Clone Name | rbah61h08 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ507097.1|HVU507097 Hordeum vulgare mRNA for NBS-LRR disease resistance protein homologue (rga S-9217 gene) Length = 5145 Score = 1035 bits (522), Expect = 0.0 Identities = 531/534 (99%) Strand = Plus / Minus Query: 70 gcgactagaagatgagagatctccaaggtccataagaatgtgcaagtccaagacagatcc 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5021 gcgactagaagatgagagatctccaaggtccataagaatgtgcaagtccaagacagatcc 4962 Query: 130 catatttatgtaggagataccacccaaggccatggcatccgaactgctcgtgtatgcaaa 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4961 catatttatgtaggagataccacccaaggccatggcatccgaactgctcgtgtatgcaaa 4902 Query: 190 aaacttcaaggataacagcacttcaacaacttcatgccagaggccagtttagtaatggat 249 |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 4901 aaacttcaaggataacagcacttctataacttcatgccagaggccagtttagtaatggat 4842 Query: 250 ggattctatagtctgggaccttgtgttcttggatagagagagaactggatcaacaaggct 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4841 ggattctatagtctgggaccttgtgttcttggatagagagagaactggatcaacaaggct 4782 Query: 310 aggctagaagaatgtacaaatccaagaagacctcttggattagccttagtagtctatgat 369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4781 aggctagaagaatgtacaaatccaagaagacctcttggattagccttagtagtctatgat 4722 Query: 370 tattggaatggttccttttaacttgcagcactgccttttaagctcctcgctgatgccacc 429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4721 tattggaatggttccttttaacttgcagcactgccttttaagctcctcgctgatgccacc 4662 Query: 430 acaaacttctaatttccgtagtgaacttggcaggccgtccttgggcagagatttgatggc 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4661 acaaacttctaatttccgtagtgaacttggcaggccgtccttgggcagagatttgatggc 4602 Query: 490 aggacagtctttgatatctagttcttgcagagaacttggcagtccgtccttgggcagcga 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 4601 aggacagtctttgatatctagttcttgcagagaacttggcagtccgtccttgggcagcaa 4542 Query: 550 cctgatggctggaaacttccaaatccgtaatatcttgaggctggcaagctgggc 603 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4541 cctgatggctggaaacttccaaatccgtaatatcttgaggctggcaagctgggc 4488
>emb|AJ507091.1|HVU507091 Hordeum vulgare partial mRNA for NBS-LRR disease resistance protein homologue (rga S-226 gene) Length = 5451 Score = 704 bits (355), Expect = 0.0 Identities = 405/419 (96%), Gaps = 2/419 (0%) Strand = Plus / Minus Query: 129 ccatatttatgtaggagataccacccaaggccatggcatccgaactgctcgtgt-atgca 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 5255 ccatatttatgtaggagataccacccaaggccatggcatccgaactgctcgtgttatgca 5196 Query: 188 aaaaacttcaaggataacagcacttcaacaacttcatgccagaggccagtttagtaatgg 247 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 5195 aaaaacttcaaggataacagcacttctacaacttcatgccagaggccggtttagtaatgg 5136 Query: 248 atggattctatagtctgggaccttgtgttcttggatagagagagaactggatcaacaagg 307 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 5135 atggattctatagtctgggaccttctgttcttggatagagagagaactggatcaacaagg 5076 Query: 308 ctaggctagaagaatgtacaaatccaagaagacctcttggattagccttagtagtctatg 367 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5075 ctaggctagaa-aatgtacaaatccaagaagacctcttggattagccttagtagtctatg 5017 Query: 368 attattggaatggttccttttaacttgcagcactgccttttaagctcctcgctgatgcca 427 |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct: 5016 attattggaatggttccttttaacttgcggcactgccttttaagttcctcgctgatgcca 4957 Query: 428 ccacaaacttctaatttccgtagtgaacttggcaggccgtccttgggcagagatttgatg 487 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4956 tcacaaacttctaatttccgtagtgaacttggcaggccgtccttgggcagagatttgatg 4897 Query: 488 gcaggacagtctttgatatctagttcttgcagagaacttggcagtccgtccttgggcag 546 ||||| |||| | |||| ||||||||||| |||||||||||||| |||||||||||||| Sbjct: 4896 gcagggcagtttctgatctctagttcttgtagagaacttggcaggccgtccttgggcag 4838 Score = 264 bits (133), Expect = 3e-67 Identities = 151/157 (96%) Strand = Plus / Minus Query: 447 gtagtgaacttggcaggccgtccttgggcagagatttgatggcaggacagtctttgatat 506 |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 4868 gtagagaacttggcaggccgtccttgggcagagatttgatggcaggacagactttgatat 