Clone Name | rbah61h16 |
---|---|
Clone Library Name | barley_pub |
>IF3_THETN (Q8R9C2) Translation initiation factor IF-3| Length = 180 Score = 33.5 bits (75), Expect = 0.50 Identities = 21/75 (28%), Positives = 35/75 (46%) Frame = -3 Query: 450 PFLEDSSFEEHGVSRELEFVRTGSKKSVSVRLFGSQISMWSQLSSFLKRHASNLRVVSR* 271 P +ED F + ++F++ G K V++R G + + S LKR A LR Sbjct: 102 PNIEDHDFGVK-LKSAIKFLKDGDKVKVTIRFRGREAAHTSLAEDLLKRFAEELREYGNV 160 Query: 270 FIRSSLDGRSFNCIL 226 S+DGR+ ++ Sbjct: 161 EKAPSMDGRNMMMVI 175
>MATK_CYPCL (Q6J9Z4) Maturase K (Intron maturase)| Length = 516 Score = 31.6 bits (70), Expect = 1.9 Identities = 24/86 (27%), Positives = 40/86 (46%) Frame = -3 Query: 534 PHDEVPEVINYLLRGWLKNVESEGTVDLPFLEDSSFEEHGVSRELEFVRTGSKKSVSVRL 355 PH E++ +L+ W+K+V S + L F E F S++ + + KK L Sbjct: 163 PHPIHLEILVQILQCWIKDVPSLHLLRLLFHEYHYFNSLITSKKSIYAFSRIKKRFLWFL 222 Query: 354 FGSQISMWSQLSSFLKRHASNLRVVS 277 + S + L FL++ +S LR S Sbjct: 223 YNSYVYECEYLFHFLRKQSSYLRSTS 248
>MATK_PHATN (Q9GHB8) Maturase K (Intron maturase)| Length = 516 Score = 31.2 bits (69), Expect = 2.5 Identities = 23/86 (26%), Positives = 42/86 (48%) Frame = -3 Query: 534 PHDEVPEVINYLLRGWLKNVESEGTVDLPFLEDSSFEEHGVSRELEFVRTGSKKSVSVRL 355 PH E++ +L+ W+K+V S + L F E + S++ +V + KK + L Sbjct: 162 PHPIHLEILVQILQCWIKDVPSLHFLRLLFHEYHNLNSILTSKKSIYVFSKRKKRLFWFL 221 Query: 354 FGSQISMWSQLSSFLKRHASNLRVVS 277 S + L F+++ +S LR +S Sbjct: 222 HNSYVYECEYLFLFIRKQSSYLRSIS 247
>SYR_HELPJ (Q9ZMB9) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 541 Score = 30.8 bits (68), Expect = 3.2 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 9/78 (11%) Frame = -3 Query: 591 VKQQVPEAPYYEISPAG---HCPHDEVPEVINYLLRGWLKNVESE------GTVDLPFLE 439 +K+Q P Y I A H ++ P +L+ LKN+ +E + LP Sbjct: 411 LKKQDSSNPIYYIHYANSRIHTMLEKSPFSKEEILQTPLKNLNAEEKYLLFSALSLPKAV 470 Query: 438 DSSFEEHGVSRELEFVRT 385 +SSFEE+G+ + E+ +T Sbjct: 471 ESSFEEYGLQKMCEYAKT 488
>MATK_ARIGL (Q4H1B9) Maturase K (Intron maturase)| Length = 522 Score = 30.8 bits (68), Expect = 3.2 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 9/108 (8%) Frame = -3 Query: 534 PHDEVPEVINYLLRGWLKNVESEGTVDLPFLEDSSFEEHGVSRELEFVRTGSKKSVSV-- 361 PH E++ +L+ W++ D+P L F H F+ T +K S S Sbjct: 162 PHPIHMEILVQILQCWIQ--------DVPLLHFLGFFLHEYHNWNSFLITKNKSSYSFSK 213 Query: 360 ---RLF----GSQISMWSQLSSFLKRHASNLRVVSR*FIRSSLDGRSF 238 RLF S +S + FL++H+S LR +S R+ L+ R F Sbjct: 214 ENKRLFRLVYNSYVSECEFVFVFLRKHSSYLRFIS---FRTFLERRYF 258
>MAT1_COCEL (Q9Y8C7) Mating-type protein MAT-1| Length = 378 Score = 30.4 bits (67), Expect = 4.2 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Frame = -3 Query: 588 KQQVPEAPYYEISPAGHCPHDEVPEVINYL-LRGWLKNVESEGTVDLPFLEDSSFEEHGV 412 K Q P ++ I CPH E+P+ YL L GW V EG L + DS G+ Sbjct: 122 KDQAPLDEFFGII----CPHLELPDPAYYLDLHGWSLGVNQEGDPTLLRIIDSKPASIGI 177
>MATK_ARPGI (Q8WJR9) Maturase K (Intron maturase) (Fragment)| Length = 509 Score = 30.4 bits (67), Expect = 4.2 Identities = 23/86 (26%), Positives = 41/86 (47%) Frame = -3 Query: 534 PHDEVPEVINYLLRGWLKNVESEGTVDLPFLEDSSFEEHGVSRELEFVRTGSKKSVSVRL 355 PH E++ +L+ W+K+V S + L F E + S++ +V + KK L Sbjct: 155 PHPIHLEILVQILQCWIKDVPSLHLLRLFFHEYHNLNSLITSKKSIYVFSKRKKRFFWFL 214 Query: 354 FGSQISMWSQLSSFLKRHASNLRVVS 277 S + + FL++ +S LR +S Sbjct: 215 HNSYVYECEYIFLFLRKQSSYLRSIS 240
