcctccatgggagcctcagatatgtccttaacgtccatgatgctatga 621 ||||||||||||| |||||||| ||||| | ||||||||||| ||||||| ||| |||| Sbjct: 646 tggcgatgaggggtctccatggaagccttaaatatgtccttagtgtccatgttgccatga 587 Query: 622 taaacttcgtgtcgaccctcaagccctt 649 | ||||| || || |||||||| ||||| Sbjct: 586 tgaactttgtttcaaccctcaacccctt 559
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 93.7 bits (47), Expect = 7e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 519 accttatattcttcatctaaatcataggttgtgttccctcttatggcgatgaggggcctc 578 ||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||| Sbjct: 5685816 accttgtattcttcatccaaatcatatgttgtattccctctgatggcgatgaggggtctc 5685757 Query: 579 catgggagcctcagatatgtcct 601 ||||| ||||| | ||||||||| Sbjct: 5685756 catggaagccttaaatatgtcct 5685734 Score = 63.9 bits (32), Expect = 6e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 442 tttgcttcggagccgagacgaataactgtccgatcgcctccaatgcagagacgtcccaac 501 |||| |||||||||| ||||||| ||| || |||||||||||||||||||| ||||| | Sbjct: 5685992 tttgtttcggagccggcacgaatatctgcccaatcgcctccaatgcagagacatcccagc 5685933 Query: 502 tctc 505 |||| Sbjct: 5685932 tctc 5685929
>dbj|AP004273.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0431A02 Length = 165038 Score = 93.7 bits (47), Expect = 7e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 519 accttatattcttcatctaaatcataggttgtgttccctcttatggcgatgaggggcctc 578 ||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||| Sbjct: 147508 accttgtattcttcatccaaatcatatgttgtattccctctgatggcgatgaggggtctc 147449 Query: 579 catgggagcctcagatatgtcct 601 ||||| ||||| | ||||||||| Sbjct: 147448 catggaagccttaaatatgtcct 147426 Score = 63.9 bits (32), Expect = 6e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 442 tttgcttcggagccgagacgaataactgtccgatcgcctccaatgcagagacgtcccaac 501 |||| |||||||||| ||||||| ||| || |||||||||||||||||||| ||||| | Sbjct: 147684 tttgtttcggagccggcacgaatatctgcccaatcgcctccaatgcagagacatcccagc 147625 Query: 502 tctc 505 |||| Sbjct: 147624 tctc 147621
>gb|AC093438.2| Drosophila melanogaster 3L BAC RP98-26C20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167344 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 579 catgggagcctcagatatgtcct 601 ||||||||||||||||||||||| Sbjct: 91231 catgggagcctcagatatgtcct 91253
>gb|AE003541.3| Drosophila melanogaster chromosome 3L, section 44 of 83 of the complete sequence Length = 265524 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 579 catgggagcctcagatatgtcct 601 ||||||||||||||||||||||| Sbjct: 102269 catgggagcctcagatatgtcct 102291
>gb|AC134577.4| Mus musculus BAC clone RP24-79G11 from chromosome 14, complete sequence Length = 189085 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 516 acaaccttatattcttcatctaaatc 541 ||||||||| |||||||||||||||| Sbjct: 158307 acaaccttacattcttcatctaaatc 158282
>gb|AC132221.3| Mus musculus BAC clone RP24-545C12 from chromosome 12, complete sequence Length = 198084 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 155 ccatctggtcccagggttttct 176 |||||||||||||||||||||| Sbjct: 134138 ccatctggtcccagggttttct 134159
>gb|AC122251.4| Mus musculus BAC clone RP23-167J15 from chromosome 14, complete sequence Length = 204588 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 516 acaaccttatattcttcatctaaatc 541 ||||||||| |||||||||||||||| Sbjct: 39437 acaaccttacattcttcatctaaatc 39412
>gb|AC156645.2| Mus musculus BAC clone RP23-59I22 from chromosome 12, complete sequence Length = 247201 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 155 ccatctggtcccagggttttct 176 |||||||||||||||||||||| Sbjct: 13987 ccatctggtcccagggttttct 14008
>emb|AL953860.3| Human DNA sequence from clone RP5-1107B12 on chromosome X Contains the 5' end of a novel gene (MGC44287), complete sequence Length = 46890 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 152 taaccatctggtcccagggttttctctgttggca 185 |||||||||||||| ||| |||||| |||||||| Sbjct: 21426 taaccatctggtcctaggcttttctttgttggca 21459