4809 Query: 507 ctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctggaaact 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 4808 ctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctggacacc 4749 Query: 567 tccaaatccgtaatatcttgaggctggcaagctgggc 603 ||||||||||||||||||||||||||||||| |||| Sbjct: 4748 accaaatccgtaatatcttgaggctggcaagccgggc 4712 Score = 103 bits (52), Expect = 7e-19 Identities = 59/60 (98%), Gaps = 1/60 (1%) Strand = Plus / Minus Query: 70 gcgactagaagatgagagatctccaaggtccataagaatgtgcaagtccaagacagatcc 129 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 5446 gcgactagaagatgagagatctccaag-tccataagaatgtgcaagtccaagacagatcc 5388
>emb|AJ507088.1|HVU507088 Hordeum vulgare partial mRNA for NBS-LRR disease resistance protein homologue (rga S-112 gene) Length = 4654 Score = 412 bits (208), Expect = e-112 Identities = 247/260 (95%) Strand = Plus / Minus Query: 343 cttggattagccttagtagtctatgattattggaatggttccttttaacttgcagcactg 402 |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct: 4453 cttggattagccttagtagtctttgattattggaatggttccttttaacttgcggcactg 4394 Query: 403 ccttttaagctcctcgctgatgccaccacaaacttctaatttccgtagtgaacttggcag 462 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct: 4393 ccttttaagctcctcgctgatggcaccacaaacttctaatttccgtagtgaacttgacag 4334 Query: 463 gccgtccttgggcagagatttgatggcaggacagtctttgatatctagttcttgcagaga 522 ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 4333 gccgtccctgggcagagatttgatggcaggacagtctttgatctctagttcttgcagaga 4274 Query: 523 acttggcagtccgtccttgggcagcgacctgatggctggaaacttccaaatccgtaatat 582 ||||||||||||||||||||||||||| |||||| ||| | | ||||||||||||||| Sbjct: 4273 acttggcagtccgtccttgggcagcgagctgatgtctgtacaacaccaaatccgtaatat 4214 Query: 583 cttgaggctggcaagctggg 602 |||||||||||||||||||| Sbjct: 4213 cttgaggctggcaagctggg 4194 Score = 303 bits (153), Expect = 4e-79 Identities = 163/165 (98%), Gaps = 1/165 (0%) Strand = Plus / Minus Query: 70 gcgactagaagatgagagatctccaaggtccataagaatgtgcaagtccaagacagatcc 129 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 4627 gcgactagaagatgagagatctccaag-tccataagaatgtgcaagtccaagacagatcc 4569 Query: 130 catatttatgtaggagataccacccaaggccatggcatccgaactgctcgtgtatgcaaa 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4568 catatttatgtaggagataccacccaaggccatggcatccgaactgctcgtgtatgcaaa 4509 Query: 190 aaacttcaaggataacagcacttcaacaacttcatgccagaggcc 234 |||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 4508 aaacttcaaggataacagcacttctacaacttcatgccagaggcc 4464
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 361 gtctatgattattggaatggttccttttaacttgcagcactgccttttaagctcctcgct 420 |||| |||| ||||||||||||||| ||| ||||| |||||||||||| ||||||||||| Sbjct: 29425262 gtctttgatgattggaatggttcctcttagcttgcggcactgccttttgagctcctcgct 29425321 Query: 421 g 421 | Sbjct: 29425322 g 29425322 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 371 attggaatggttccttttaacttgcagcactgccttttaagctcctcgct 420 |||| ||| |||||||||| ||||| |||||||||||| ||||| ||||| Sbjct: 22971590 attgcaattgttccttttagcttgcggcactgccttttgagctcttcgct 22971639 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Plus Query: 374 ggaatggttccttttaacttgcagcactgccttttaagctcctcg 418 ||||| |||||| ||| ||||| |||||||||||| ||||||||| Sbjct: 29403345 ggaattgttcctcttagcttgcggcactgccttttgagctcctcg 29403389 Score = 44.1 bits (22), Expect = 0.53 Identities = 49/58 (84%) Strand = Plus / Plus Query: 505 atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562 ||||||| ||| ||| ||||| || || ||| ||||||||||||| | |||||||||| Sbjct: 29381469 atctagtacttccagtgaactcggaaggccgcccttgggcagcgaacggatggctgga 29381526 Score = 42.1 bits (21), Expect = 2.1 Identities = 39/45 (86%) Strand = Plus / Plus Query: 374 ggaatggttccttttaacttgcagcactgccttttaagctcctcg 418 |||||||||||| ||| ||| | |||||| ||||| ||||||||| Sbjct: 29411398 ggaatggttcctcttagcttacggcactgtcttttgagctcctcg 29411442
>dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0621D05 Length = 180250 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 361 gtctatgattattggaatggttccttttaacttgcagcactgccttttaagctcctcgct 420 |||| |||| ||||||||||||||| ||| ||||| |||||||||||| ||||||||||| Sbjct: 136143 gtctttgatgattggaatggttcctcttagcttgcggcactgccttttgagctcctcgct 136202 Query: 421 g 421 | Sbjct: 136203 g 136203 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Plus Query: 374 ggaatggttccttttaacttgcagcactgccttttaagctcctcg 418 ||||| |||||| ||| ||||| |||||||||||| ||||||||| Sbjct: 114226 ggaattgttcctcttagcttgcggcactgccttttgagctcctcg 114270 Score = 44.1 bits (22), Expect = 0.53 Identities = 49/58 (84%) Strand = Plus / Plus Query: 505 atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562 ||||||| ||| ||| ||||| || || ||| ||||||||||||| | |||||||||| Sbjct: 92350 atctagtacttccagtgaactcggaaggccgcccttgggcagcgaacggatggctgga 92407 Score = 42.1 bits (21), Expect = 2.1 Identities = 39/45 (86%) Strand = Plus / Plus Query: 374 ggaatggttccttttaacttgcagcactgccttttaagctcctcg 418 |||||||||||| ||| ||| | |||||| ||||| ||||||||| Sbjct: 122279 ggaatggttcctcttagcttacggcactgtcttttgagctcctcg 122323
>dbj|AK100253.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061C20, full insert sequence Length = 2552 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 361 gtctatgattattggaatggttccttttaacttgcagcactgccttttaagctcctcgct 420 |||| |||| ||||||||||||||| ||| ||||| |||||||||||| ||||||||||| Sbjct: 1356 gtctttgatgattggaatggttcctcttagcttgcggcactgccttttgagctcctcgct 1297 Query: 421 g 421 | Sbjct: 1296 g 1296
>dbj|AK099567.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034N02, full insert sequence Length = 4016 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 361 gtctatgattattggaatggttccttttaacttgcagcactgccttttaagctcctcgct 420 |||| |||| ||||||||||||||| ||| ||||| |||||||||||| ||||||||||| Sbjct: 3180 gtctttgatgattggaatggttcctcttagcttgcggcactgccttttgagctcctcgct 3121 Query: 421 g 421 | Sbjct: 3120 g 3120
>dbj|AK069923.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035K08, full insert sequence Length = 4256 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 505 atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562 ||||||||||||||| ||||| || || || ||||||||||||||||||||| |||| Sbjct: 737 atctagttcttgcagtgaactggggaggccacccttgggcagcgacctgatggatgga 680 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 505 atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562 ||||||||||||||| ||||| || || || ||||||||||||||| ||||| |||| Sbjct: 1976 atctagttcttgcagtgaactggggaggccacccttgggcagcgaccggatggatgga 1919
>gb|AF402959.1| Oryza sativa chromosome 4 clones V17 and 214, genomic sequence Length = 64224 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 505 atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562 ||||||||||||||| ||||| || || || ||||||||||||||| ||||| |||| Sbjct: 53929 atctagttcttgcagtgaactggggaggccacccttgggcagcgaccggatggatgga 53872
>ref|XM_473970.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 6342 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 505 atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562 ||||||||||||||| ||||| || || || ||||||||||||||| ||||| |||| Sbjct: 5343 atctagttcttgcagtgaactggggaggccacccttgggcagcgaccggatggatgga 5286 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 505 atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562 ||||||||||||||| ||||| || || || ||||||||||||||| ||||| |||| Sbjct: 4575 atctagttcttgcagtgaactggggaggccacccttgggcagcgaccggatggatgga 4518
>emb|AL606669.4|OSJN00106 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060E08, complete sequence Length = 166951 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 505 atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562 ||||||||||||||| ||||| || || || ||||||||||||||| ||||| |||| Sbjct: 68992 atctagttcttgcagtgaactggggaggccacccttgggcagcgaccggatggatgga 68935 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 505 atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562 ||||||||||||||| ||||| || || || ||||||||||||||| ||||| |||| Sbjct: 66129 atctagttcttgcagtgaactggggaggccacccttgggcagcgaccggatggatgga 66072
