Clone Name | rbah61h16 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK066777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075L23, full insert sequence Length = 2082 Score = 194 bits (98), Expect = 2e-46 Identities = 236/282 (83%) Strand = Plus / Minus Query: 323 agttggctccacatggaaatttgggaaccgaagagccgcacactaactgatttcttggac 382 ||||||||||| | |||||||| ||||| ||||| |||||| || ||||| || || Sbjct: 1530 agttggctccataaggaaattttagaaccaaagagtcgcacatggacagatttttttgat 1471 Query: 383 cctgtcctaacaaactccagctccctcgataccccatgttcttcaaagctggaatcttca 442 ||| ||||||||| ||||||||||| ||||| |||| ||| || |||||| |||||| Sbjct: 1470 cctcccctaacaaattccagctcccttgatacaccattttcagcatagctgggttcttca 1411 Query: 443 agaaatgggaggtcaactgtaccctcagactccacattcttaagccatcctcggagcaaa 502 |||||||| | |||||| ||||||||| || |||||||| |||||||||| ||| || Sbjct: 1410 agaaatggaactgcaactgaaccctcagattcgacattctttagccatcctctgagtaag 1351 Query: 503 tagtttataacctcaggaacctcatcatgaggacagtgaccggcagggctgatttcataa 562 |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||| Sbjct: 1350 tagtttataacctcaggaacctcatcatgagggcagtgaccagcaggactgatttcgtaa 1291 Query: 563 tagggtgcttctgggacctgctgcttgactctgataccccaa 604 || |||| |||||| |||||||| || ||| | ||||||||| Sbjct: 1290 tacggtgattctggcacctgctgtttcactttaataccccaa 1249 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctaggcatcaacatgactactttacataaagaataatgaatacaatatacaattgaagc 242 ||||| |||||| ||||||||||| ||||||||||||||||||||||| | |||||| Sbjct: 1665 tctagacatcaaactgactactttaaataaagaataatgaatacaatatttgactgaagc 1606 Query: 243 ttctaccatc 252 ||||| |||| Sbjct: 1605 ttctaacatc 1596
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 105 bits (53), Expect = 2e-19 Identities = 158/193 (81%) Strand = Plus / Minus Query: 323 agttggctccacatggaaatttgggaaccgaagagccgcacactaactgatttcttggac 382 ||||||||||| | |||||||| ||||| ||||| |||||| || ||||| || || Sbjct: 14374050 agttggctccataaggaaattttagaaccaaagagtcgcacatggacagatttttttgat 14373991 Query: 383 cctgtcctaacaaactccagctccctcgataccccatgttcttcaaagctggaatcttca 442 ||| ||||||||| ||||||||||| ||||| |||| ||| || |||||| |||||| Sbjct: 14373990 cctcccctaacaaattccagctcccttgatacaccattttcagcatagctgggttcttca 14373931 Query: 443 agaaatgggaggtcaactgtaccctcagactccacattcttaagccatcctcggagcaaa 502 |||||||| | |||||| ||||||||| || |||||||| |||||||||| ||| || Sbjct: 14373930 agaaatggaactgcaactgaaccctcagattcgacattctttagccatcctctgagtaag 14373871 Query: 503 tagtttataacct 515 ||||||||||||| Sbjct: 14373870 tagtttataacct 14373858 Score = 97.6 bits (49), Expect = 4e-17 Identities = 82/93 (88%) Strand = Plus / Minus Query: 512 acctcaggaacctcatcatgaggacagtgaccggcagggctgatttcataatagggtgct 571 ||||||||||||||||||||||| |||||||| ||||| |||||||| ||||| |||| | Sbjct: 14372552 acctcaggaacctcatcatgagggcagtgaccagcaggactgatttcgtaatacggtgat 14372493 Query: 572 tctgggacctgctgcttgactctgataccccaa 604 ||||| |||||||| || ||| | ||||||||| Sbjct: 14372492 tctggcacctgctgtttcactttaataccccaa 14372460 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctaggcatcaacatgactactttacataaagaataatgaatacaatatacaattgaagc 242 ||||| |||||| ||||||||||| ||||||||||||||||||||||| | |||||| Sbjct: 14374185 tctagacatcaaactgactactttaaataaagaataatgaatacaatatttgactgaagc 14374126 Query: 243 ttctaccatc 252 ||||| |||| Sbjct: 14374125 ttctaacatc 14374116