>emb|BX088566.6| Zebrafish DNA sequence from clone DKEY-63E5 in linkage group 6, complete sequence Length = 195778 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 37 atgtgtgcaacatttatttttt 58 |||||||||||||||||||||| Sbjct: 86731 atgtgtgcaacatttatttttt 86710
>emb|BX004839.9| Zebrafish DNA sequence from clone DKEY-18A23 in linkage group 6, complete sequence Length = 223000 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 37 atgtgtgcaacatttatttttt 58 |||||||||||||||||||||| Sbjct: 197284 atgtgtgcaacatttatttttt 197263
>emb|BX088539.6| Mouse DNA sequence from clone RP23-152D15 on chromosome X, complete sequence Length = 151751 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 148 ggtataaccatctggtcccagg 169 |||||||||||||||||||||| Sbjct: 17738 ggtataaccatctggtcccagg 17717
>emb|AL137065.10| Human DNA sequence from clone RP11-4P13 on chromosome Xq22.1-23, complete sequence Length = 119311 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 152 taaccatctggtcccagggttttctctgttggca 185 |||||||||||||| ||| |||||| |||||||| Sbjct: 95748 taaccatctggtcctaggcttttctttgttggca 95781
>gb|AC104692.1| Homo sapiens BAC clone RP11-208G20 from 7, complete sequence Length = 148606 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 77 gagaaaaataattaaaagcttccac 101 ||||||||||||||||| ||||||| Sbjct: 81226 gagaaaaataattaaaatcttccac 81202
>ref|XM_673562.1| Plasmodium berghei strain ANKA hypothetical protein (PB001240.02.0) partial mRNA Length = 2703 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 ataatacaccattatttttgg 135 ||||||||||||||||||||| Sbjct: 155 ataatacaccattatttttgg 175
>ref|XM_662757.1| Cryptosporidium hominis TU502 transmembrane protein (Chro.60519) partial mRNA Length = 2400 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 caagagaaaaataattaaaag 94 ||||||||||||||||||||| Sbjct: 1890 caagagaaaaataattaaaag 1910
>emb|AL139348.3| Human DNA sequence from clone RP11-151E14 on chromosome 20 Contains ESTs, STSs and GSSs, complete sequence Length = 68631 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 72 atcaagagaaaaataattaaa 92 ||||||||||||||||||||| Sbjct: 15284 atcaagagaaaaataattaaa 15304
>gb|AY152828.1| Felis catus clone PAC f20 major histocompatiblity complex classical class II region, partial sequence Length = 87684 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 155 ccatctggtcccagggttttctctgttgg 183 ||||||||||||||| |||||| |||||| Sbjct: 36997 ccatctggtcccaggcttttctttgttgg 36969
>emb|BX538353.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 4/4 Length = 277703 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 caagagaaaaataattaaaag 94 ||||||||||||||||||||| Sbjct: 47438 caagagaaaaataattaaaag 47458
>emb|BX005379.9| Zebrafish DNA sequence from clone DKEY-184P9 in linkage group 21, complete sequence Length = 185814 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 acatttattttttggaacccc 66 ||||||||||||||||||||| Sbjct: 85572 acatttattttttggaacccc 85552
>gb|AC094085.3| Homo sapiens chromosome 5 clone CTD-2110K23, complete sequence Length = 85977 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 aagagaaaaataattaaaagc 95 ||||||||||||||||||||| Sbjct: 2004 aagagaaaaataattaaaagc 1984
>ref|XM_627784.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd6_4530), partial mRNA Length = 2397 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 caagagaaaaataattaaaag 94 ||||||||||||||||||||| Sbjct: 1887 caagagaaaaataattaaaag 1907
>gb|AC022416.5|AC022416 Homo sapiens chromosome 5 clone CTC-489P21, complete sequence Length = 139980 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 aagagaaaaataattaaaagc 95 ||||||||||||||||||||| Sbjct: 47498 aagagaaaaataattaaaagc 47518
>emb|Y12759.1|FMY12759 F.meningosepticum olpA gene Length = 887 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 tacaccattatttttggtaaa 139 ||||||||||||||||||||| Sbjct: 413 tacaccattatttttggtaaa 393
