Clone Name | rbah61h06 |
---|---|
Clone Library Name | barley_pub |
>FA48A_RAT (Q66HC7) Protein FAM48A| Length = 530 Score = 36.6 bits (83), Expect = 0.041 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Frame = -3 Query: 447 LGTGPSHLSPGLKLPMYPSMASTGSSGGPLVSSYPSCFLALPMPPP---KPTKGERLKQT 277 LG G H P +KLP S + SSG + S FL P PPP KP+ + Sbjct: 451 LGKGVKHRPPPIKLP---SSSGNSSSGNYFTAQQASSFLKSPTPPPPSSKPSLSRKSSVD 507 Query: 276 LAKVN 262 L++V+ Sbjct: 508 LSQVS 512
>CCD95_BOVIN (Q29RS4) Coiled-coil domain-containing protein 95| Length = 244 Score = 36.2 bits (82), Expect = 0.054 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 5/69 (7%) Frame = -3 Query: 471 QQQTPLLGLGTGPSHLS--PGLKLPMYPSMAST---GSSGGPLVSSYPSCFLALPMPPPK 307 ++++P LG PS LS P P+ S A + S P +PS +LAL +P P Sbjct: 95 RKRSPPLGGAPSPSSLSLPPSTGFPLQASRAPSPYLSSLASPTYPPFPSDYLALQLPEPS 154 Query: 306 PTKGERLKQ 280 P + +R K+ Sbjct: 155 PLRPKREKR 163
>FA48A_MOUSE (Q7TT00) Protein FAM48A (p38-interacting protein) (p38IP)| Length = 530 Score = 36.2 bits (82), Expect = 0.054 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Frame = -3 Query: 447 LGTGPSHLSPGLKLPMYPSMASTGSSGGPLVSSYPSCFLALPMPPP--KPTKGERLKQTL 274 LG G H P +KLP S + SSG + S FL P PPP KP+ + L Sbjct: 452 LGKGVKHRPPPIKLP---SGSGNSSSGNYFTAQQASSFLKSPTPPPSCKPSLSRKSSVDL 508 Query: 273 AKVN 262 ++V+ Sbjct: 509 SQVS 512
>ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1183 Score = 34.3 bits (77), Expect = 0.20 Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 3/70 (4%) Frame = -3 Query: 459 PLLGLGTGPSHLSPGLKLPMYPSMASTGS---SGGPLVSSYPSCFLALPMPPPKPTKGER 289 P GT P + G P P GS GPL + PS +LP PP PT G Sbjct: 656 PSFRTGTPPGYR--GTSPPAGPGTFKPGSPTVGPGPLPPAGPSSLSSLPPPPAAPTTGPP 713 Query: 288 LKQTLAKVNP 259 L T K P Sbjct: 714 LTATQIKQEP 723
>FA48A_HUMAN (Q8NEM7) Protein FAM48A (p38-interacting protein) (p38IP)| Length = 779 Score = 33.9 bits (76), Expect = 0.27 Identities = 19/46 (41%), Positives = 21/46 (45%) Frame = -3 Query: 447 LGTGPSHLSPGLKLPMYPSMASTGSSGGPLVSSYPSCFLALPMPPP 310 LG G H P +KLP S + SSG S FL P PPP Sbjct: 455 LGKGVKHRPPPIKLP---SSSGNSSSGNYFTPQQTSSFLKSPTPPP 497
>CCD95_HUMAN (Q8NBZ0) Coiled-coil domain-containing protein 95| Length = 244 Score = 33.1 bits (74), Expect = 0.46 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%) Frame = -3 Query: 471 QQQTPLLGLGTGPSHLS--PGLKLPMY------PSMASTGSSGGPLVSSYPSCFLALPMP 316 ++++P LG PS LS P P+ P ++S SS P +PS +LAL +P Sbjct: 95 RKRSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSLASSRYP---PFPSDYLALQLP 151 Query: 315 PPKPTKGERLKQ 280 P P + +R K+ Sbjct: 152 EPSPLRPKREKR 163
>FA48A_PONPY (Q5R724) Protein FAM48A| Length = 522 Score = 33.1 bits (74), Expect = 0.46 Identities = 19/46 (41%), Positives = 21/46 (45%) Frame = -3 Query: 447 LGTGPSHLSPGLKLPMYPSMASTGSSGGPLVSSYPSCFLALPMPPP 310 LG G H P +KLP S + SSG S FL P PPP Sbjct: 443 LGKGVKHRPPPIKLP---SSSGNSSSGNYFSPQQTSSFLKSPTPPP 485
