ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ507097.1|HVU507097 Hordeum vulgare mRNA for NBS-LRR diseas... 1035 0.0
2emb|AJ507091.1|HVU507091 Hordeum vulgare partial mRNA for NBS-LR... 704 0.0
3emb|AJ507088.1|HVU507088 Hordeum vulgare partial mRNA for NBS-LR... 412 e-112
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
5dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
6dbj|AK100253.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 6e-10
7dbj|AK099567.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 6e-10
8dbj|AK069923.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 9e-06
9gb|AF402959.1| Oryza sativa chromosome 4 clones V17 and 214, gen... 52 0.002
10ref|XM_473970.1| Oryza sativa (japonica cultivar-group), predic... 52 0.002
11emb|AL606669.4|OSJN00106 Oryza sativa genomic DNA, chromosome 4,... 52 0.002
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
13dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
14dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
15gb|AC027104.6| Homo sapiens chromosome 15, clone RP11-326L17, co... 50 0.009
16gb|AC135995.7| Homo sapiens chromosome 15, clone RP13-608F4, com... 44 0.53
17gb|AC135735.2| Homo sapiens chromosome 15, clone RP11-1270F20, c... 44 0.53
18gb|AC127482.10| Homo sapiens chromosome 15, clone CTD-2547M4, co... 44 0.53
19gb|AC011295.3| Homo sapiens BAC clone RP11-96J23 from 15, comple... 44 0.53
20gb|AC010724.6|AC010724 Homo sapiens BAC clone RP11-152F13 from 1... 44 0.53
21gb|AC121510.10| Mus musculus chromosome 19, clone RP24-371N19, c... 42 2.1
22gb|AC147478.2| Pan troglodytes BAC clone CH251-571L4 from Y, com... 42 2.1
23gb|AC147131.2| Pan troglodytes BAC clone CH251-403A11 from Y, co... 42 2.1
24gb|AC117805.8| Mus musculus chromosome 19, clone RP24-565L9, com... 42 2.1
25emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome 42 2.1
26gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 42 2.1
27gb|AY652746.1| Ehrlichia ruminantium strain Gardel Map1 cluster,... 42 2.1
28gb|AC023274.2|AC023274 Homo sapiens clone RP11-307L15, complete ... 42 2.1
29gb|AC007562.4|AC007562 Homo sapiens BAC clone RP11-497C14 from Y... 42 2.1
30ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 42 2.1
31gb|AC162902.4| Mus musculus BAC clone RP23-448D23 from chromosom... 40 8.2
32gb|AC164641.5| Mus musculus BAC clone RP23-393F10 from chromosom... 40 8.2
33gb|AC107770.10| Mus musculus chromosome 5, clone RP23-114M24, co... 40 8.2
34emb|BX901925.10| Zebrafish DNA sequence from clone DKEYP-86C11 i... 40 8.2
35emb|Z97632.3|HS196E23 Human DNA sequence from clone RP1-196E23 o... 40 8.2
36gb|AC125576.4| Rattus norvegicus 18 BAC CH230-9F9 (Children's Ho... 40 8.2
37emb|BX571819.6| Zebrafish DNA sequence from clone CH211-105H3 in... 40 8.2
38gb|AC099772.3| Mus Musculus Chromosome 5 RP23-319P12 Strain C57B... 40 8.2
39emb|BX248323.8| Zebrafish DNA sequence from clone CH211-199J6, c... 40 8.2
40dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
41gb|AC078815.22| Homo sapiens 12q BAC RP11-766N7 (Roswell Park Ca... 40 8.2
42gb|AC074286.5| Homo sapiens BAC clone RP11-83I14 from 2, complet... 40 8.2
43emb|BX004975.9| Zebrafish DNA sequence from clone DKEY-14B16, co... 40 8.2
44gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
45emb|AL713909.5|CNS07YQ9 Oryza sativa chromosome 12, . Partial se... 40 8.2
46emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb... 40 8.2
47gb|AC000115.1|HSAC000115 Human BAC clone GS188P18, complete sequ... 40 8.2
48emb|AL683876.5| Mouse DNA sequence from clone RP23-100E6 on chro... 40 8.2
49gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome 40 8.2
50emb|AL772406.4| Mouse DNA sequence from clone RP23-321K16 on chr... 40 8.2
51emb|AL691440.8| Mouse DNA sequence from clone RP23-231F8 on chro... 40 8.2 
>emb|AJ507097.1|HVU507097 Hordeum vulgare mRNA for NBS-LRR disease resistance protein homologue
            (rga S-9217 gene)
          Length = 5145