>SPEE1_LEPIN (Q8EZP1) Probable spermidine synthase 1 (EC 2.5.1.16) (Putrescine| aminopropyltransferase 1) (SPDSY 1) Length = 498 Score = 30.0 bits (66), Expect = 5.5 Identities = 19/55 (34%), Positives = 27/55 (49%) Frame = -3 Query: 483 KNVESEGTVDLPFLEDSSFEEHGVSRELEFVRTGSKKSVSVRLFGSQISMWSQLS 319 KNVES VDL + F EHG+ +EL S K+ V + + +W + S Sbjct: 299 KNVESVTLVDLDSAITNLFSEHGILKEL---NEESLKNSKVTVINTDAFLWLEES 350
>ELMO3_HUMAN (Q96BJ8) Engulfment and cell motility protein 3| Length = 607 Score = 30.0 bits (66), Expect = 5.5 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Frame = -1 Query: 599 VSESSSRSQKH--PIMKSALPVTVLMMRFLRL*TICSE 492 V E+SSR KH P + ++ +TVL+ LR+ CSE Sbjct: 273 VLENSSREDKHECPFARGSIQLTVLLCELLRVGEPCSE 310
>PCRA_BACST (P56255) ATP-dependent DNA helicase pcrA (EC 3.6.1.-)| Length = 724 Score = 29.6 bits (65), Expect = 7.2 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = -3 Query: 441 EDSSFEEHGVSRELEFVRTGSKKSVSVRLFGSQISMWSQLSSFL 310 E S FE G ELE + G+K + ++ F SQ+ W+QL ++ Sbjct: 438 ELSLFEALG---ELEMIGLGAKAAGALAAFRSQLEQWTQLQEYV 478
>MATK_DRACH (Q8WJV2) Maturase K (Intron maturase)| Length = 517 Score = 29.3 bits (64), Expect = 9.4 Identities = 24/86 (27%), Positives = 40/86 (46%) Frame = -3 Query: 534 PHDEVPEVINYLLRGWLKNVESEGTVDLPFLEDSSFEEHGVSRELEFVRTGSKKSVSVRL 355 PH E++ +L+ W+K+V S + L F E + S++ V + KK L Sbjct: 163 PHPIHLEILVQILQCWIKDVPSLHLLRLFFHEYHNLNSLITSKKAIDVFSKRKKRFFWFL 222 Query: 354 FGSQISMWSQLSSFLKRHASNLRVVS 277 S + L FL++ +S LR +S Sbjct: 223 HNSYVYECEYLFLFLRKQSSYLRSIS 248
>RPOC2_PROMP (Q7V008) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1366 Score = 29.3 bits (64), Expect = 9.4 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = +2 Query: 383 PVLTNSSSLDTPCSSKLESSRNGRSTVPSDSTFLSHPR 496 P++++++ LD P LE++RN P+ S F + R Sbjct: 1299 PIVSSTAILDDPSDEDLETTRNRHGIDPTSSNFAAFAR 1336
>STB5L_BRARE (Q5SQE2) Syntaxin-binding protein 5-like| Length = 1159 Score = 29.3 bits (64), Expect = 9.4 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 10/60 (16%) Frame = -1 Query: 536 VLMMRFL----RL*TICSEDGLRMWSLRVQLTS--HFLKIPALK----NMGYRGSWSLLG 387 VL M+FL L T C++D L +WSLR +L + H LK + ++ ++ W +G Sbjct: 115 VLQMQFLINEGALVTACADDTLHLWSLRQRLPAILHSLKFNRERITFCHLPFQSKWLYVG 174
>DDX28_MOUSE (Q9CWT6) Probable ATP-dependent RNA helicase DDX28 (EC 3.6.1.-)| (Mitochondrial DEAD box protein 28) Length = 540 Score = 29.3 bits (64), Expect = 9.4 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%) Frame = -1 Query: 482 RMWSLRVQLTSHFL------KIPALKNMGYRGSWSLLGQGPRNQLVCGSSVPK 342 R W R HF + PAL+N+ RGS+ LG PR L +VP+ Sbjct: 95 RGWKHRRSRQDHFSIERVQQEAPALRNLSSRGSFVDLGLEPRVLLALQEAVPE 147
>MATK_PLETI (Q646L1) Maturase K (Intron maturase)| Length = 505 Score = 29.3 bits (64), Expect = 9.4 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 10/96 (10%) Frame = -3 Query: 534 PHDEVPEVINYLLRGWLKNVESEGTVDLPFLEDSSFEEHGVSRELEFVRTGSKKSVSV-- 361 PH PE++ LR W+K D PFL F H + KKS+S+ Sbjct: 152 PHPIRPEILVQTLRYWVK--------DAPFLHLLRFFLHEYFNWNSLIT--RKKSISIFS 201 Query: 360 --------RLFGSQISMWSQLSSFLKRHASNLRVVS 277 L+ S + + + FL+ +S+LR S Sbjct: 202 KSNPRLFLFLYNSHVCEYESILLFLRNQSSHLRSTS 237 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,654,551 Number of Sequences: 219361 Number of extensions: 1955650 Number of successful extensions: 4580 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4454 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4580 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)