Clone Information

BLAST Search Result

Clone Name	rbah61g24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AF427791.1\| Hordeum vulgare Mla locus, complete sequence	545	e-152
2	ref\|XM_468178.1\| Oryza sativa (japonica cultivar-group), mRNA	180	4e-42
3	dbj\|AK065676.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	180	4e-42
4	gb\|AY108203.1\| Zea mays PCO088982 mRNA sequence	172	1e-39
5	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	111	3e-21
6	dbj\|AP005535.3\| Oryza sativa (japonica cultivar-group) genomic D...	111	3e-21
7	ref\|NM_179649.2\| Arabidopsis thaliana diacylglycerol kinase AT2G...	64	7e-07
8	gb\|AY141990.1\| Arabidopsis thaliana At2g18730/MSF3.11 mRNA, comp...	64	7e-07
9	gb\|AY064982.1\| Arabidopsis thaliana At2g18730/MSF3.11 mRNA, comp...	64	7e-07
10	emb\|BX820590.1\|CNS0A8R4 Arabidopsis thaliana Full-length cDNA Co...	64	7e-07
11	emb\|BX820215.1\|CNS0A8F8 Arabidopsis thaliana Full-length cDNA Co...	64	7e-07
12	emb\|BX819738.1\|CNS0A8G9 Arabidopsis thaliana Full-length cDNA Co...	64	7e-07
13	emb\|BX819736.1\|CNS0A8FK Arabidopsis thaliana Full-length cDNA Co...	64	7e-07
14	gb\|AC005724.3\| Arabidopsis thaliana chromosome 2 clone MSF3 map ...	50	0.010
15	gb\|AC010071.6\| Drosophila melanogaster 3L BAC RP98-18G16 (Roswel...	48	0.040
16	gb\|AE003531.3\| Drosophila melanogaster chromosome 3L, section 54...	48	0.040
17	emb\|AL049554.2\|HSJ514B11 Human DNA sequence from clone RP3-514B1...	44	0.63
18	gb\|AC136954.14\| Medicago truncatula clone mth2-7i1, complete seq...	42	2.5
19	emb\|AL354773.8\| Human DNA sequence from clone RP5-855L24 on chro...	42	2.5
20	gb\|AC010016.6\| Drosophila melanogaster 3L BAC RP98-10M10 (Roswel...	42	2.5
21	gb\|AC010558.4\| Drosophila melanogaster 3L BAC RPCI98-1K9 (Roswel...	42	2.5
22	gb\|AC008282.4\| Homo sapiens BAC clone RP11-516B14 from 2, comple...	42	2.5
23	gb\|AF173561.1\|AF173561 Ortalis guttata 12S ribosomal RNA gene, p...	42	2.5
24	emb\|CR936503.1\| Lactobacillus sakei strain 23K complete genome	42	2.5
25	gb\|AE003548.3\| Drosophila melanogaster chromosome 3L, section 37...	42	2.5
26	gb\|CP000226.1\| Drosophila melanogaster genomic scaffold 21100002...	42	2.5
27	ref\|XM_480995.1\| Oryza sativa (japonica cultivar-group), mRNA	40	9.8
28	gb\|AC151464.2\| Xenopus tropicalis BAC clone ISB1-213F14 containi...	40	9.8
29	gb\|AE008590.1\| Rickettsia conorii str. Malish 7, section 22 of 1...	40	9.8
30	gb\|AC124181.3\| Mus musculus BAC clone RP23-204B12 from chromosom...	40	9.8
31	gb\|AC115116.6\| Mus musculus BAC clone RP23-62I3 from chromosome ...	40	9.8
32	ref\|XM_644429.1\| Entamoeba histolytica HM-1:IMSS exonuclease (29...	40	9.8
33	gb\|CP000053.1\| Rickettsia felis URRWXCal2, complete genome	40	9.8
34	gb\|BC109524.1\| Bos taurus similar to ornithine decarboxylase-lik...	40	9.8
35	emb\|AL359649.8\| Human DNA sequence from clone RP11-65D24 on chro...	40	9.8
36	emb\|AL136443.11\| Human DNA sequence from clone RP3-342H9 on chro...	40	9.8
37	emb\|AL512647.14\| Mouse DNA sequence from clone RP23-47A2 on chro...	40	9.8
38	emb\|BX537166.6\| Zebrafish DNA sequence from clone DKEY-218I12 in...	40	9.8
39	dbj\|AK029761.1\| Mus musculus adult male testis cDNA, RIKEN full-...	40	9.8
40	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.8
41	ref\|XM_395220.2\| PREDICTED: Apis mellifera similar to ENSANGP000...	40	9.8
42	gb\|AC100870.6\| Homo sapiens chromosome 8, clone RP11-758H6, comp...	40	9.8
43	dbj\|AP005495.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.8
44	gb\|AC009960.10\| Homo sapiens BAC clone RP11-354N12 from 2, compl...	40	9.8
45	dbj\|AB084515.1\| Candida parapsilosis cpr-c1 gene for conjugated ...	40	9.8
46	dbj\|AP005799.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.8
47	dbj\|AP002797.3\| Homo sapiens genomic DNA, chromosome 11q, clone:...	40	9.8
48	ref\|NM_001038510.1\| Bos taurus similar to ornithine decarboxylas...	40	9.8
49	gb\|AC140349.4\| Mus musculus BAC clone RP24-250I16 from 12, compl...	40	9.8
50	gb\|AC142263.3\| Mus musculus BAC clone RP24-449M10 from 12, compl...	40	9.8
51	emb\|CR382132.1\| Yarrowia lipolytica chromosome F of strain CLIB1...	40	9.8
52	emb\|AL807815.3\| Mouse DNA sequence from clone RP23-207H16 on chr...	40	9.8