 Score = 1035 bits (522), Expect = 0.0
 Identities = 531/534 (99%)
 Strand = Plus / Minus

                                                                        
Query: 70   gcgactagaagatgagagatctccaaggtccataagaatgtgcaagtccaagacagatcc 129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5021 gcgactagaagatgagagatctccaaggtccataagaatgtgcaagtccaagacagatcc 4962

                                                                        
Query: 130  catatttatgtaggagataccacccaaggccatggcatccgaactgctcgtgtatgcaaa 189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4961 catatttatgtaggagataccacccaaggccatggcatccgaactgctcgtgtatgcaaa 4902

                                                                        
Query: 190  aaacttcaaggataacagcacttcaacaacttcatgccagaggccagtttagtaatggat 249
            |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 4901 aaacttcaaggataacagcacttctataacttcatgccagaggccagtttagtaatggat 4842

                                                                        
Query: 250  ggattctatagtctgggaccttgtgttcttggatagagagagaactggatcaacaaggct 309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4841 ggattctatagtctgggaccttgtgttcttggatagagagagaactggatcaacaaggct 4782

                                                                        
Query: 310  aggctagaagaatgtacaaatccaagaagacctcttggattagccttagtagtctatgat 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4781 aggctagaagaatgtacaaatccaagaagacctcttggattagccttagtagtctatgat 4722

                                                                        
Query: 370  tattggaatggttccttttaacttgcagcactgccttttaagctcctcgctgatgccacc 429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4721 tattggaatggttccttttaacttgcagcactgccttttaagctcctcgctgatgccacc 4662

                                                                        
Query: 430  acaaacttctaatttccgtagtgaacttggcaggccgtccttgggcagagatttgatggc 489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4661 acaaacttctaatttccgtagtgaacttggcaggccgtccttgggcagagatttgatggc 4602

                                                                        
Query: 490  aggacagtctttgatatctagttcttgcagagaacttggcagtccgtccttgggcagcga 549
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4601 aggacagtctttgatatctagttcttgcagagaacttggcagtccgtccttgggcagcaa 4542

                                                                  
Query: 550  cctgatggctggaaacttccaaatccgtaatatcttgaggctggcaagctgggc 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4541 cctgatggctggaaacttccaaatccgtaatatcttgaggctggcaagctgggc 4488
to top
>emb|AJ507091.1|HVU507091 Hordeum vulgare partial mRNA for NBS-LRR disease resistance protein
            homologue (rga S-226 gene)
          Length = 5451

 Score =  704 bits (355), Expect = 0.0
 Identities = 405/419 (96%), Gaps = 2/419 (0%)
 Strand = Plus / Minus

                                                                        
Query: 129  ccatatttatgtaggagataccacccaaggccatggcatccgaactgctcgtgt-atgca 187
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 5255 ccatatttatgtaggagataccacccaaggccatggcatccgaactgctcgtgttatgca 5196

                                                                        
Query: 188  aaaaacttcaaggataacagcacttcaacaacttcatgccagaggccagtttagtaatgg 247
            |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 5195 aaaaacttcaaggataacagcacttctacaacttcatgccagaggccggtttagtaatgg 5136

                                                                        
Query: 248  atggattctatagtctgggaccttgtgttcttggatagagagagaactggatcaacaagg 307
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5135 atggattctatagtctgggaccttctgttcttggatagagagagaactggatcaacaagg 5076

