ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbah61h08 |
|---|---|
| Clone Library Name | barley_pub |
>RGA2_SOLBU (Q7XBQ9) Disease resistance protein RGA2 (RGA2-blb) (Blight| resistance protein RPI) Length = 970 Score = 35.8 bits (81), Expect = 0.098 Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 4/75 (5%) Frame = -1 Query: 603 AQLASLKILRIWKFPAIRSLPKDGLP--SSLQELDIKDCPAIKSLPKDGLP--SSLRKLE 436 A L +LK L+I A+ SLP++GL SSL EL ++ C +K LP +GL ++L L+ Sbjct: 880 ASLNALKSLKIQLCCALESLPEEGLEGLSSLTELFVEHCNMLKCLP-EGLQHLTTLTSLK 938 Query: 435 VCGGISEELKRQCCK 391 + G +L ++C K Sbjct: 939 IRG--CPQLIKRCEK 951 Score = 31.2 bits (69), Expect = 2.4 Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%) Frame = -1 Query: 597 LASLKILRIWKFPAIRSLPKD-GLPSSLQELDIKDCPAIKSLPKDGLP--SSLRKLEV 433 LA+LK L I + ++ LP ++L+ L I+ C A++SLP++GL SSL +L V Sbjct: 858 LANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLPEEGLEGLSSLTELFV 915
>DRL29_ARATH (Q9SZA7) Probable disease resistance protein At4g33300| Length = 832 Score = 35.0 bits (79), Expect = 0.17 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Frame = -1 Query: 603 AQLASLKILRIWKFPAIRSLPKD--GLPSSLQELDIKDCPAIKSLPKD-GLPSSLRKLEV 433 ++L +L+ILR++ P +++LP + LP L+ LDI C ++ LP++ G L K+++ Sbjct: 717 SKLQALEILRLYACPELKTLPGEICELP-GLKYLDISQCVSLSCLPEEIGKLKKLEKIDM 775 Query: 432 CGGISEELKRQCC 394 R+CC Sbjct: 776 ---------RECC 779
>RGA1_SOLBU (Q7XA42) Putative disease resistance protein RGA1 (RGA3-blb)| Length = 1025 Score = 32.0 bits (71), Expect = 1.4 Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%) Frame = -1 Query: 597 LASLKILRIWKFPAIRSLPKD-GLPSSLQELDIKDCPAIKSLPKDGLP--SSLRKLEV 433 LA+LK L+I F ++ LP ++L+ L + C A++SLP++G+ +SL +L V Sbjct: 913 LANLKYLKISFFRNLKELPTSLASLNALKSLKFEFCDALESLPEEGVKGLTSLTELSV 970
>DRL11_ARATH (Q94HW3) Probable disease resistance protein RDL6/RF9| Length = 1049 Score = 30.8 bits (68), Expect = 3.2 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -1 Query: 519 LQELDIKDCPAIKSLPKDGLPSSLRKLEV 433 L LDI+DC +K LP + LPS L + + Sbjct: 852 LHTLDIRDCRKLKQLPDEHLPSHLTSISL 880
>DRL21_ARATH (Q9LRR5) Putative disease resistance protein At3g14460| Length = 1424 Score = 30.8 bits (68), Expect = 3.2 Identities = 10/23 (43%), Positives = 19/23 (82%) Frame = -1 Query: 522 SLQELDIKDCPAIKSLPKDGLPS 454 +L+ L+I+DCP +++ P+ GLP+ Sbjct: 1216 ALESLEIRDCPNLETFPQGGLPT 1238 Score = 30.8 bits (68), Expect = 3.2 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 4/51 (7%) Frame = -1 Query: 591 SLKILRIWKFPA----IRSLPKDGLPSSLQELDIKDCPAIKSLPKDGLPSS 451 SL+IL+ + P I +DG+ LQ+L I+ CP+++ +GLPSS Sbjct: 841 SLQILKFYGMPRWDEWICPELEDGIFPCLQKLIIQRCPSLRKKFPEGLPSS 891 Score = 30.4 bits (67), Expect = 4.1 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 25/76 (32%) Frame = -1 Query: 591 SLKILRIWKFPAIRSLPKDGLPS-------------------------SLQELDIKDCPA 487 +L+ L I P + + P+ GLP+ SL L I CP Sbjct: 1216 ALESLEIRDCPNLETFPQGGLPTPKLSSMLLSNCKKLQALPEKLFGLTSLLSLFIIKCPE 1275 Query: 486 IKSLPKDGLPSSLRKL 439 I+++P G PS+LR L Sbjct: 1276 IETIPGGGFPSNLRTL 1291