>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score =  545 bits (275), Expect = e-152
 Identities = 308/319 (96%)
 Strand = Plus / Plus

                                                                          
Query: 2      tgaaaatatgtttataaacatgcacatacattgaacgcaagttgacaaacaaattaacct 61
              ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 135004 tgaaaatatgtttataaacatgcacatacgttgaacgcaagttgacaaacaaattaacct 135063

                                                                          
Query: 62     agaggaagcatagttttgaccatcttaacaatcatctagaacacacaagtcacaaaaaga 121
              ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 135064 agaggaagcatagttttgagcatgttaacaatcatctagaacacacaagtcacaaaaaga 135123

                                                                          
Query: 122    taaggactattggttactatgagagacttcagatggtccagaaaacataagtttgtatct 181
              ||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 135124 taaggactattggttactacgagagacttcagatggtccagaacacacaagtttgtatct 135183

                                                                          
Query: 182    acatgcacaaagtgcaagctccaaaacactcgaaacaccaaatggtctacaagacaatat 241
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 135184 acatgcacaaagtgcaagctccaaaacactcgaaacaccaaatggtctacaagacaataa 135243

                                                                          
Query: 242    ggtctatgattacacgttgattggtccataaacgctagagagtcatcatgtccatgtgca 301
              |||| ||||||||| |||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 135244 ggtccatgattacaggttggttggtccataaacgctggagagtcatcatgtccatgtgca 135303

                                 
Query: 302    tcaataggttgagtacctg 320
              |||||||||||||||||||
Sbjct: 135304 tcaataggttgagtacctg 135322



 Score =  545 bits (275), Expect = e-152
 Identities = 308/319 (96%)
 Strand = Plus / Plus

                                                                         
Query: 2     tgaaaatatgtttataaacatgcacatacattgaacgcaagttgacaaacaaattaacct 61
             ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 95291 tgaaaatatgtttataaacatgcacatacgttgaacgcaagttgacaaacaaattaacct 95350