                                                                        
Query: 308  ctaggctagaagaatgtacaaatccaagaagacctcttggattagccttagtagtctatg 367
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5075 ctaggctagaa-aatgtacaaatccaagaagacctcttggattagccttagtagtctatg 5017

                                                                        
Query: 368  attattggaatggttccttttaacttgcagcactgccttttaagctcctcgctgatgcca 427
            |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 5016 attattggaatggttccttttaacttgcggcactgccttttaagttcctcgctgatgcca 4957

                                                                        
Query: 428  ccacaaacttctaatttccgtagtgaacttggcaggccgtccttgggcagagatttgatg 487
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4956 tcacaaacttctaatttccgtagtgaacttggcaggccgtccttgggcagagatttgatg 4897

                                                                       
Query: 488  gcaggacagtctttgatatctagttcttgcagagaacttggcagtccgtccttgggcag 546
            ||||| |||| | |||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 4896 gcagggcagtttctgatctctagttcttgtagagaacttggcaggccgtccttgggcag 4838



 Score =  264 bits (133), Expect = 3e-67
 Identities = 151/157 (96%)
 Strand = Plus / Minus

                                                                        
Query: 447  gtagtgaacttggcaggccgtccttgggcagagatttgatggcaggacagtctttgatat 506
            |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4868 gtagagaacttggcaggccgtccttgggcagagatttgatggcaggacagactttgatat 4809

                                                                        
Query: 507  ctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctggaaact 566
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 4808 ctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctggacacc 4749

                                                 
Query: 567  tccaaatccgtaatatcttgaggctggcaagctgggc 603
             ||||||||||||||||||||||||||||||| ||||
Sbjct: 4748 accaaatccgtaatatcttgaggctggcaagccgggc 4712



 Score =  103 bits (52), Expect = 7e-19
 Identities = 59/60 (98%), Gaps = 1/60 (1%)
 Strand = Plus / Minus

                                                                        
Query: 70   gcgactagaagatgagagatctccaaggtccataagaatgtgcaagtccaagacagatcc 129
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5446 gcgactagaagatgagagatctccaag-tccataagaatgtgcaagtccaagacagatcc 5388
to top
>emb|AJ507088.1|HVU507088 Hordeum vulgare partial mRNA for NBS-LRR disease resistance protein
            homologue (rga S-112 gene)
          Length = 4654

 Score =  412 bits (208), Expect = e-112
 Identities = 247/260 (95%)
 Strand = Plus / Minus

                                                                        
Query: 343  cttggattagccttagtagtctatgattattggaatggttccttttaacttgcagcactg 402
            |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 4453 cttggattagccttagtagtctttgattattggaatggttccttttaacttgcggcactg 4394

                                                                        
Query: 403  ccttttaagctcctcgctgatgccaccacaaacttctaatttccgtagtgaacttggcag 462
            |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 4393 ccttttaagctcctcgctgatggcaccacaaacttctaatttccgtagtgaacttgacag 4334

                                                                        
Query: 463  gccgtccttgggcagagatttgatggcaggacagtctttgatatctagttcttgcagaga 522
            ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4333 gccgtccctgggcagagatttgatggcaggacagtctttgatctctagttcttgcagaga 4274

                                                                        
Query: 523  acttggcagtccgtccttgggcagcgacctgatggctggaaacttccaaatccgtaatat 582
            ||||||||||||||||||||||||||| |||||| ||| | |   |||||||||||||||
Sbjct: 4273 acttggcagtccgtccttgggcagcgagctgatgtctgtacaacaccaaatccgtaatat 4214

                                
Query: 583  cttgaggctggcaagctggg 602
            ||||||||||||||||||||
Sbjct: 4213 cttgaggctggcaagctggg 4194



 Score =  303 bits (153), Expect = 4e-79
 Identities = 163/165 (98%), Gaps = 1/165 (0%)
 Strand = Plus / Minus