>gb|AY940097.1| Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4) gene, complete cds Length = 279061 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 aagagaaaaataattaaaagc 95 ||||||||||||||||||||| Sbjct: 47284 aagagaaaaataattaaaagc 47264
>gb|AC124437.4| Mus musculus BAC clone RP24-257N6 from chromosome 3, complete sequence Length = 149145 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tttgttgcactttaaaaatc 320 |||||||||||||||||||| Sbjct: 29663 tttgttgcactttaaaaatc 29682
>gb|AC132600.3| Mus musculus BAC clone RP24-134A5 from chromosome 3, complete sequence Length = 160339 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tttgttgcactttaaaaatc 320 |||||||||||||||||||| Sbjct: 147585 tttgttgcactttaaaaatc 147604
>gb|AC122389.2| Mus musculus BAC clone RP24-80N23 from 16, complete sequence Length = 217046 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 agagaaaaataattaaaagc 95 |||||||||||||||||||| Sbjct: 181846 agagaaaaataattaaaagc 181827
>ref|XM_725972.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03098) partial mRNA Length = 2058 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 522 ttatattcttcatctaaatcatag 545 |||||||||||||||| ||||||| Sbjct: 1445 ttatattcttcatctatatcatag 1422
>ref|XM_961062.1| Plasmodium falciparum 3D7 hypothetical protein (PFF0820w) partial mRNA Length = 3966 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 caagagaaaaataattaaaa 93 |||||||||||||||||||| Sbjct: 9 caagagaaaaataattaaaa 28
>gb|AC002454.1| Homo sapiens BAC clone GS1-552A1 from 7, complete sequence Length = 172983 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 tttttggtaaaatatccatg 148 |||||||||||||||||||| Sbjct: 113911 tttttggtaaaatatccatg 113892
>gb|AC073115.5| Homo sapiens BAC clone RP11-571N3 from 7, complete sequence Length = 167331 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 aagagaaaaataattaaaag 94 |||||||||||||||||||| Sbjct: 6622 aagagaaaaataattaaaag 6603
>gb|AC140952.1| Pan troglodytes BAC clone RP43-22I12 from 7, complete sequence Length = 170350 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 tttttggtaaaatatccatg 148 |||||||||||||||||||| Sbjct: 164163 tttttggtaaaatatccatg 164144
>gb|AC146152.2| Pan troglodytes BAC clone RP43-23M20 from 7, complete sequence Length = 141539 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 aagagaaaaataattaaaag 94 |||||||||||||||||||| Sbjct: 71446 aagagaaaaataattaaaag 71465
>gb|AC165156.3| Mus musculus BAC clone RP23-298I7 from chromosome 9, complete sequence Length = 198962 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 aaaatatccatggtataacc 156 |||||||||||||||||||| Sbjct: 78915 aaaatatccatggtataacc 78934
>emb|CR382400.1| Plasmodium falciparum chromosome 6, complete sequence; segment 3/5 Length = 348034 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 caagagaaaaataattaaaa 93 |||||||||||||||||||| Sbjct: 1765 caagagaaaaataattaaaa 1784
>emb|CR380953.1| Candida glabrata strain CBS138 chromosome G complete sequence Length = 992211 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 accatttgttgcactttaaa 316 |||||||||||||||||||| Sbjct: 208122 accatttgttgcactttaaa 208141
>gb|AC149594.2| Xenopus tropicalis chromosome CH216-62P2, complete sequence Length = 167602 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 tgtgtgcaacatttattttt 57 |||||||||||||||||||| Sbjct: 96307 tgtgtgcaacatttattttt 96288
>emb|AL645582.22| Mouse DNA sequence from clone RP23-302J15 on chromosome 11 Contains two CpG islands, complete sequence Length = 135978 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 tgcactttaaaaatccttat 325 |||||||||||||||||||| Sbjct: 96129 tgcactttaaaaatccttat 96148
>emb|AL731668.6| Mouse DNA sequence from clone RP23-430C13 on chromosome 11 no genes, complete sequence Length = 55004 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 aagagaaaaataattaaaag 94 |||||||||||||||||||| Sbjct: 4915 aagagaaaaataattaaaag 4896