>dbj|AP003574.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0526E12 Length = 150872 Score = 105 bits (53), Expect = 2e-19 Identities = 158/193 (81%) Strand = Plus / Minus Query: 323 agttggctccacatggaaatttgggaaccgaagagccgcacactaactgatttcttggac 382 ||||||||||| | |||||||| ||||| ||||| |||||| || ||||| || || Sbjct: 101925 agttggctccataaggaaattttagaaccaaagagtcgcacatggacagatttttttgat 101866 Query: 383 cctgtcctaacaaactccagctccctcgataccccatgttcttcaaagctggaatcttca 442 ||| ||||||||| ||||||||||| ||||| |||| ||| || |||||| |||||| Sbjct: 101865 cctcccctaacaaattccagctcccttgatacaccattttcagcatagctgggttcttca 101806 Query: 443 agaaatgggaggtcaactgtaccctcagactccacattcttaagccatcctcggagcaaa 502 |||||||| | |||||| ||||||||| || |||||||| |||||||||| ||| || Sbjct: 101805 agaaatggaactgcaactgaaccctcagattcgacattctttagccatcctctgagtaag 101746 Query: 503 tagtttataacct 515 ||||||||||||| Sbjct: 101745 tagtttataacct 101733 Score = 97.6 bits (49), Expect = 4e-17 Identities = 82/93 (88%) Strand = Plus / Minus Query: 512 acctcaggaacctcatcatgaggacagtgaccggcagggctgatttcataatagggtgct 571 ||||||||||||||||||||||| |||||||| ||||| |||||||| ||||| |||| | Sbjct: 100427 acctcaggaacctcatcatgagggcagtgaccagcaggactgatttcgtaatacggtgat 100368 Query: 572 tctgggacctgctgcttgactctgataccccaa 604 ||||| |||||||| || ||| | ||||||||| Sbjct: 100367 tctggcacctgctgtttcactttaataccccaa 100335 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctaggcatcaacatgactactttacataaagaataatgaatacaatatacaattgaagc 242 ||||| |||||| ||||||||||| ||||||||||||||||||||||| | |||||| Sbjct: 102060 tctagacatcaaactgactactttaaataaagaataatgaatacaatatttgactgaagc 102001 Query: 243 ttctaccatc 252 ||||| |||| Sbjct: 102000 ttctaacatc 101991
>dbj|AK068937.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003K12, full insert sequence Length = 1830 Score = 99.6 bits (50), Expect = 1e-17 Identities = 83/94 (88%) Strand = Plus / Minus Query: 511 aacctcaggaacctcatcatgaggacagtgaccggcagggctgatttcataatagggtgc 570 |||||||||||||||||||||||| |||||||| ||||| |||||||| ||||| |||| Sbjct: 1323 aacctcaggaacctcatcatgagggcagtgaccagcaggactgatttcgtaatacggtga 1264 Query: 571 ttctgggacctgctgcttgactctgataccccaa 604 |||||| |||||||| || ||| | ||||||||| Sbjct: 1263 ttctggcacctgctgtttcactttaataccccaa 1230
>dbj|AK062125.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-D07, full insert sequence Length = 395 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 183 tctaggcatcaacatgactactttacataaagaataatgaatacaatatacaattgaagc 242 ||||| |||||| ||||||||||| ||||||||||||||||||||||| | |||||| Sbjct: 203 tctagacatcaaactgactactttaaataaagaataatgaatacaatatttgactgaagc 144 Query: 243 ttctaccatc 252 ||||| |||| Sbjct: 143 ttctaacatc 134
>gb|AC040926.5| Homo sapiens chromosome 8, clone RP11-776K3, complete sequence Length = 204177 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 ataaagaataatgaatacaat 229 ||||||||||||||||||||| Sbjct: 80854 ataaagaataatgaatacaat 80874
>gb|L16622.1| Caenorhabditis elegans cosmid C02D5, complete sequence Length = 28735 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 cacatattcacatccacaaca 153 ||||||||||||||||||||| Sbjct: 6261 cacatattcacatccacaaca 6241
>ref|NM_105370.1| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT1G67000 mRNA, complete cds Length = 2614 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 tcaaagctggaatcttcaag 444 |||||||||||||||||||| Sbjct: 2588 tcaaagctggaatcttcaag 2607
>gb|AC095688.7| Rattus norvegicus 2 BAC CH230-9C20 (Children's Hospital Oakland Research Institute) complete sequence Length = 176590 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 cataaagaataatgaataca 227 |||||||||||||||||||| Sbjct: 40448 cataaagaataatgaataca 40467
>gb|AF251497.1| Cloning vector HKBS1, complete sequence Length = 12538 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 139 ttcacatccacaacaaatatttga 162 |||| ||||||||||||||||||| Sbjct: 3953 ttcaaatccacaacaaatatttga 3976
>gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genomic sequence, complete sequence Length = 90387 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 tcaaagctggaatcttcaag 444 |||||||||||||||||||| Sbjct: 33946 tcaaagctggaatcttcaag 33927
>gb|AF161269.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034K24, complete sequence Length = 142852 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 tactacacatattcacatcc 147 |||||||||||||||||||| Sbjct: 73023 tactacacatattcacatcc 73004
>emb|AL133325.20| Human DNA sequence from clone RP5-984P4 on chromosome 20 Contains the NKX2-2 gene for NK2 transcription factor related locus 2 (Drosophila), a hydroxysteroid (17-beta) dehydrogenase 12 (HSD17B12) pseudogene, the GSTM3P gene for glutathione S-transferase M3 pseudogene, a novel gene and two CpG islands, complete sequence Length = 160013 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 tacacatattcacatccaca 150 |||||||||||||||||||| Sbjct: 135075 tacacatattcacatccaca 135094
>emb|AL606508.12| Mouse DNA sequence from clone RP23-180B9 on chromosome 11 Contains the 3' end of a novel gene and a CpG island, complete sequence Length = 189315 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 atattcacatccacaacaaatatt 159 ||||||||||||| |||||||||| Sbjct: 143578 atattcacatccaaaacaaatatt 143555
>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 Length = 1824958 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 578 acctgctgcttgactctgat 597 |||||||||||||||||||| Sbjct: 1708641 acctgctgcttgactctgat 1708622
>gb|DP000049.1| Dasypus novemcinctus target 126 genomic scaffold Length = 405580 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 ttacataaagaataatgaat 224 |||||||||||||||||||| Sbjct: 274987 ttacataaagaataatgaat 274968
>gb|CP000043.1| Bacillus cereus E33L plasmid pE33L8, complete sequence Length = 8191 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 aatgaatacaatatacaatt 237 |||||||||||||||||||| Sbjct: 3705 aatgaatacaatatacaatt 3686
>gb|M57416.1|XENLUXAB Photorhabdus luminescens LuxD (luxD) gene, partial cds; luciferase alpha subunit (luxA) and luciferase beta subunit (luxB) genes, complete cds; and LuxE (luxE) gene, partial cds Length = 2553 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 139 ttcacatccacaacaaatatttga 162 |||| ||||||||||||||||||| Sbjct: 1265 ttcaaatccacaacaaatatttga 1242
>gb|M90093.1|XENLABCDEA Photorhabdus luminescens fatty acid reductase (luxC), acyltransferase (luxD), luciferase (luxA), luciferase (luxB), and luxE (luxE) genes, complete cds Length = 6960 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 139 ttcacatccacaacaaatatttga 162 |||| ||||||||||||||||||| Sbjct: 3868 ttcaaatccacaacaaatatttga 3845
>gb|M55977.1|XENLUXABB Photorhabdus luminescens LuxD (luxD) gene, partial cds; luciferase alpha subunit (luxA) and luciferase beta subunit (luxB) genes, complete cds; and LuxE (luxE) gene, partial cds Length = 2557 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 139 ttcacatccacaacaaatatttga 162 |||| ||||||||||||||||||| Sbjct: 1173 ttcaaatccacaacaaatatttga 1150
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 tactacacatattcacatcc 147 |||||||||||||||||||| Sbjct: 23313952 tactacacatattcacatcc 23313971
>emb|BX890578.6| Mouse DNA sequence from clone RP23-72P20 on chromosome X, complete sequence Length = 161519 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 579 cctgctgcttgactctgata 598 |||||||||||||||||||| Sbjct: 159371 cctgctgcttgactctgata 159390