                                                                        
Query: 70   gcgactagaagatgagagatctccaaggtccataagaatgtgcaagtccaagacagatcc 129
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4627 gcgactagaagatgagagatctccaag-tccataagaatgtgcaagtccaagacagatcc 4569

                                                                        
Query: 130  catatttatgtaggagataccacccaaggccatggcatccgaactgctcgtgtatgcaaa 189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4568 catatttatgtaggagataccacccaaggccatggcatccgaactgctcgtgtatgcaaa 4509

                                                         
Query: 190  aaacttcaaggataacagcacttcaacaacttcatgccagaggcc 234
            |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4508 aaacttcaaggataacagcacttctacaacttcatgccagaggcc 4464
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                            
Query: 361      gtctatgattattggaatggttccttttaacttgcagcactgccttttaagctcctcgct 420
                |||| |||| ||||||||||||||| ||| ||||| |||||||||||| |||||||||||
Sbjct: 29425262 gtctttgatgattggaatggttcctcttagcttgcggcactgccttttgagctcctcgct 29425321

                 
Query: 421      g 421
                |
Sbjct: 29425322 g 29425322



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 371      attggaatggttccttttaacttgcagcactgccttttaagctcctcgct 420
                |||| ||| |||||||||| ||||| |||||||||||| ||||| |||||
Sbjct: 22971590 attgcaattgttccttttagcttgcggcactgccttttgagctcttcgct 22971639



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                             
Query: 374      ggaatggttccttttaacttgcagcactgccttttaagctcctcg 418
                ||||| |||||| ||| ||||| |||||||||||| |||||||||
Sbjct: 29403345 ggaattgttcctcttagcttgcggcactgccttttgagctcctcg 29403389



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                          
Query: 505      atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562
                ||||||| ||| ||| ||||| || || ||| ||||||||||||| | ||||||||||
Sbjct: 29381469 atctagtacttccagtgaactcggaaggccgcccttgggcagcgaacggatggctgga 29381526



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                             
Query: 374      ggaatggttccttttaacttgcagcactgccttttaagctcctcg 418
                |||||||||||| ||| ||| | |||||| ||||| |||||||||
Sbjct: 29411398 ggaatggttcctcttagcttacggcactgtcttttgagctcctcg 29411442
to top
>dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0621D05
          Length = 180250

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                          
Query: 361    gtctatgattattggaatggttccttttaacttgcagcactgccttttaagctcctcgct 420
              |||| |||| ||||||||||||||| ||| ||||| |||||||||||| |||||||||||
Sbjct: 136143 gtctttgatgattggaatggttcctcttagcttgcggcactgccttttgagctcctcgct 136202

               
Query: 421    g 421
              |
Sbjct: 136203 g 136203



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                           
Query: 374    ggaatggttccttttaacttgcagcactgccttttaagctcctcg 418
              ||||| |||||| ||| ||||| |||||||||||| |||||||||
Sbjct: 114226 ggaattgttcctcttagcttgcggcactgccttttgagctcctcg 114270



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                       
Query: 505   atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562
             ||||||| ||| ||| ||||| || || ||| ||||||||||||| | ||||||||||
Sbjct: 92350 atctagtacttccagtgaactcggaaggccgcccttgggcagcgaacggatggctgga 92407



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                           
Query: 374    ggaatggttccttttaacttgcagcactgccttttaagctcctcg 418
              |||||||||||| ||| ||| | |||||| ||||| |||||||||
Sbjct: 122279 ggaatggttcctcttagcttacggcactgtcttttgagctcctcg 122323
to top
>dbj|AK100253.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061C20, full
            insert sequence
          Length = 2552

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                        
Query: 361  gtctatgattattggaatggttccttttaacttgcagcactgccttttaagctcctcgct 420
            |||| |||| ||||||||||||||| ||| ||||| |||||||||||| |||||||||||
Sbjct: 1356 gtctttgatgattggaatggttcctcttagcttgcggcactgccttttgagctcctcgct 1297