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 505 atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562 ||||||||||||||| ||||| || || || ||||||||||||||| ||||| |||| Sbjct: 31896126 atctagttcttgcagtgaactggggaggccacccttgggcagcgaccggatggatgga 31896069 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 505 atctagttcttgcagagaacttggcagtccgtccttgggcagcgacctgatggctgga 562 ||||||||||||||| ||||| || || || ||||||||||||||| ||||| |||| Sbjct: 31893263 atctagttcttgcagtgaactggggaggccacccttgggcagcgaccggatggatgga 31893206
>dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0502H06 Length = 165630 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 371 attggaatggttccttttaacttgcagcactgccttttaagctcctcgct 420 |||| ||| |||||||||| ||||| |||||||||||| ||||| ||||| Sbjct: 146412 attgcaattgttccttttagcttgcggcactgccttttgagctcttcgct 146461
>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652A05 Length = 150455 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 371 attggaatggttccttttaacttgcagcactgccttttaagctcctcgct 420 |||| ||| |||||||||| ||||| |||||||||||| ||||| ||||| Sbjct: 38075 attgcaattgttccttttagcttgcggcactgccttttgagctcttcgct 38124
>gb|AC027104.6| Homo sapiens chromosome 15, clone RP11-326L17, complete sequence Length = 180202 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 359 tagtctatgattattggaatggttccttt 387 |||||||| |||||||||||||||||||| Sbjct: 74634 tagtctatcattattggaatggttccttt 74606
>gb|AC135995.7| Homo sapiens chromosome 15, clone RP13-608F4, complete sequence Length = 157246 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 362 tctatgattattggaatggttccttt 387 ||||| |||||||||||||||||||| Sbjct: 125068 tctatcattattggaatggttccttt 125043
>gb|AC135735.2| Homo sapiens chromosome 15, clone RP11-1270F20, complete sequence Length = 175310 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 362 tctatgattattggaatggttccttt 387 ||||| |||||||||||||||||||| Sbjct: 8289 tctatcattattggaatggttccttt 8314
>gb|AC127482.10| Homo sapiens chromosome 15, clone CTD-2547M4, complete sequence Length = 193680 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 362 tctatgattattggaatggttccttt 387 ||||| |||||||||||||||||||| Sbjct: 9463 tctatcattattggaatggttccttt 9488
>gb|AC011295.3| Homo sapiens BAC clone RP11-96J23 from 15, complete sequence Length = 148698 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 362 tctatgattattggaatggttccttt 387 ||||| |||||||||||||||||||| Sbjct: 9017 tctatcattattggaatggttccttt 8992
>gb|AC010724.6|AC010724 Homo sapiens BAC clone RP11-152F13 from 15, complete sequence Length = 157200 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 362 tctatgattattggaatggttccttt 387 ||||| |||||||||||||||||||| Sbjct: 146050 tctatcattattggaatggttccttt 146025
>gb|AC121510.10| Mus musculus chromosome 19, clone RP24-371N19, complete sequence Length = 168677 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 489 caggacagtctttgatatcta 509 ||||||||||||||||||||| Sbjct: 4310 caggacagtctttgatatcta 4290
>gb|AC147478.2| Pan troglodytes BAC clone CH251-571L4 from Y, complete sequence Length = 188138 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 359 tagtctatgattattggaatggttccttt 387 |||||||| ||||||| |||||||||||| Sbjct: 68130 tagtctatcattattgtaatggttccttt 68158
>gb|AC147131.2| Pan troglodytes BAC clone CH251-403A11 from Y, complete sequence Length = 168159 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 359 tagtctatgattattggaatggttccttt 387 |||||||| ||||||| |||||||||||| Sbjct: 100417 tagtctatcattattgtaatggttccttt 100445
>gb|AC117805.8| Mus musculus chromosome 19, clone RP24-565L9, complete sequence Length = 156701 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 489 caggacagtctttgatatcta 509 ||||||||||||||||||||| Sbjct: 46156 caggacagtctttgatatcta 46176
>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome Length = 1499920 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 495 agtctttgatatctagttctt 515 ||||||||||||||||||||| Sbjct: 1448537 agtctttgatatctagttctt 1448517