>gb|AC164979.2| Mus musculus BAC clone RP23-244J23 from chromosome 16, complete sequence Length = 202286 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 ctgttgcttacctcaaactt 35 |||||||||||||||||||| Sbjct: 145322 ctgttgcttacctcaaactt 145341
>gb|AC109637.3| Homo sapiens BAC clone RP11-325A18 from 2, complete sequence Length = 17704 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 aaagaataatgaatacaata 230 |||||||||||||||||||| Sbjct: 17040 aaagaataatgaatacaata 17059
>gb|AC020547.7| Homo sapiens BAC clone RP11-134F3 from 2, complete sequence Length = 167739 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 aaagaataatgaatacaata 230 |||||||||||||||||||| Sbjct: 1336 aaagaataatgaatacaata 1355
>gb|AF241720.1| Penicillium sp. KCTC16087 small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 1351 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 actactttacataaagaata 218 |||||||||||||||||||| Sbjct: 67 actactttacataaagaata 48
>gb|AY962893.1| Transcriptional fusion vector pUC18-mini-Tn7T-Gm-lux, complete sequence Length = 11299 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 139 ttcacatccacaacaaatatttga 162 |||| ||||||||||||||||||| Sbjct: 5926 ttcaaatccacaacaaatatttga 5903
>gb|AF119222.1|AF119222 Oryza sativa BAC clone 1.H19, complete sequence Length = 77605 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 tactacacatattcacatcc 147 |||||||||||||||||||| Sbjct: 65923 tactacacatattcacatcc 65904
>gb|AF128457.1|AF128457 Oryza sativa subsp. indica BAC clone 16F19 php20725 region, complete sequence Length = 70311 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 tactacacatattcacatcc 147 |||||||||||||||||||| Sbjct: 58473 tactacacatattcacatcc 58454
>emb|CT027602.9| Mouse DNA sequence from clone RP24-359G24 on chromosome 16, complete sequence Length = 194283 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 ctgttgcttacctcaaactt 35 |||||||||||||||||||| Sbjct: 167895 ctgttgcttacctcaaactt 167914
>emb|AL163952.5|CNS05TBP Human chromosome 14 DNA sequence BAC R-1012E15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 196514 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 gcatcaacatgactacttta 207 |||||||||||||||||||| Sbjct: 173106 gcatcaacatgactacttta 173125
>emb|CR394552.9| Zebrafish DNA sequence from clone DKEYP-109B10 in linkage group 25, complete sequence Length = 196037 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 499 caaatagtttataacctcag 518 |||||||||||||||||||| Sbjct: 151226 caaatagtttataacctcag 151245
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 aaagaataatgaatacaata 230 |||||||||||||||||||| Sbjct: 2220951 aaagaataatgaatacaata 2220932
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 tactacacatattcacatcc 147 |||||||||||||||||||| Sbjct: 23623862 tactacacatattcacatcc 23623881
>emb|AL672069.10| Mouse DNA sequence from clone RP23-343O22 on chromosome X, complete sequence Length = 161147 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 579 cctgctgcttgactctgata 598 |||||||||||||||||||| Sbjct: 158999 cctgctgcttgactctgata 159018 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,441,927 Number of Sequences: 3902068 Number of extensions: 5441927 Number of successful extensions: 100748 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100562 Number of HSP's gapped (non-prelim): 183 length of query: 608 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 585 effective length of database: 17,143,297,704 effective search space: 10028829156840 effective search space used: 10028829156840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)