             
Query: 421  g 421
            |
Sbjct: 1296 g 1296
to top
>dbj|AK099567.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034N02, full
            insert sequence
          Length = 4016

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                        
Query: 361  gtctatgattattggaatggttccttttaacttgcagcactgccttttaagctcctcgct 420
            |||| |||| ||||||||||||||| ||| ||||| |||||||||||| |||||||||||
Sbjct: 3180 gtctttgatgattggaatggttcctcttagcttgcggcactgccttttgagctcctcgct 3121

             
Query: 421  g 421
            |
Sbjct: 3120 g 3120
to top
>dbj|AK069923.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035K08, full
           insert sequence
          Length = 4256

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                     
Query: 505 atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562
           ||||||||||||||| ||||| || || ||  ||||||||||||||||||||| ||||
Sbjct: 737 atctagttcttgcagtgaactggggaggccacccttgggcagcgacctgatggatgga 680



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                      
Query: 505  atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562
            ||||||||||||||| ||||| || || ||  ||||||||||||||| ||||| ||||
Sbjct: 1976 atctagttcttgcagtgaactggggaggccacccttgggcagcgaccggatggatgga 1919
to top
>gb|AF402959.1| Oryza sativa chromosome 4 clones V17 and 214, genomic sequence
          Length = 64224

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 505   atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562
             ||||||||||||||| ||||| || || ||  ||||||||||||||| ||||| ||||
Sbjct: 53929 atctagttcttgcagtgaactggggaggccacccttgggcagcgaccggatggatgga 53872
to top
>ref|XM_473970.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 6342

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                      
Query: 505  atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562
            ||||||||||||||| ||||| || || ||  ||||||||||||||| ||||| ||||
Sbjct: 5343 atctagttcttgcagtgaactggggaggccacccttgggcagcgaccggatggatgga 5286



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                      
Query: 505  atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562
            ||||||||||||||| ||||| || || ||  ||||||||||||||| ||||| ||||
Sbjct: 4575 atctagttcttgcagtgaactggggaggccacccttgggcagcgaccggatggatgga 4518
to top
>emb|AL606669.4|OSJN00106 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060E08,
             complete sequence
          Length = 166951

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 505   atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562
             ||||||||||||||| ||||| || || ||  ||||||||||||||| ||||| ||||
Sbjct: 68992 atctagttcttgcagtgaactggggaggccacccttgggcagcgaccggatggatgga 68935



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 505   atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562
             ||||||||||||||| ||||| || || ||  ||||||||||||||| ||||| ||||
Sbjct: 66129 atctagttcttgcagtgaactggggaggccacccttgggcagcgaccggatggatgga 66072
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                          
Query: 505      atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562
                ||||||||||||||| ||||| || || ||  ||||||||||||||| ||||| ||||
Sbjct: 31896126 atctagttcttgcagtgaactggggaggccacccttgggcagcgaccggatggatgga 31896069



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                          
Query: 505      atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562
                ||||||||||||||| ||||| || || ||  ||||||||||||||| ||||| ||||
Sbjct: 31893263 atctagttcttgcagtgaactggggaggccacccttgggcagcgaccggatggatgga 31893206
to top
>dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0502H06
          Length = 165630

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                
Query: 371    attggaatggttccttttaacttgcagcactgccttttaagctcctcgct 420
              |||| ||| |||||||||| ||||| |||||||||||| ||||| |||||
Sbjct: 146412 attgcaattgttccttttagcttgcggcactgccttttgagctcttcgct 146461
to top
>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0652A05
          Length = 150455

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 371   attggaatggttccttttaacttgcagcactgccttttaagctcctcgct 420
             |||| ||| |||||||||| ||||| |||||||||||| ||||| |||||
Sbjct: 38075 attgcaattgttccttttagcttgcggcactgccttttgagctcttcgct 38124
to top
>gb|AC027104.6| Homo sapiens chromosome 15, clone RP11-326L17, complete sequence
          Length = 180202

