>IF3_THETN (Q8R9C2) Translation initiation factor IF-3|
          Length = 180

 Score = 33.5 bits (75), Expect = 0.50
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = -3

Query: 450 PFLEDSSFEEHGVSRELEFVRTGSKKSVSVRLFGSQISMWSQLSSFLKRHASNLRVVSR* 271
           P +ED  F    +   ++F++ G K  V++R  G + +  S     LKR A  LR     
Sbjct: 102 PNIEDHDFGVK-LKSAIKFLKDGDKVKVTIRFRGREAAHTSLAEDLLKRFAEELREYGNV 160

Query: 270 FIRSSLDGRSFNCIL 226
               S+DGR+   ++
Sbjct: 161 EKAPSMDGRNMMMVI 175

>MATK_CYPCL (Q6J9Z4) Maturase K (Intron maturase)|
          Length = 516

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 24/86 (27%), Positives = 40/86 (46%)
 Frame = -3

Query: 534 PHDEVPEVINYLLRGWLKNVESEGTVDLPFLEDSSFEEHGVSRELEFVRTGSKKSVSVRL 355
           PH    E++  +L+ W+K+V S   + L F E   F     S++  +  +  KK     L
Sbjct: 163 PHPIHLEILVQILQCWIKDVPSLHLLRLLFHEYHYFNSLITSKKSIYAFSRIKKRFLWFL 222

Query: 354 FGSQISMWSQLSSFLKRHASNLRVVS 277
           + S +     L  FL++ +S LR  S
Sbjct: 223 YNSYVYECEYLFHFLRKQSSYLRSTS 248

>MATK_PHATN (Q9GHB8) Maturase K (Intron maturase)|
          Length = 516

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 23/86 (26%), Positives = 42/86 (48%)
 Frame = -3

Query: 534 PHDEVPEVINYLLRGWLKNVESEGTVDLPFLEDSSFEEHGVSRELEFVRTGSKKSVSVRL 355
           PH    E++  +L+ W+K+V S   + L F E  +      S++  +V +  KK +   L
Sbjct: 162 PHPIHLEILVQILQCWIKDVPSLHFLRLLFHEYHNLNSILTSKKSIYVFSKRKKRLFWFL 221

Query: 354 FGSQISMWSQLSSFLKRHASNLRVVS 277
             S +     L  F+++ +S LR +S
Sbjct: 222 HNSYVYECEYLFLFIRKQSSYLRSIS 247

>SYR_HELPJ (Q9ZMB9) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 541

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
 Frame = -3

Query: 591 VKQQVPEAPYYEISPAG---HCPHDEVPEVINYLLRGWLKNVESE------GTVDLPFLE 439
           +K+Q    P Y I  A    H   ++ P     +L+  LKN+ +E        + LP   
Sbjct: 411 LKKQDSSNPIYYIHYANSRIHTMLEKSPFSKEEILQTPLKNLNAEEKYLLFSALSLPKAV 470

Query: 438 DSSFEEHGVSRELEFVRT 385
           +SSFEE+G+ +  E+ +T
Sbjct: 471 ESSFEEYGLQKMCEYAKT 488

>MATK_ARIGL (Q4H1B9) Maturase K (Intron maturase)|
          Length = 522

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
 Frame = -3

Query: 534 PHDEVPEVINYLLRGWLKNVESEGTVDLPFLEDSSFEEHGVSRELEFVRTGSKKSVSV-- 361
           PH    E++  +L+ W++        D+P L    F  H       F+ T +K S S   
Sbjct: 162 PHPIHMEILVQILQCWIQ--------DVPLLHFLGFFLHEYHNWNSFLITKNKSSYSFSK 213

Query: 360 ---RLF----GSQISMWSQLSSFLKRHASNLRVVSR*FIRSSLDGRSF 238
              RLF     S +S    +  FL++H+S LR +S    R+ L+ R F
Sbjct: 214 ENKRLFRLVYNSYVSECEFVFVFLRKHSSYLRFIS---FRTFLERRYF 258

>MAT1_COCEL (Q9Y8C7) Mating-type protein MAT-1|
          Length = 378

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 588 KQQVPEAPYYEISPAGHCPHDEVPEVINYL-LRGWLKNVESEGTVDLPFLEDSSFEEHGV 412
           K Q P   ++ I     CPH E+P+   YL L GW   V  EG   L  + DS     G+
Sbjct: 122 KDQAPLDEFFGII----CPHLELPDPAYYLDLHGWSLGVNQEGDPTLLRIIDSKPASIGI 177

>MATK_ARPGI (Q8WJR9) Maturase K (Intron maturase) (Fragment)|
          Length = 509

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 23/86 (26%), Positives = 41/86 (47%)
 Frame = -3

Query: 534 PHDEVPEVINYLLRGWLKNVESEGTVDLPFLEDSSFEEHGVSRELEFVRTGSKKSVSVRL 355
           PH    E++  +L+ W+K+V S   + L F E  +      S++  +V +  KK     L
Sbjct: 155 PHPIHLEILVQILQCWIKDVPSLHLLRLFFHEYHNLNSLITSKKSIYVFSKRKKRFFWFL 214