>Y396_HELPJ (Q9ZKF3) Hypothetical protein jhp_0985| Length = 616 Score = 30.4 bits (67), Expect = 4.1 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 5/48 (10%) Frame = -1 Query: 591 SLKILR-IWK----FPAIRSLPKDGLPSSLQELDIKDCPAIKSLPKDG 463 SLKIL+ +W FP + PKD + +E+++ D P +K+ KDG Sbjct: 105 SLKILKDLWDLRHVFPKKTARPKDLITKQDKEVNLWDLPVLKTWEKDG 152
>DRL42_ARATH (Q9FKZ1) Probable disease resistance protein At5g66900| Length = 809 Score = 29.6 bits (65), Expect = 7.0 Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 5/63 (7%) Frame = -1 Query: 597 LASLKILRIWKFPAIRSLPK--DGLPSSLQELDIKDCPAIKSLPKD-GLPSSLRKLEV-- 433 L+ L++LR+ + LP+ +GL S+L+ LDI C ++ LP++ G +L+K+ + Sbjct: 696 LSRLEVLRLCSSMNLSELPEATEGL-SNLRFLDISHCLGLRKLPQEIGKLQNLKKISMRK 754 Query: 432 CGG 424 C G Sbjct: 755 CSG 757
>DRL39_ARATH (Q9LVT1) Putative disease resistance protein At5g47280| Length = 623 Score = 29.3 bits (64), Expect = 9.2 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = -1 Query: 597 LASLKILRIWKFPAIRSLPKD-GLPSSLQELDIKDCPAIKSLP 472 + SL + I P I+ LPK+ +LQ L + CP +KSLP Sbjct: 486 ITSLNSISITNCPNIKELPKNISKLQALQLLRLYACPELKSLP 528
>Y924_HELPY (O25581) Probable tautomerase HP0924 (EC 5.3.2.-)| Length = 67 Score = 29.3 bits (64), Expect = 9.2 Identities = 14/42 (33%), Positives = 28/42 (66%) Frame = -1 Query: 486 IKSLPKDGLPSSLRKLEVCGGISEELKRQCCKLKGTIPIIID 361 IK +P++G P++ +K ++ G+S+ + + K K +I +IID Sbjct: 5 IKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIID 46
>Y858_HELPJ (Q9ZKS7) Probable tautomerase jhp_0858 (EC 5.3.2.-)| Length = 67 Score = 29.3 bits (64), Expect = 9.2 Identities = 14/42 (33%), Positives = 28/42 (66%) Frame = -1 Query: 486 IKSLPKDGLPSSLRKLEVCGGISEELKRQCCKLKGTIPIIID 361 IK +P++G P++ +K ++ G+S+ + + K K +I +IID Sbjct: 5 IKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIID 46
>TMVRN_NICGU (Q40392) TMV resistance protein N| Length = 1144 Score = 29.3 bits (64), Expect = 9.2 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 6/39 (15%) Frame = -1 Query: 531 LPSS------LQELDIKDCPAIKSLPKDGLPSSLRKLEV 433 LPSS LQ LD+KDC + LP+ LP L +L V Sbjct: 873 LPSSIAQLGALQSLDLKDCQRLTQLPE--LPPELNELHV 909 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,590,199 Number of Sequences: 219361 Number of extensions: 1693776 Number of successful extensions: 4924 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4695 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4921 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