>FMN2_MOUSE (Q9JL04) Formin-2| Length = 1567 Score = 33.1 bits (74), Expect = 0.46 Identities = 19/62 (30%), Positives = 28/62 (45%) Frame = -3 Query: 480 MGYQQQTPLLGLGTGPSHLSPGLKLPMYPSMASTGSSGGPLVSSYPSCFLALPMPPPKPT 301 +G PL G+G P PG+ +P P + +G P + +A+P PPP P Sbjct: 1007 VGIPPPPPLPGVGIPPPPPLPGMGIPPPPPLPGSGIPPPPALPG-----VAIPPPPPLPG 1061 Query: 300 KG 295 G Sbjct: 1062 MG 1063 Score = 33.1 bits (74), Expect = 0.46 Identities = 21/70 (30%), Positives = 28/70 (40%) Frame = -3 Query: 504 PASHQYNNMGYQQQTPLLGLGTGPSHLSPGLKLPMYPSMASTGSSGGPLVSSYPSCFLAL 325 P + MG PL G+G P PG+ +P P + G P P + + Sbjct: 911 PPAPPLPGMGIPPPPPLPGMGIPPPPPLPGMGIPPPPPLPGVGIPPPP-----PLPGVGI 965 Query: 324 PMPPPKPTKG 295 P PPP P G Sbjct: 966 PPPPPLPGVG 975 Score = 31.6 bits (70), Expect = 1.3 Identities = 19/62 (30%), Positives = 26/62 (41%) Frame = -3 Query: 480 MGYQQQTPLLGLGTGPSHLSPGLKLPMYPSMASTGSSGGPLVSSYPSCFLALPMPPPKPT 301 +G PL G+G P PG+ +P P + G P P + +P PPP P Sbjct: 985 VGIPPPPPLPGVGIPPPPPLPGVGIPPPPPLPGVGIPPPP-----PLPGMGIPPPPPLPG 1039 Query: 300 KG 295 G Sbjct: 1040 SG 1041 Score = 30.8 bits (68), Expect = 2.3 Identities = 19/62 (30%), Positives = 26/62 (41%) Frame = -3 Query: 480 MGYQQQTPLLGLGTGPSHLSPGLKLPMYPSMASTGSSGGPLVSSYPSCFLALPMPPPKPT 301 +G PL G+G P PG+ +P P + G P P + +P PPP P Sbjct: 974 VGIPPPPPLPGVGIPPPPPLPGVGIPPPPPLPGVGIPPPP-----PLPGVGIPPPPPLPG 1028 Query: 300 KG 295 G Sbjct: 1029 MG 1030 Score = 30.4 bits (67), Expect = 3.0 Identities = 19/62 (30%), Positives = 26/62 (41%) Frame = -3 Query: 480 MGYQQQTPLLGLGTGPSHLSPGLKLPMYPSMASTGSSGGPLVSSYPSCFLALPMPPPKPT 301 +G PL G+G P PG+ +P P + G P P + +P PPP P Sbjct: 963 VGIPPPPPLPGVGIPPPPPLPGVGIPPPPPLPGVGIPPPP-----PLPGVGIPPPPPLPG 1017 Query: 300 KG 295 G Sbjct: 1018 VG 1019 Score = 30.4 bits (67), Expect = 3.0 Identities = 19/62 (30%), Positives = 26/62 (41%) Frame = -3 Query: 480 MGYQQQTPLLGLGTGPSHLSPGLKLPMYPSMASTGSSGGPLVSSYPSCFLALPMPPPKPT 301 +G PL G+G P PG+ +P P + G P P + +P PPP P Sbjct: 952 VGIPPPPPLPGVGIPPPPPLPGVGIPPPPPLPGVGIPPPP-----PLPGVGIPPPPPLPG 1006 Query: 300 KG 295 G Sbjct: 1007 VG 1008
>DAAM1_HUMAN (Q9Y4D1) Disheveled-associated activator of morphogenesis 1| Length = 1078 Score = 32.7 bits (73), Expect = 0.60 Identities = 15/31 (48%), Positives = 16/31 (51%) Frame = -3 Query: 396 PSMASTGSSGGPLVSSYPSCFLALPMPPPKP 304 P S G+ GGP SS P L P PPP P Sbjct: 528 PGGPSPGAPGGPFPSSVPGSLLPPPPPPPLP 558
>Y2082_MYCTU (Q10690) Hypothetical protein Rv2082| Length = 721 Score = 32.7 bits (73), Expect = 0.60 Identities = 23/56 (41%), Positives = 26/56 (46%) Frame = -3 Query: 462 TPLLGLGTGPSHLSPGLKLPMYPSMASTGSSGGPLVSSYPSCFLALPMPPPKPTKG 295 T G T P+ SP PM S +ST SSG P + S F PMPP P G Sbjct: 219 TTTSGPPTAPTPTSPFGTAPMVLSSSST-SSGPPTAPTPTSPFGTAPMPPGPPPPG 273