Query: 354 FGSQISMWSQLSSFLKRHASNLRVVS 277
             S +     +  FL++ +S LR +S
Sbjct: 215 HNSYVYECEYIFLFLRKQSSYLRSIS 240

>SPEE1_LEPIN (Q8EZP1) Probable spermidine synthase 1 (EC 2.5.1.16) (Putrescine|
           aminopropyltransferase 1) (SPDSY 1)
          Length = 498

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -3

Query: 483 KNVESEGTVDLPFLEDSSFEEHGVSRELEFVRTGSKKSVSVRLFGSQISMWSQLS 319
           KNVES   VDL     + F EHG+ +EL      S K+  V +  +   +W + S
Sbjct: 299 KNVESVTLVDLDSAITNLFSEHGILKEL---NEESLKNSKVTVINTDAFLWLEES 350

>ELMO3_HUMAN (Q96BJ8) Engulfment and cell motility protein 3|
          Length = 607

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 599 VSESSSRSQKH--PIMKSALPVTVLMMRFLRL*TICSE 492
           V E+SSR  KH  P  + ++ +TVL+   LR+   CSE
Sbjct: 273 VLENSSREDKHECPFARGSIQLTVLLCELLRVGEPCSE 310

>PCRA_BACST (P56255) ATP-dependent DNA helicase pcrA (EC 3.6.1.-)|
          Length = 724

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 441 EDSSFEEHGVSRELEFVRTGSKKSVSVRLFGSQISMWSQLSSFL 310
           E S FE  G   ELE +  G+K + ++  F SQ+  W+QL  ++
Sbjct: 438 ELSLFEALG---ELEMIGLGAKAAGALAAFRSQLEQWTQLQEYV 478

>MATK_DRACH (Q8WJV2) Maturase K (Intron maturase)|
          Length = 517

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 24/86 (27%), Positives = 40/86 (46%)
 Frame = -3

Query: 534 PHDEVPEVINYLLRGWLKNVESEGTVDLPFLEDSSFEEHGVSRELEFVRTGSKKSVSVRL 355
           PH    E++  +L+ W+K+V S   + L F E  +      S++   V +  KK     L
Sbjct: 163 PHPIHLEILVQILQCWIKDVPSLHLLRLFFHEYHNLNSLITSKKAIDVFSKRKKRFFWFL 222

Query: 354 FGSQISMWSQLSSFLKRHASNLRVVS 277
             S +     L  FL++ +S LR +S
Sbjct: 223 HNSYVYECEYLFLFLRKQSSYLRSIS 248

>RPOC2_PROMP (Q7V008) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1366

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 383  PVLTNSSSLDTPCSSKLESSRNGRSTVPSDSTFLSHPR 496
            P++++++ LD P    LE++RN     P+ S F +  R
Sbjct: 1299 PIVSSTAILDDPSDEDLETTRNRHGIDPTSSNFAAFAR 1336

>STB5L_BRARE (Q5SQE2) Syntaxin-binding protein 5-like|
          Length = 1159

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
 Frame = -1

Query: 536 VLMMRFL----RL*TICSEDGLRMWSLRVQLTS--HFLKIPALK----NMGYRGSWSLLG 387
           VL M+FL     L T C++D L +WSLR +L +  H LK    +    ++ ++  W  +G
Sbjct: 115 VLQMQFLINEGALVTACADDTLHLWSLRQRLPAILHSLKFNRERITFCHLPFQSKWLYVG 174

>DDX28_MOUSE (Q9CWT6) Probable ATP-dependent RNA helicase DDX28 (EC 3.6.1.-)|
           (Mitochondrial DEAD box protein 28)
          Length = 540

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = -1

Query: 482 RMWSLRVQLTSHFL------KIPALKNMGYRGSWSLLGQGPRNQLVCGSSVPK 342
           R W  R     HF       + PAL+N+  RGS+  LG  PR  L    +VP+
Sbjct: 95  RGWKHRRSRQDHFSIERVQQEAPALRNLSSRGSFVDLGLEPRVLLALQEAVPE 147

>MATK_PLETI (Q646L1) Maturase K (Intron maturase)|
          Length = 505

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
 Frame = -3

Query: 534 PHDEVPEVINYLLRGWLKNVESEGTVDLPFLEDSSFEEHGVSRELEFVRTGSKKSVSV-- 361
           PH   PE++   LR W+K        D PFL    F  H        +    KKS+S+  
Sbjct: 152 PHPIRPEILVQTLRYWVK--------DAPFLHLLRFFLHEYFNWNSLIT--RKKSISIFS 201

Query: 360 --------RLFGSQISMWSQLSSFLKRHASNLRVVS 277
                    L+ S +  +  +  FL+  +S+LR  S
Sbjct: 202 KSNPRLFLFLYNSHVCEYESILLFLRNQSSHLRSTS 237


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,654,551
Number of Sequences: 219361
Number of extensions: 1955650
Number of successful extensions: 4580
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4580
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)