                                                                         
Query: 62    agaggaagcatagttttgaccatcttaacaatcatctagaacacacaagtcacaaaaaga 121
             ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 95351 agaggaagcatagttttgagcatgttaacaatcatctagaacacacaagtcacaaaaaga 95410

                                                                         
Query: 122   taaggactattggttactatgagagacttcagatggtccagaaaacataagtttgtatct 181
             ||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 95411 taaggactattggttactacgagagacttcagatggtccagaacacacaagtttgtatct 95470

                                                                         
Query: 182   acatgcacaaagtgcaagctccaaaacactcgaaacaccaaatggtctacaagacaatat 241
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 95471 acatgcacaaagtgcaagctccaaaacactcgaaacaccaaatggtctacaagacaataa 95530

                                                                         
Query: 242   ggtctatgattacacgttgattggtccataaacgctagagagtcatcatgtccatgtgca 301
             |||| ||||||||| |||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 95531 ggtccatgattacaggttggttggtccataaacgctggagagtcatcatgtccatgtgca 95590

                                
Query: 302   tcaataggttgagtacctg 320
             |||||||||||||||||||
Sbjct: 95591 tcaataggttgagtacctg 95609

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>ref|XM_468178.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1801

 Score =  180 bits (91), Expect = 4e-42
 Identities = 169/195 (86%)
 Strand = Plus / Minus

                                                                       
Query: 354 tgagatatcgctttacagctgaatgccaaccaaaggggaaaaagccaccccatccaaatg 413
           ||||||| ||||| ||||||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct: 729 tgagataacgcttcacagctgaacgccaaccaaagggaaaagagccaccccatccaaatg 670

                                                                       
Query: 414 atctagcgaggtcatttcctgtcccaagtggaatgattcttgtgggaggaactggtttcc 473
           |||| || || ||||||||||| |||||||| ||||| | |||||| ||||||||||  |
Sbjct: 669 atctggcaagatcatttcctgtaccaagtgggatgatacctgtgggtggaactggttctc 610

                                                                       
Query: 474 ttttcgacttattaagttcttggagacatccaaatactcaaccaacagtgccatcacctc 533
           ||||| || ||| ||| |||  |||||| |||| ||| |||||||| ||||||||||| |
Sbjct: 609 ttttcaacctataaagatctgtgagacagccaagtacccaaccaactgtgccatcaccac 550

                          
Query: 534 cagcaaccataatcc 548
           |||||||||||||||
Sbjct: 549 cagcaaccataatcc 535

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>dbj|AK065676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036I11, full
           insert sequence
          Length = 1802

 Score =  180 bits (91), Expect = 4e-42
 Identities = 169/195 (86%)
 Strand = Plus / Minus

                                                                       
Query: 354 tgagatatcgctttacagctgaatgccaaccaaaggggaaaaagccaccccatccaaatg 413
           ||||||| ||||| ||||||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct: 729 tgagataacgcttcacagctgaacgccaaccaaagggaaaagagccaccccatccaaatg 670

                                                                       
Query: 414 atctagcgaggtcatttcctgtcccaagtggaatgattcttgtgggaggaactggtttcc 473
           |||| || || ||||||||||| |||||||| ||||| | |||||| ||||||||||  |
Sbjct: 669 atctggcaagatcatttcctgtaccaagtgggatgatacctgtgggtggaactggttctc 610

                                                                       
Query: 474 ttttcgacttattaagttcttggagacatccaaatactcaaccaacagtgccatcacctc 533
           ||||| || ||| ||| |||  |||||| |||| ||| |||||||| ||||||||||| |
Sbjct: 609 ttttcaacctataaagatctgtgagacagccaagtacccaaccaactgtgccatcaccac 550

                          
Query: 534 cagcaaccataatcc 548
           |||||||||||||||
Sbjct: 549 cagcaaccataatcc 535

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>gb|AY108203.1| Zea mays PCO088982 mRNA sequence
          Length = 1447

 Score =  172 bits (87), Expect = 1e-39
 Identities = 168/195 (86%)
 Strand = Plus / Minus

