Clone Name | rbah61h18 |
---|---|
Clone Library Name | barley_pub |
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 58.0 bits (29), Expect = 6e-06 Identities = 50/57 (87%) Strand = Plus / Minus Query: 13 aaattaggagcatgtggtattcttttcttccgttacaacacataggcccttttgcta 69 |||||| |||| ||||||||| |||||||||||| |||| || ||||||||||||| Sbjct: 61532 aaattaagagcgtgtggtatttttttcttccgttgcaacgcacgggcccttttgcta 61476
>gb|AY268139.1| Hordeum vulgare BAC 184G9, complete sequece Length = 120562 Score = 50.1 bits (25), Expect = 0.002 Identities = 43/49 (87%) Strand = Plus / Minus Query: 21 agcatgtggtattcttttcttccgttacaacacataggcccttttgcta 69 ||||||||||||| |||||| ||||| |||| || ||||||||||||| Sbjct: 72540 agcatgtggtatttttttctcccgttgcaacgcacgggcccttttgcta 72492
>emb|AL928838.8| Zebrafish DNA sequence from clone CH211-148F13, complete sequence Length = 167563 Score = 44.1 bits (22), Expect = 0.093 Identities = 22/22 (100%) Strand = Plus / Plus Query: 70 taaagacaaatattttggacaa 91 |||||||||||||||||||||| Sbjct: 106913 taaagacaaatattttggacaa 106934
>emb|AL935041.4| Zebrafish DNA sequence from clone CH211-172J16, complete sequence Length = 155853 Score = 44.1 bits (22), Expect = 0.093 Identities = 22/22 (100%) Strand = Plus / Minus Query: 70 taaagacaaatattttggacaa 91 |||||||||||||||||||||| Sbjct: 85847 taaagacaaatattttggacaa 85826
>gb|DQ351213.1| Hordeum vulgare subsp. vulgare resistance protein (ABC1037) gene, complete cds Length = 25080 Score = 42.1 bits (21), Expect = 0.37 Identities = 39/45 (86%) Strand = Plus / Minus Query: 25 tgtggtattcttttcttccgttacaacacataggcccttttgcta 69 ||||||||| |||||| ||||| |||| || ||||||||||||| Sbjct: 22649 tgtggtatttttttctcccgttgcaacgcacgggcccttttgcta 22605
>dbj|AB086418.1| Hordeum vulgare gene for O-methyltransferase, partial cds, isolate:1743 Length = 1393 Score = 42.1 bits (21), Expect = 0.37 Identities = 39/45 (86%) Strand = Plus / Plus Query: 25 tgtggtattcttttcttccgttacaacacataggcccttttgcta 69 ||||||||| ||||| ||||| |||| ||| ||||||||||||| Sbjct: 81 tgtggtatttctttctcccgttgcaacgcatgggcccttttgcta 125
>dbj|AB086417.1| Hordeum vulgare gene for O-methyltransferase, partial cds, isolate:K305 Length = 1395 Score = 42.1 bits (21), Expect = 0.37 Identities = 39/45 (86%) Strand = Plus / Plus Query: 25 tgtggtattcttttcttccgttacaacacataggcccttttgcta 69 ||||||||| ||||| ||||| |||| ||| ||||||||||||| Sbjct: 81 tgtggtatttctttctcccgttgcaacgcatgggcccttttgcta 125
>gb|AC141426.3| Mus musculus BAC clone RP23-280I14 from chromosome 12, complete sequence Length = 227835 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 atattttggacaacctattt 98 |||||||||||||||||||| Sbjct: 82665 atattttggacaacctattt 82684
>gb|AY505106.1| Pan troglodytes transthyretin (TTR) gene, promoter region, exon 1 and partial cds Length = 4706 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 aagacaaatattttggacaa 91 |||||||||||||||||||| Sbjct: 1373 aagacaaatattttggacaa 1392
>emb|CR932039.2| Medicago truncatula chromosome 5 clone mth2-6h11, COMPLETE SEQUENCE Length = 132508 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaagacaaatattttggaca 90 |||||||||||||||||||| Sbjct: 14163 aaagacaaatattttggaca 14182
>gb|AC010017.5| Drosophila melanogaster 3L BAC RP98-2C22 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 182960 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 tgctataaagacaaatattt 84 |||||||||||||||||||| Sbjct: 146370 tgctataaagacaaatattt 146389
>gb|AC010055.6| Drosophila melanogaster 3L BAC RP98-24H3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163098 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 tgctataaagacaaatattt 84 |||||||||||||||||||| Sbjct: 29815 tgctataaagacaaatattt 29834
>gb|AC079096.4| Homo sapiens chromosome 18, clone RP11-75N4, complete sequence Length = 119927 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 aagacaaatattttggacaa 91 |||||||||||||||||||| Sbjct: 97422 aagacaaatattttggacaa 97403
>gb|AC017100.4| Homo sapiens BAC clone RP11-549B18 from 18, complete sequence Length = 202950 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 aagacaaatattttggacaa 91 |||||||||||||||||||| Sbjct: 144985 aagacaaatattttggacaa 145004
>emb|BX088524.16| Zebrafish DNA sequence from clone CH211-215A9 in linkage group 10, complete sequence Length = 228624 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 tataaagacaaatattttgg 87 |||||||||||||||||||| Sbjct: 165363 tataaagacaaatattttgg 165382