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 359 tagtctatgattattggaatggttccttt 387 |||||||| ||||||| |||||||||||| Sbjct: 5701399 tagtctatcattattgtaatggttccttt 5701427
>gb|AY652746.1| Ehrlichia ruminantium strain Gardel Map1 cluster, complete sequence Length = 21115 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 495 agtctttgatatctagttctt 515 ||||||||||||||||||||| Sbjct: 10048 agtctttgatatctagttctt 10028
>gb|AC023274.2|AC023274 Homo sapiens clone RP11-307L15, complete sequence Length = 137682 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 359 tagtctatgattattggaatggttccttt 387 |||||||| ||||||| |||||||||||| Sbjct: 91258 tagtctatcattattgcaatggttccttt 91286
>gb|AC007562.4|AC007562 Homo sapiens BAC clone RP11-497C14 from Y, complete sequence Length = 137077 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 359 tagtctatgattattggaatggttccttt 387 |||||||| ||||||| |||||||||||| Sbjct: 9225 tagtctatcattattgcaatggttccttt 9197
>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2 (P1-P2-P3-IR2@) on chromosome Y Length = 4538292 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 359 tagtctatgattattggaatggttccttt 387 |||||||| ||||||| |||||||||||| Sbjct: 3709145 tagtctatcattattgcaatggttccttt 3709117 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 359 tagtctatgattattggaatggttccttt 387 |||||||| ||||||| |||||||||||| Sbjct: 2339227 tagtctatcattattgcaatggttccttt 2339255
>gb|AC162902.4| Mus musculus BAC clone RP23-448D23 from chromosome 12, complete sequence Length = 190357 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 276 tcttggatagagagagaactggat 299 ||||||||||||||||| |||||| Sbjct: 187826 tcttggatagagagagatctggat 187849
>gb|AC164641.5| Mus musculus BAC clone RP23-393F10 from chromosome 12, complete sequence Length = 198725 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 276 tcttggatagagagagaactggat 299 ||||||||||||||||| |||||| Sbjct: 93261 tcttggatagagagagatctggat 93238
>gb|AC107770.10| Mus musculus chromosome 5, clone RP23-114M24, complete sequence Length = 191762 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 tgagagatctccaaggtcca 101 |||||||||||||||||||| Sbjct: 172634 tgagagatctccaaggtcca 172653
>emb|BX901925.10| Zebrafish DNA sequence from clone DKEYP-86C11 in linkage group 17, complete sequence Length = 187245 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 289 gagaactggatcaacaaggctagg 312 ||||||||||| |||||||||||| Sbjct: 15832 gagaactggataaacaaggctagg 15855
>emb|Z97632.3|HS196E23 Human DNA sequence from clone RP1-196E23 on chromosome Xq26.1-27.2 Contains the VGLL1 gene for vestgial like 1 (Drosophila), the HTATSF1 gene for HIV TAT specific factor 1, the BRS3 gene for bombesin-like receptor 3 and a CpG island, complete sequence Length = 123004 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 cacccaaggccatggcatcc 169 |||||||||||||||||||| Sbjct: 9651 cacccaaggccatggcatcc 9632
>gb|AC125576.4| Rattus norvegicus 18 BAC CH230-9F9 (Children's Hospital Oakland Research Institute) complete sequence Length = 237754 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 tgagagatctccaaggtcca 101 |||||||||||||||||||| Sbjct: 232613 tgagagatctccaaggtcca 232594
>emb|BX571819.6| Zebrafish DNA sequence from clone CH211-105H3 in linkage group 24, complete sequence Length = 118635 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 289 gagaactggatcaacaaggctagg 312 ||||||||||| |||||||||||| Sbjct: 81186 gagaactggataaacaaggctagg 81209
>gb|AC099772.3| Mus Musculus Chromosome 5 RP23-319P12 Strain C57Bl6/J, complete sequence Length = 190514 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 tgagagatctccaaggtcca 101 |||||||||||||||||||| Sbjct: 7660 tgagagatctccaaggtcca 7679
>emb|BX248323.8| Zebrafish DNA sequence from clone CH211-199J6, complete sequence Length = 177714 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 289 gagaactggatcaacaaggctagg 312 ||||||||||| |||||||||||| Sbjct: 123644 gagaactggataaacaaggctagg 123621