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 359   tagtctatgattattggaatggttccttt 387
             |||||||| ||||||||||||||||||||
Sbjct: 74634 tagtctatcattattggaatggttccttt 74606
to top
>gb|AC135995.7| Homo sapiens chromosome 15, clone RP13-608F4, complete sequence
          Length = 157246

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 362    tctatgattattggaatggttccttt 387
              ||||| ||||||||||||||||||||
Sbjct: 125068 tctatcattattggaatggttccttt 125043
to top
>gb|AC135735.2| Homo sapiens chromosome 15, clone RP11-1270F20, complete sequence
          Length = 175310

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 362  tctatgattattggaatggttccttt 387
            ||||| ||||||||||||||||||||
Sbjct: 8289 tctatcattattggaatggttccttt 8314
to top
>gb|AC127482.10| Homo sapiens chromosome 15, clone CTD-2547M4, complete sequence
          Length = 193680

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 362  tctatgattattggaatggttccttt 387
            ||||| ||||||||||||||||||||
Sbjct: 9463 tctatcattattggaatggttccttt 9488
to top
>gb|AC011295.3| Homo sapiens BAC clone RP11-96J23 from 15, complete sequence
          Length = 148698

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 362  tctatgattattggaatggttccttt 387
            ||||| ||||||||||||||||||||
Sbjct: 9017 tctatcattattggaatggttccttt 8992
to top
>gb|AC010724.6|AC010724 Homo sapiens BAC clone RP11-152F13 from 15, complete sequence
          Length = 157200

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 362    tctatgattattggaatggttccttt 387
              ||||| ||||||||||||||||||||
Sbjct: 146050 tctatcattattggaatggttccttt 146025
to top
>gb|AC121510.10| Mus musculus chromosome 19, clone RP24-371N19, complete sequence
          Length = 168677

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 489  caggacagtctttgatatcta 509
            |||||||||||||||||||||
Sbjct: 4310 caggacagtctttgatatcta 4290
to top
>gb|AC147478.2| Pan troglodytes BAC clone CH251-571L4 from Y, complete sequence
          Length = 188138

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 359   tagtctatgattattggaatggttccttt 387
             |||||||| ||||||| ||||||||||||
Sbjct: 68130 tagtctatcattattgtaatggttccttt 68158
to top
>gb|AC147131.2| Pan troglodytes BAC clone CH251-403A11 from Y, complete sequence
          Length = 168159

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 359    tagtctatgattattggaatggttccttt 387
              |||||||| ||||||| ||||||||||||
Sbjct: 100417 tagtctatcattattgtaatggttccttt 100445
to top
>gb|AC117805.8| Mus musculus chromosome 19, clone RP24-565L9, complete sequence
          Length = 156701

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 489   caggacagtctttgatatcta 509
             |||||||||||||||||||||
Sbjct: 46156 caggacagtctttgatatcta 46176
to top
>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome
          Length = 1499920

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 495     agtctttgatatctagttctt 515
               |||||||||||||||||||||
Sbjct: 1448537 agtctttgatatctagttctt 1448517
to top
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 359     tagtctatgattattggaatggttccttt 387
               |||||||| ||||||| ||||||||||||
Sbjct: 5701399 tagtctatcattattgtaatggttccttt 5701427
to top
>gb|AY652746.1| Ehrlichia ruminantium strain Gardel Map1 cluster, complete sequence
          Length = 21115

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 495   agtctttgatatctagttctt 515
             |||||||||||||||||||||
Sbjct: 10048 agtctttgatatctagttctt 10028
to top
>gb|AC023274.2|AC023274 Homo sapiens clone RP11-307L15, complete sequence
          Length = 137682