>emb|BX530721.14| Zebrafish DNA sequence from clone CH211-195B13 in linkage group 19, complete sequence Length = 201156 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 aatacaccattatttttggtaaaa 140 |||||| ||||||||||||||||| Sbjct: 17561 aatacaacattatttttggtaaaa 17538
>gb|AC069226.19| Homo sapiens 3 BAC RP11-426J22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 187303 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 gttttctctgttggcactgc 189 |||||||||||||||||||| Sbjct: 24693 gttttctctgttggcactgc 24674
>gb|AC093878.3| Homo sapiens BAC clone RP11-638O6 from 4, complete sequence Length = 176018 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 235 ataaggaatctaaatggttattta 258 |||||||||| ||||||||||||| Sbjct: 173518 ataaggaatcaaaatggttattta 173541
>gb|AF195788.1|AF195788 Rattus norvegicus dystrophin-related protein 2 B-form splice variant (Drp2) mRNA, complete cds Length = 3073 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 ttgtcagctcagctgccctt 442 |||||||||||||||||||| Sbjct: 572 ttgtcagctcagctgccctt 591
>gb|AF195787.1|AF195787 Rattus norvegicus dystrophin-related protein 2 A-form splice variant (Drp2) mRNA, complete cds Length = 3140 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 ttgtcagctcagctgccctt 442 |||||||||||||||||||| Sbjct: 639 ttgtcagctcagctgccctt 658
>gb|AC092581.2| Homo sapiens BAC clone RP11-16I14 from 4, complete sequence Length = 162075 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 accatctggtcccagggttttctctgtt 181 |||||||||||||||| |||||| |||| Sbjct: 106874 accatctggtcccaggtttttctttgtt 106847
>gb|AC151799.2| Pan troglodytes BAC clone RP43-44D10 from chromosome 7, complete sequence Length = 183888 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 tttttggtaaaatatccatg 148 |||||||||||||||||||| Sbjct: 80969 tttttggtaaaatatccatg 80988
>ref|XM_579479.1| PREDICTED: Rattus norvegicus hypothetical gene supported by NM_023971 (LOC497847), mRNA Length = 3140 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 ttgtcagctcagctgccctt 442 |||||||||||||||||||| Sbjct: 639 ttgtcagctcagctgccctt 658
>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome Length = 860631 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cattatttttggtaaaatat 143 |||||||||||||||||||| Sbjct: 569727 cattatttttggtaaaatat 569708
>gb|AC006424.5|AC006424 Arabidopsis thaliana chromosome I BAC F9L11 genomic sequence, complete sequence Length = 122836 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 tggtataaccatctggtccc 166 |||||||||||||||||||| Sbjct: 36422 tggtataaccatctggtccc 36441
>gb|AC156558.1| Mus musculus BAC clone RP24-531M24 from 12, complete sequence Length = 161831 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 ttggtaaaatatccatggtataac 155 |||||||||||||| ||||||||| Sbjct: 38880 ttggtaaaatatccttggtataac 38857
>ref|NM_023971.1| Rattus norvegicus dystrophin related protein 2 (Drp2), mRNA Length = 3140 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 ttgtcagctcagctgccctt 442 |||||||||||||||||||| Sbjct: 639 ttgtcagctcagctgccctt 658
>gb|AC164643.4| Mus musculus BAC clone RP23-254F23 from chromosome 7, complete sequence Length = 232098 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 aaggaatctaaatggttatt 256 |||||||||||||||||||| Sbjct: 216639 aaggaatctaaatggttatt 216620
>gb|AC160130.2| Mus musculus BAC clone RP23-254K13 from chromosome 12, complete sequence Length = 177970 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 ttggtaaaatatccatggtataac 155 |||||||||||||| ||||||||| Sbjct: 153049 ttggtaaaatatccttggtataac 153026 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,694,497 Number of Sequences: 3902068 Number of extensions: 6694497 Number of successful extensions: 141630 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 141417 Number of HSP's gapped (non-prelim): 213 length of query: 655 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 632 effective length of database: 17,143,297,704 effective search space: 10834564148928 effective search space used: 10834564148928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)