>LZTS2_HUMAN (Q9BRK4) Leucine zipper putative tumor suppressor 2 (Protein| LAPSER1) Length = 669 Score = 32.3 bits (72), Expect = 0.78 Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 11/69 (15%) Frame = -3 Query: 459 PLLGLGTGPSHLSPGLKLPMYPSMASTGSSGGPLVSSY-----------PSCFLALPMPP 313 P G+ TGPSH G S STGS GG + SC P PP Sbjct: 260 PARGVPTGPSHSDSGRS----SSSKSTGSLGGRVAGGLLGSGTRASPDSSSCGERSPPPP 315 Query: 312 PKPTKGERL 286 P P E L Sbjct: 316 PPPPSDEAL 324
>FA48A_CHICK (Q5ZM71) Protein FAM48A| Length = 687 Score = 32.3 bits (72), Expect = 0.78 Identities = 19/48 (39%), Positives = 22/48 (45%) Frame = -3 Query: 447 LGTGPSHLSPGLKLPMYPSMASTGSSGGPLVSSYPSCFLALPMPPPKP 304 LG G H P +KLP S + + SSG S L P PPP P Sbjct: 447 LGKGVKHRPPPIKLP---SSSGSSSSGNIFSPQQSSGHLKSPTPPPPP 491
>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1186 Score = 32.0 bits (71), Expect = 1.0 Identities = 24/70 (34%), Positives = 27/70 (38%), Gaps = 3/70 (4%) Frame = -3 Query: 459 PLLGLGTGPSHLSPGLKLPMYPSMASTGS---SGGPLVSSYPSCFLALPMPPPKPTKGER 289 P GT P + G P P GS GPL + PS +LP PP P G Sbjct: 659 PSFRTGTPPGYR--GTSPPAGPGTFKPGSPTVGPGPLPPAGPSGLPSLPPPPAAPASGPP 716 Query: 288 LKQTLAKVNP 259 L T K P Sbjct: 717 LSATQIKQEP 726
>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1185 Score = 32.0 bits (71), Expect = 1.0 Identities = 24/70 (34%), Positives = 27/70 (38%), Gaps = 3/70 (4%) Frame = -3 Query: 459 PLLGLGTGPSHLSPGLKLPMYPSMASTGS---SGGPLVSSYPSCFLALPMPPPKPTKGER 289 P GT P + G P P GS GPL + PS +LP PP P G Sbjct: 658 PSFRTGTPPGYR--GTSPPAGPGTFKPGSPTVGPGPLPPAGPSGLPSLPPPPAAPASGPP 715 Query: 288 LKQTLAKVNP 259 L T K P Sbjct: 716 LSATQIKQEP 725
>CCD95_RAT (Q6AYH2) Coiled-coil domain-containing protein 95| Length = 244 Score = 30.8 bits (68), Expect = 2.3 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%) Frame = -3 Query: 471 QQQTPLLGLGTGPSHLS--PGLKLPMYPSMAST---GSSGGPLVSSYPSCFLALPMPPPK 307 ++++P +G PS LS P P+ S A + S P +PS +LAL +P P Sbjct: 95 RKRSPPMGGAPSPSSLSLPPSSGFPLQTSGAPSPYLSSLASPPYPPFPSDYLALQLPEPS 154 Query: 306 PTK 298 P + Sbjct: 155 PLR 157
>SRBP1_HUMAN (P36956) Sterol regulatory element-binding protein 1 (SREBP-1)| (Sterol regulatory element-binding transcription factor 1) Length = 1147 Score = 30.8 bits (68), Expect = 2.3 Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 4/55 (7%) Frame = -3 Query: 456 LLGLGTGPSHLSPGLKLP----MYPSMASTGSSGGPLVSSYPSCFLALPMPPPKP 304 L G PS LSP P MYPSM + G S P L P P P P Sbjct: 87 LSGPQAAPSPLSPPQPAPTPLKMYPSMPAFSPGPGIKEESVPLSILQTPTPQPLP 141