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 359   tagtctatgattattggaatggttccttt 387
             |||||||| ||||||| ||||||||||||
Sbjct: 91258 tagtctatcattattgcaatggttccttt 91286
to top
>gb|AC007562.4|AC007562 Homo sapiens BAC clone RP11-497C14 from Y, complete sequence
          Length = 137077

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 359  tagtctatgattattggaatggttccttt 387
            |||||||| ||||||| ||||||||||||
Sbjct: 9225 tagtctatcattattgcaatggttccttt 9197
to top
>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 359     tagtctatgattattggaatggttccttt 387
               |||||||| ||||||| ||||||||||||
Sbjct: 3709145 tagtctatcattattgcaatggttccttt 3709117



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 359     tagtctatgattattggaatggttccttt 387
               |||||||| ||||||| ||||||||||||
Sbjct: 2339227 tagtctatcattattgcaatggttccttt 2339255
to top
>gb|AC162902.4| Mus musculus BAC clone RP23-448D23 from chromosome 12, complete sequence
          Length = 190357

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 276    tcttggatagagagagaactggat 299
              ||||||||||||||||| ||||||
Sbjct: 187826 tcttggatagagagagatctggat 187849
to top
>gb|AC164641.5| Mus musculus BAC clone RP23-393F10 from chromosome 12, complete
             sequence
          Length = 198725

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 276   tcttggatagagagagaactggat 299
             ||||||||||||||||| ||||||
Sbjct: 93261 tcttggatagagagagatctggat 93238
to top
>gb|AC107770.10| Mus musculus chromosome 5, clone RP23-114M24, complete sequence
          Length = 191762

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     tgagagatctccaaggtcca 101
              ||||||||||||||||||||
Sbjct: 172634 tgagagatctccaaggtcca 172653
to top
>emb|BX901925.10| Zebrafish DNA sequence from clone DKEYP-86C11 in linkage group 17,
             complete sequence
          Length = 187245

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 289   gagaactggatcaacaaggctagg 312
             ||||||||||| ||||||||||||
Sbjct: 15832 gagaactggataaacaaggctagg 15855
to top
>emb|Z97632.3|HS196E23 Human DNA sequence from clone RP1-196E23 on chromosome Xq26.1-27.2
            Contains the VGLL1 gene for vestgial like 1 (Drosophila),
            the HTATSF1 gene for HIV TAT specific factor 1, the BRS3
            gene for bombesin-like receptor 3 and a CpG island,
            complete sequence
          Length = 123004

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 150  cacccaaggccatggcatcc 169
            ||||||||||||||||||||
Sbjct: 9651 cacccaaggccatggcatcc 9632
to top
>gb|AC125576.4| Rattus norvegicus 18 BAC CH230-9F9 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 237754

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     tgagagatctccaaggtcca 101
              ||||||||||||||||||||
Sbjct: 232613 tgagagatctccaaggtcca 232594
to top
>emb|BX571819.6| Zebrafish DNA sequence from clone CH211-105H3 in linkage group 24,
             complete sequence
          Length = 118635

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 289   gagaactggatcaacaaggctagg 312
             ||||||||||| ||||||||||||
Sbjct: 81186 gagaactggataaacaaggctagg 81209
to top
>gb|AC099772.3| Mus Musculus Chromosome 5 RP23-319P12 Strain C57Bl6/J, complete
            sequence
          Length = 190514

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 82   tgagagatctccaaggtcca 101
            ||||||||||||||||||||
Sbjct: 7660 tgagagatctccaaggtcca 7679
to top
>emb|BX248323.8| Zebrafish DNA sequence from clone CH211-199J6, complete sequence
          Length = 177714

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 289    gagaactggatcaacaaggctagg 312
              ||||||||||| ||||||||||||
Sbjct: 123644 gagaactggataaacaaggctagg 123621
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 391      cttgcagcactgccttttaagctcctcg 418
                ||||| |||||||||||| |||||||||
Sbjct: 17799425 cttgcggcactgcctttttagctcctcg 17799452