                                                                       
Query: 354 tgagatatcgctttacagctgaatgccaaccaaaggggaaaaagccaccccatccaaatg 413
           ||||||| ||||||||||||||  ||||||||||||| ||| |||||||||||||||| |
Sbjct: 243 tgagataacgctttacagctgagcgccaaccaaagggaaaagagccaccccatccaaacg 184

                                                                       
Query: 414 atctagcgaggtcatttcctgtcccaagtggaatgattcttgtgggaggaactggtttcc 473
           ||||||| || ||||||||||| |||||||||||||||| ||| || ||||| |||| ||
Sbjct: 183 atctagcaagatcatttcctgtaccaagtggaatgattcctgtaggtggaaccggttccc 124

                                                                       
Query: 474 ttttcgacttattaagttcttggagacatccaaatactcaaccaacagtgccatcacctc 533
           |||||  ||||| ||| |||  |||||||||||  || |||||||| || |||||||| |
Sbjct: 123 ttttcatcttataaagatctgagagacatccaagcacccaaccaactgtaccatcacccc 64

                          
Query: 534 cagcaaccataatcc 548
           ||||||||| |||||
Sbjct: 63  cagcaaccacaatcc 49

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  111 bits (56), Expect = 3e-21
 Identities = 119/140 (85%)
 Strand = Plus / Plus

                                                                            
Query: 402      cccatccaaatgatctagcgaggtcatttcctgtcccaagtggaatgattcttgtgggag 461
                |||||||||||||||| || || ||||||||||| |||||||| ||||| | |||||| |
Sbjct: 33500366 cccatccaaatgatctggcaagatcatttcctgtaccaagtgggatgatacctgtgggtg 33500425

                                                                            
Query: 462      gaactggtttccttttcgacttattaagttcttggagacatccaaatactcaaccaacag 521
                |||||||||  |||||| || ||| ||| |||  |||||| |||| ||| |||||||| |
Sbjct: 33500426 gaactggttctcttttcaacctataaagatctgtgagacagccaagtacccaaccaactg 33500485

                                    
Query: 522      tgccatcacctccagcaacc 541
                |||||||||| |||||||||
Sbjct: 33500486 tgccatcaccaccagcaacc 33500505



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                  
Query: 354      tgagatatcgctttacagctgaatgccaaccaaaggggaaaaagccaccc 403
                ||||||| ||||| ||||||||| ||||||||||||| ||| ||||||||
Sbjct: 33500193 tgagataacgcttcacagctgaacgccaaccaaagggaaaagagccaccc 33500242

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>dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0054K20
          Length = 153584

 Score =  111 bits (56), Expect = 3e-21
 Identities = 119/140 (85%)
 Strand = Plus / Plus

                                                                         
Query: 402   cccatccaaatgatctagcgaggtcatttcctgtcccaagtggaatgattcttgtgggag 461
             |||||||||||||||| || || ||||||||||| |||||||| ||||| | |||||| |
Sbjct: 75241 cccatccaaatgatctggcaagatcatttcctgtaccaagtgggatgatacctgtgggtg 75300

                                                                         
Query: 462   gaactggtttccttttcgacttattaagttcttggagacatccaaatactcaaccaacag 521
             |||||||||  |||||| || ||| ||| |||  |||||| |||| ||| |||||||| |
Sbjct: 75301 gaactggttctcttttcaacctataaagatctgtgagacagccaagtacccaaccaactg 75360

                                 
Query: 522   tgccatcacctccagcaacc 541
             |||||||||| |||||||||
Sbjct: 75361 tgccatcaccaccagcaacc 75380



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                               
Query: 354   tgagatatcgctttacagctgaatgccaaccaaaggggaaaaagccaccc 403
             ||||||| ||||| ||||||||| ||||||||||||| ||| ||||||||
Sbjct: 75068 tgagataacgcttcacagctgaacgccaaccaaagggaaaagagccaccc 75117