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 391 cttgcagcactgccttttaagctcctcg 418 ||||| |||||||||||| ||||||||| Sbjct: 17799425 cttgcggcactgcctttttagctcctcg 17799452 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 391 cttgcagcactgccttttaagctcctcg 418 ||||| |||||||||||| ||||||||| Sbjct: 17776904 cttgcggcactgcctttttagctcctcg 17776931 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 391 cttgcagcactgccttttaagctcctcg 418 ||||| |||||||||||| ||||||||| Sbjct: 17748018 cttgcggcactgcctttttagctcctcg 17748045
>gb|AC078815.22| Homo sapiens 12q BAC RP11-766N7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163475 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 atgcaaaaaacttcaaggat 202 |||||||||||||||||||| Sbjct: 95311 atgcaaaaaacttcaaggat 95292
>gb|AC074286.5| Homo sapiens BAC clone RP11-83I14 from 2, complete sequence Length = 125066 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 554 atggctggaaacttccaaat 573 |||||||||||||||||||| Sbjct: 75459 atggctggaaacttccaaat 75478
>emb|BX004975.9| Zebrafish DNA sequence from clone DKEY-14B16, complete sequence Length = 208909 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 289 gagaactggatcaacaaggctagg 312 ||||||||||| |||||||||||| Sbjct: 35658 gagaactggataaacaaggctagg 35635
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 391 cttgcagcactgccttttaagctcctcg 418 ||||| |||||||||||| ||||||||| Sbjct: 17725744 cttgcggcactgcctttttagctcctcg 17725771 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 391 cttgcagcactgccttttaagctcctcg 418 ||||| |||||||||||| ||||||||| Sbjct: 17702389 cttgcggcactgcctttttagctcctcg 17702416
>emb|AL713909.5|CNS07YQ9 Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0073H17 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 113494 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 391 cttgcagcactgccttttaagctcctcg 418 ||||| |||||||||||| ||||||||| Sbjct: 33335 cttgcggcactgcctttttagctcctcg 33308 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 391 cttgcagcactgccttttaagctcctcg 418 ||||| |||||||||||| ||||||||| Sbjct: 4449 cttgcggcactgcctttttagctcctcg 4422
>emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb0014C10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 142246 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 391 cttgcagcactgccttttaagctcctcg 418 ||||| |||||||||||| ||||||||| Sbjct: 18623 cttgcggcactgcctttttagctcctcg 18650
>gb|AC000115.1|HSAC000115 Human BAC clone GS188P18, complete sequence Length = 95855 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 cacccaaggccatggcatcc 169 |||||||||||||||||||| Sbjct: 43483 cacccaaggccatggcatcc 43502
>emb|AL683876.5| Mouse DNA sequence from clone RP23-100E6 on chromosome 2, complete sequence Length = 207486 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 tgagagatctccaaggtcca 101 |||||||||||||||||||| Sbjct: 118025 tgagagatctccaaggtcca 118044
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 gtgtatgcaaaaaacttcaa 198 |||||||||||||||||||| Sbjct: 2475248 gtgtatgcaaaaaacttcaa 2475229
>emb|AL772406.4| Mouse DNA sequence from clone RP23-321K16 on chromosome 4, complete sequence Length = 151744 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tagaagatgagagatctcca 94 |||||||||||||||||||| Sbjct: 120321 tagaagatgagagatctcca 120340
>emb|AL691440.8| Mouse DNA sequence from clone RP23-231F8 on chromosome 4, complete sequence Length = 161389 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 tgagagatctccaaggtcca 101 |||||||||||||||||||| Sbjct: 78792 tgagagatctccaaggtcca 78811 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,811,991 Number of Sequences: 3902068 Number of extensions: 4811991 Number of successful extensions: 90546 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90162 Number of HSP's gapped (non-prelim): 374 length of query: 603 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 580 effective length of database: 17,143,297,704 effective search space: 9943112668320 effective search space used: 9943112668320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)