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 391      cttgcagcactgccttttaagctcctcg 418
                ||||| |||||||||||| |||||||||
Sbjct: 17776904 cttgcggcactgcctttttagctcctcg 17776931



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 391      cttgcagcactgccttttaagctcctcg 418
                ||||| |||||||||||| |||||||||
Sbjct: 17748018 cttgcggcactgcctttttagctcctcg 17748045
to top
>gb|AC078815.22| Homo sapiens 12q BAC RP11-766N7 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 163475

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   atgcaaaaaacttcaaggat 202
             ||||||||||||||||||||
Sbjct: 95311 atgcaaaaaacttcaaggat 95292
to top
>gb|AC074286.5| Homo sapiens BAC clone RP11-83I14 from 2, complete sequence
          Length = 125066

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 554   atggctggaaacttccaaat 573
             ||||||||||||||||||||
Sbjct: 75459 atggctggaaacttccaaat 75478
to top
>emb|BX004975.9| Zebrafish DNA sequence from clone DKEY-14B16, complete sequence
          Length = 208909

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 289   gagaactggatcaacaaggctagg 312
             ||||||||||| ||||||||||||
Sbjct: 35658 gagaactggataaacaaggctagg 35635
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 391      cttgcagcactgccttttaagctcctcg 418
                ||||| |||||||||||| |||||||||
Sbjct: 17725744 cttgcggcactgcctttttagctcctcg 17725771



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 391      cttgcagcactgccttttaagctcctcg 418
                ||||| |||||||||||| |||||||||
Sbjct: 17702389 cttgcggcactgcctttttagctcctcg 17702416
to top
>emb|AL713909.5|CNS07YQ9 Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0073H17
             of library OSJNBa from chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 113494

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 391   cttgcagcactgccttttaagctcctcg 418
             ||||| |||||||||||| |||||||||
Sbjct: 33335 cttgcggcactgcctttttagctcctcg 33308



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 391  cttgcagcactgccttttaagctcctcg 418
            ||||| |||||||||||| |||||||||
Sbjct: 4449 cttgcggcactgcctttttagctcctcg 4422
to top
>emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb0014C10 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 142246

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 391   cttgcagcactgccttttaagctcctcg 418
             ||||| |||||||||||| |||||||||
Sbjct: 18623 cttgcggcactgcctttttagctcctcg 18650
to top
>gb|AC000115.1|HSAC000115 Human BAC clone GS188P18, complete sequence
          Length = 95855

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   cacccaaggccatggcatcc 169
             ||||||||||||||||||||
Sbjct: 43483 cacccaaggccatggcatcc 43502
to top
>emb|AL683876.5| Mouse DNA sequence from clone RP23-100E6 on chromosome 2, complete
              sequence
          Length = 207486

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     tgagagatctccaaggtcca 101
              ||||||||||||||||||||
Sbjct: 118025 tgagagatctccaaggtcca 118044
to top
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 179     gtgtatgcaaaaaacttcaa 198
               ||||||||||||||||||||
Sbjct: 2475248 gtgtatgcaaaaaacttcaa 2475229
to top
>emb|AL772406.4| Mouse DNA sequence from clone RP23-321K16 on chromosome 4, complete
              sequence
          Length = 151744

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     tagaagatgagagatctcca 94
              ||||||||||||||||||||
Sbjct: 120321 tagaagatgagagatctcca 120340
to top
>emb|AL691440.8| Mouse DNA sequence from clone RP23-231F8 on chromosome 4, complete
             sequence
          Length = 161389

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    tgagagatctccaaggtcca 101
             ||||||||||||||||||||
Sbjct: 78792 tgagagatctccaaggtcca 78811


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,811,991
Number of Sequences: 3902068
Number of extensions: 4811991
Number of successful extensions: 90546
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90162
Number of HSP's gapped (non-prelim): 374
length of query: 603
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 580
effective length of database: 17,143,297,704
effective search space: 9943112668320
effective search space used: 9943112668320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top