>gb|AE003593.2| Drosophila melanogaster chromosome 3L, section 74 of 83 of the complete sequence Length = 313157 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tgctataaagacaaatattt 84 |||||||||||||||||||| Sbjct: 255562 tgctataaagacaaatattt 255543
>emb|CR381687.17| Zebrafish DNA sequence from clone DKEY-283C16 in linkage group 11, complete sequence Length = 202525 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 taaagacaaatattttggac 89 |||||||||||||||||||| Sbjct: 179953 taaagacaaatattttggac 179934
>ref|XM_712838.1| Candida albicans SC5314 3-keto sterol reductase (CaO19_3240), mRNA Length = 1041 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 aaagacaaatattttggac 89 ||||||||||||||||||| Sbjct: 578 aaagacaaatattttggac 560
>ref|XM_712772.1| Candida albicans SC5314 3-keto sterol reductase (CaO19_10750), mRNA Length = 1041 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 aaagacaaatattttggac 89 ||||||||||||||||||| Sbjct: 578 aaagacaaatattttggac 560
>ref|XM_708170.1| Candida albicans SC5314 putative mRNA deadenylase (CaO19.9915), mRNA Length = 1668 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 agacaaatattttggacaa 91 ||||||||||||||||||| Sbjct: 360 agacaaatattttggacaa 378
>ref|XM_708119.1| Candida albicans SC5314 putative mRNA deadenylase (CaO19.2379), mRNA Length = 1662 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 agacaaatattttggacaa 91 ||||||||||||||||||| Sbjct: 360 agacaaatattttggacaa 378
>gb|AC147051.2| Mus musculus BAC clone RP23-90H22 from chromosome 8, complete sequence Length = 224213 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 tataaagacaaatattttg 86 ||||||||||||||||||| Sbjct: 217248 tataaagacaaatattttg 217266
>gb|AC127276.3| Mus musculus BAC clone RP24-221M17 from chromosome 8, complete sequence Length = 120935 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 tataaagacaaatattttg 86 ||||||||||||||||||| Sbjct: 79093 tataaagacaaatattttg 79111
>gb|AC126551.3| Mus musculus BAC clone RP24-505C20 from chromosome 12, complete sequence Length = 151373 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 gctataaagacaaatattt 84 ||||||||||||||||||| Sbjct: 27538 gctataaagacaaatattt 27520
>gb|AC124542.4| Mus musculus BAC clone RP23-259B10 from 12, complete sequence Length = 179046 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 gctataaagacaaatattt 84 ||||||||||||||||||| Sbjct: 166359 gctataaagacaaatattt 166341
>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02, complete sequence Length = 173171 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 tgctataaagacaaatatt 83 ||||||||||||||||||| Sbjct: 83915 tgctataaagacaaatatt 83933
>ref|XM_647080.1| Entamoeba histolytica HM-1:IMSS long-chain-fatty-acid--CoA ligase (129.t00015) partial mRNA Length = 2034 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 ataaagacaaatattttgg 87 ||||||||||||||||||| Sbjct: 1772 ataaagacaaatattttgg 1790
>gb|BC042224.1| Xenopus laevis hepatic nuclear factor 4, mRNA (cDNA clone MGC:53298 IMAGE:5570423), complete cds Length = 4170 Score = 38.2 bits (19), Expect = 5.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 62 ttttgctataaagacaaatattt 84 |||| |||||||||||||||||| Sbjct: 4052 ttttcctataaagacaaatattt 4030
>ref|XM_651284.1| Entamoeba histolytica HM-1:IMSS ubiquitin carboxyl-terminal hydrolase (13.t00036) partial mRNA Length = 4818 Score = 38.2 bits (19), Expect = 5.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 30 tattcttttcttccgttacaaca 52 |||||||||||||| |||||||| Sbjct: 1906 tattcttttcttcctttacaaca 1884
>emb|AL157884.9| Human DNA sequence from clone RP11-462B18 on chromosome 9p13.1-21.1 Contains a pseudogene similar to part of membrane guanylyl cyclase, a ribosomal protein S11 (RPS11) pseudogene, a novel gene and a CpG island, complete sequence Length = 176932 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 ataaagacaaatattttgg 87 ||||||||||||||||||| Sbjct: 174634 ataaagacaaatattttgg 174652
>emb|AL161550.2|ATCHRIV50 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 50 Length = 199382 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 tattcttttcttccgttac 48 ||||||||||||||||||| Sbjct: 181067 tattcttttcttccgttac 181049