>PPNK_ARCFU (O30297) Probable inorganic polyphosphate/ATP-NAD kinase (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase) Length = 249 Score = 30.0 bits (66), Expect = 3.9 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 3/29 (10%) Frame = -3 Query: 390 MASTG---SSGGPLVSSYPSCFLALPMPP 313 + STG S+GGP+V Y CF+ +P+ P Sbjct: 153 IGSTGYAFSAGGPVVEPYLECFILIPIAP 181
>Y7700_STRCO (Q9F1Y6) Hypothetical protein SCO7700| Length = 440 Score = 30.0 bits (66), Expect = 3.9 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = -3 Query: 462 TPLLGLGTGPSHLSPGLKLPMYPSMASTGSSGGPLVSSYPSCFLALPMPPPKP 304 TP G P P + P+ PS + T ++ L + +P + P PPP P Sbjct: 9 TPPPEQGPTPPTTLPDVPAPVIPSASVTSAASDFLAALHPPVTVPDPAPPPPP 61
>YG2B_YEAST (P53244) Hypothetical 65.5 kDa protein in VHT1-ROM1 intergenic| region Length = 586 Score = 29.3 bits (64), Expect = 6.6 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = -3 Query: 438 GPSHLSPGLKLPMY-PSMASTGSSGGPLVSSYPSCFLALPMPPP 310 G H PG +P++ + + G + G ++S + LALP PPP Sbjct: 490 GKIHFRPGELVPLFLTTYPAQGLTPGVELNSTTTAHLALPQPPP 533
>HXB1_MOUSE (P17919) Homeobox protein Hox-B1 (Hox-2.9)| Length = 297 Score = 29.3 bits (64), Expect = 6.6 Identities = 31/101 (30%), Positives = 36/101 (35%), Gaps = 23/101 (22%) Frame = -3 Query: 504 PASHQYNNMGYQQQTPLLGLGTG-----PSHLSPGLKLPMY-PSMA-STGSSGGPLVSSY 346 P+S N GY Q P LG PS +P P Y PS S G S G + Sbjct: 50 PSSALQQNSGYPVQQPPSSLGVSFPSPAPSGYAPAACNPSYGPSQYYSVGQSEGDGSYFH 109 Query: 345 PSCFLAL----------------PMPPPKPTKGERLKQTLA 271 PS + A P PPP+P G T A Sbjct: 110 PSSYGAQLGGLPDSYGAGGVGSGPYPPPQPPYGTEQTATFA 150
>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) (PRPL-2 protein) Length = 503 Score = 29.3 bits (64), Expect = 6.6 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 5/52 (9%) Frame = -3 Query: 438 GPSHLSPGLKLPMYPSMASTGSSGG-----PLVSSYPSCFLALPMPPPKPTK 298 GP SPG P +P T GG PL SS P F P PP P++ Sbjct: 209 GPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSP--FSNRPPLPPTPSR 258
>LZTS2_MOUSE (Q91YU6) Leucine zipper putative tumor suppressor 2| Length = 671 Score = 28.9 bits (63), Expect = 8.6 Identities = 24/72 (33%), Positives = 27/72 (37%), Gaps = 12/72 (16%) Frame = -3 Query: 459 PLLGLGTGPSHLSPGLKLPMYPSMASTGSSGGPLVS------------SYPSCFLALPMP 316 P G+ TGPSH G S STGS GG + S + P P Sbjct: 260 PARGVPTGPSHSDSGRS----SSSKSTGSLGGRVAGGLLGSGARASPGSSSGGDRSPPPP 315 Query: 315 PPKPTKGERLKQ 280 PP P E L Q Sbjct: 316 PPPPPSDEALLQ 327
>Y1290_METJA (Q58686) Hypothetical protein MJ1290| Length = 312 Score = 28.9 bits (63), Expect = 8.6 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 6/47 (12%) Frame = +1 Query: 16 YRISSFNVLAYGRLYHYKYNNALY------CPYKYNLSTGAATGTID 138 Y I S ++ Y ++Y Y Y+N LY + YN S TI+ Sbjct: 80 YHIKSAGIILYEKIYGYNYSNLLYRNSSNSLIFYYNFSVDKINYTIN 126
