Clone Name | rbah61h06 |
---|---|
Clone Library Name | barley_pub |
>gb|AC121237.19| Medicago truncatula clone mth2-22g11, complete sequence Length = 127731 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 54 attatatcattacaaatataacaatg 79 |||||||| ||||||||||||||||| Sbjct: 114925 attatatccttacaaatataacaatg 114900
>dbj|AB231866.1| Branchiostoma floridae gene for zinc finger protein AmphiZic, complete cds Length = 155361 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 226 gagtgccagacctaattattgc 247 |||||||||||||||||||||| Sbjct: 42789 gagtgccagacctaattattgc 42810
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 acctaattattgcaacaaatt 255 ||||||||||||||||||||| Sbjct: 15843917 acctaattattgcaacaaatt 15843937 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 agattatcgcatatcctctt 31 |||||||||||||||||||| Sbjct: 32714902 agattatcgcatatcctctt 32714921
>dbj|AP004850.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1342_D02 Length = 125460 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 acctaattattgcaacaaatt 255 ||||||||||||||||||||| Sbjct: 101857 acctaattattgcaacaaatt 101877
>emb|AL929507.37| Zebrafish DNA sequence from clone DKEY-7C18 in linkage group 20, complete sequence Length = 214404 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 482 ttattatattggtgagatgct 502 ||||||||||||||||||||| Sbjct: 143619 ttattatattggtgagatgct 143639
>gb|AE000661.1|HUAE000661 Homo sapiens T-cell receptor alpha delta locus from bases 752679 to 1000555 (section 4 of 5) of the Complete Nucleotide Sequence Length = 247877 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 gtgagatgctgggttgaaga 512 |||||||||||||||||||| Sbjct: 27605 gtgagatgctgggttgaaga 27624
>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome Length = 1581384 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 aggaagagccaaaaaacatg 341 |||||||||||||||||||| Sbjct: 1559993 aggaagagccaaaaaacatg 1559974
>gb|AC097347.6| Homo sapiens X BAC RP11-1M18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160325 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 tatggacgattatatcatta 65 |||||||||||||||||||| Sbjct: 96642 tatggacgattatatcatta 96661
>dbj|AP004853.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1448_G06 Length = 136823 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 agattatcgcatatcctctt 31 |||||||||||||||||||| Sbjct: 43137 agattatcgcatatcctctt 43156
>gb|AC008369.1|AC008369 Drosophila melanogaster, chromosome 2R, region 52A4-52B4, P1 clones BACR48C01 and DS08592, complete sequence Length = 192366 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 taattgtatcgattcacaca 200 |||||||||||||||||||| Sbjct: 38442 taattgtatcgattcacaca 38423
>gb|AE003810.3| Drosophila melanogaster chromosome 2R, section 40 of 73 of the complete sequence Length = 271178 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 taattgtatcgattcacaca 200 |||||||||||||||||||| Sbjct: 115800 taattgtatcgattcacaca 115781
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 tcgacgggcgcggcgacagg 128 |||||||||||||||||||| Sbjct: 2802753 tcgacgggcgcggcgacagg 2802772
>ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus (TCRA/TCRD) on chromosome 14 Length = 1071646 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 gtgagatgctgggttgaaga 512 |||||||||||||||||||| Sbjct: 780283 gtgagatgctgggttgaaga 780302 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,680,570 Number of Sequences: 3902068 Number of extensions: 3680570 Number of successful extensions: 74319 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74197 Number of HSP's gapped (non-prelim): 122 length of query: 512 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 489 effective length of database: 17,143,297,704 effective search space: 8383072577256 effective search space used: 8383072577256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)