>emb|AL162506.1|ATF17C15 Arabidopsis thaliana DNA chromosome 5, BAC clone F17C15 (ESSA project) Length = 102897 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 aaagacaaatattttggac 89 ||||||||||||||||||| Sbjct: 43908 aaagacaaatattttggac 43890
>emb|AL035064.1|SPAC1687 S.pombe chromosome I cosmid c1687 Length = 41757 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 gctataaagacaaatattt 84 ||||||||||||||||||| Sbjct: 10388 gctataaagacaaatattt 10370
>emb|AL022580.1|ATT5K18 Arabidopsis thaliana DNA chromosome 4, BAC clone T5K18 (ESSA project) Length = 90551 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 tattcttttcttccgttac 48 ||||||||||||||||||| Sbjct: 75016 tattcttttcttccgttac 74998
>gb|AC114300.2| Homo sapiens chromosome 5 clone RP11-136H13, complete sequence Length = 151166 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 aagacaaatattttggaca 90 ||||||||||||||||||| Sbjct: 80200 aagacaaatattttggaca 80218
>gb|AC112221.2| Homo sapiens chromosome 3 clone RP11-11C8, complete sequence Length = 151382 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 agacaaatattttggacaa 91 ||||||||||||||||||| Sbjct: 39082 agacaaatattttggacaa 39100
>gb|AC159293.2| Mus musculus BAC clone RP23-282K7 from chromosome 12, complete sequence Length = 181226 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 gctataaagacaaatattt 84 ||||||||||||||||||| Sbjct: 99918 gctataaagacaaatattt 99900
>gb|AC015553.21|AC015553 Homo sapiens 9 BAC RP11-100N10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162063 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 ataaagacaaatattttgg 87 ||||||||||||||||||| Sbjct: 114131 ataaagacaaatattttgg 114149
>gb|AC008004.5|AC008004 Drosophila melanogaster, chromosome 2R, region 54B-54C, BAC clone BACR21A09, complete sequence Length = 175506 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 83 tttggacaacctatttgat 101 ||||||||||||||||||| Sbjct: 115111 tttggacaacctatttgat 115093
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 tgctataaagacaaatatt 83 ||||||||||||||||||| Sbjct: 24963330 tgctataaagacaaatatt 24963348
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 tataaagacaaatattttg 86 ||||||||||||||||||| Sbjct: 12621284 tataaagacaaatattttg 12621302
>gb|AC079402.5| Homo sapiens BAC clone RP11-597E15 from 2, complete sequence Length = 86973 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 tataaagacaaatattttg 86 ||||||||||||||||||| Sbjct: 70137 tataaagacaaatattttg 70155
>gb|AF144710.2| Candida albicans NOT4p (NOT4) gene, complete cds Length = 2243 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 agacaaatattttggacaa 91 ||||||||||||||||||| Sbjct: 864 agacaaatattttggacaa 882
>dbj|AP004757.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652D10 Length = 156744 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 tataaagacaaatattttg 86 ||||||||||||||||||| Sbjct: 103597 tataaagacaaatattttg 103615
>emb|Z69664.1|CEK04D7 Caenorhabditis elegans Cosmid K04D7, complete sequence Length = 38799 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 ttttgctataaagacaaat 80 ||||||||||||||||||| Sbjct: 3418 ttttgctataaagacaaat 3436
>gb|AY140908.1| Candida albicans 3-keto reductase (ERG27) gene, complete cds Length = 1041 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 aaagacaaatattttggac 89 ||||||||||||||||||| Sbjct: 578 aaagacaaatattttggac 560
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 tgctataaagacaaatatt 83 ||||||||||||||||||| Sbjct: 91532 tgctataaagacaaatatt 91550
>gb|AE003803.4| Drosophila melanogaster chromosome 2R, section 47 of 73 of the complete sequence Length = 290783 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 83 tttggacaacctatttgat 101 ||||||||||||||||||| Sbjct: 258128 tttggacaacctatttgat 258110 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,316,048 Number of Sequences: 3902068 Number of extensions: 1316048 Number of successful extensions: 119613 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 119479 Number of HSP's gapped (non-prelim): 134 length of query: 124 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 103 effective length of database: 17,151,101,840 effective search space: 1766563489520 effective search space used: 1766563489520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)