>CEBPB_HUMAN (P17676) CCAAT/enhancer-binding protein beta (C/EBP beta) (Nuclear| factor NF-IL6) (Transcription factor 5) Length = 345 Score = 28.9 bits (63), Expect = 8.6 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -3 Query: 399 YPSMASTGSSGGPLVSSYPSCFLALPMPPPKPTKGERLK 283 Y S+ G++ G L +P CF L PPP P LK Sbjct: 139 YVSLGRLGAAKGAL---HPGCFAPLHPPPPPPPPPAELK 174
>BADH_HORVU (Q40024) Betaine-aldehyde dehydrogenase (EC 1.2.1.8) (BADH)| Length = 505 Score = 28.9 bits (63), Expect = 8.6 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = -3 Query: 210 LAALCESIQLPSG*LNHLTG 151 L A+CE I LPSG LN +TG Sbjct: 198 LGAICEEIGLPSGVLNIITG 217
>ATG18_CRYNE (Q5KGQ2) Autophagy-related protein 18| Length = 423 Score = 28.9 bits (63), Expect = 8.6 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -3 Query: 363 PLVSSYPSCFLALPMPPPKPTKGERL 286 P SS P A+P PPP PT G+ L Sbjct: 160 PSASSTPLSSSAIPAPPPAPTTGDVL 185
>PCX3_MOUSE (Q8VI59) Pecanex-like protein 3| Length = 1620 Score = 28.9 bits (63), Expect = 8.6 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Frame = -3 Query: 462 TPLLGLGTGPSHLSPGLKLPMYPSMASTGSSGGPLVSSYPSCFLALPMP-PPKPTKGER 289 TP G+ L PG PS++ +G P + +P L P P P PT+G R Sbjct: 1451 TPENAAGSSEQPLPPGPSWGPRPSLSGSGDGRPPPLLQWPPPRLPGPPPASPAPTEGPR 1509
>CEBPB_BOVIN (O02755) CCAAT/enhancer-binding protein beta (C/EBP beta)| Length = 348 Score = 28.9 bits (63), Expect = 8.6 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -3 Query: 399 YPSMASTGSSGGPLVSSYPSCFLALPMPPPKPTKGERLK 283 Y S+ G++ G L +P CF L PPP P LK Sbjct: 139 YVSLGRLGAAKGAL---HPGCFAPLHPPPPPPPPPAELK 174
>FOXH1_HUMAN (O75593) Forkhead box protein H1 (Forkhead activin signal| transducer 1) (Fast-1) (hFAST-1) (Forkhead activin signal transducer 2) (Fast-2) Length = 365 Score = 28.9 bits (63), Expect = 8.6 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 6/64 (9%) Frame = -3 Query: 456 LLGLGTGPSHLSPGLKLPMYPSMASTGSSG------GPLVSSYPSCFLALPMPPPKPTKG 295 LLG G+G PGL P A TG+SG PL SS + P+P P +G Sbjct: 172 LLG-GSGEGAPWPGLAPQSSPVPAGTGNSGEEAVPTPPLPSSERPLWPLCPLPGPTRVEG 230 Query: 294 ERLK 283 E ++ Sbjct: 231 ETVQ 234
>GSPG_PSEAE (Q00514) General secretion pathway protein G precursor| (PilD-dependent protein pddA) Length = 142 Score = 28.9 bits (63), Expect = 8.6 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = -3 Query: 507 NPASHQYNNMGYQQQTPLLGLGTGPSHLSPGLKLPM-YPSMASTGSSGG 364 NP +N GY ++ P+ G +L+PG K P S+ + G GG Sbjct: 82 NPQPKNWNKDGYLKKLPVDPWGNPYQYLAPGTKGPFDLYSLGADGKEGG 130 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,997,041 Number of Sequences: 219361 Number of extensions: 1651265 Number of successful extensions: 4629 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 4413 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4608 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)