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>ref|NM_179649.2| Arabidopsis thaliana diacylglycerol kinase AT2G18730 mRNA, complete
           cds
          Length = 1845

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                               
Query: 497 agacatccaaatactcaaccaacagtgccatcacctccagcaaccataatcc 548
           ||||||||||  || ||||||||||| ||||||||||| |||||||||||||
Sbjct: 673 agacatccaagaacccaaccaacagtaccatcacctcctgcaaccataatcc 622

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>gb|AY141990.1| Arabidopsis thaliana At2g18730/MSF3.11 mRNA, complete cds
          Length = 1467

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                               
Query: 497 agacatccaaatactcaaccaacagtgccatcacctccagcaaccataatcc 548
           ||||||||||  || ||||||||||| ||||||||||| |||||||||||||
Sbjct: 527 agacatccaagaacccaaccaacagtaccatcacctcctgcaaccataatcc 476

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>gb|AY064982.1| Arabidopsis thaliana At2g18730/MSF3.11 mRNA, complete cds
          Length = 1785

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                               
Query: 497 agacatccaaatactcaaccaacagtgccatcacctccagcaaccataatcc 548
           ||||||||||  || ||||||||||| ||||||||||| |||||||||||||
Sbjct: 616 agacatccaagaacccaaccaacagtaccatcacctcctgcaaccataatcc 565

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>emb|BX820590.1|CNS0A8R4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH50ZC07 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1742

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                               
Query: 497 agacatccaaatactcaaccaacagtgccatcacctccagcaaccataatcc 548
           ||||||||||  || ||||||||||| ||||||||||| |||||||||||||
Sbjct: 614 agacatccaagaacccaaccaacagtaccatcacctcctgcaaccataatcc 563

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>emb|BX820215.1|CNS0A8F8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS93ZG01 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1665

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                               
Query: 497 agacatccaaatactcaaccaacagtgccatcacctccagcaaccataatcc 548
           ||||||||||  || ||||||||||| ||||||||||| |||||||||||||
Sbjct: 673 agacatccaagaacccaaccaacagtaccatcacctcctgcaaccataatcc 622

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>emb|BX819738.1|CNS0A8G9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS21ZD10 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1817

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                               
Query: 497 agacatccaaatactcaaccaacagtgccatcacctccagcaaccataatcc 548
           ||||||||||  || ||||||||||| ||||||||||| |||||||||||||
Sbjct: 658 agacatccaagaacccaaccaacagtaccatcacctcctgcaaccataatcc 607

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>emb|BX819736.1|CNS0A8FK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS21ZC10 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1828

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                               
Query: 497 agacatccaaatactcaaccaacagtgccatcacctccagcaaccataatcc 548
           ||||||||||  || ||||||||||| ||||||||||| |||||||||||||
Sbjct: 672 agacatccaagaacccaaccaacagtaccatcacctcctgcaaccataatcc 621

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>gb|AC005724.3| Arabidopsis thaliana chromosome 2 clone MSF3 map CIC06E08, complete
             sequence
          Length = 88413

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                          
Query: 497   agacatccaaatactcaaccaacagtgccatcacctccagcaacc 541
             ||||||||||  || ||||||||||| ||||||||||| ||||||
Sbjct: 39786 agacatccaagaacccaaccaacagtaccatcacctcctgcaacc 39742

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>gb|AC010071.6| Drosophila melanogaster 3L BAC RP98-18G16 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 172540

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 5     aaatatgtttataaacatgcacat 28
             ||||||||||||||||||||||||
Sbjct: 16235 aaatatgtttataaacatgcacat 16258

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>gb|AE003531.3| Drosophila melanogaster chromosome 3L, section 54 of 83 of the
            complete sequence
          Length = 271869

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 5    aaatatgtttataaacatgcacat 28
            ||||||||||||||||||||||||
Sbjct: 5048 aaatatgtttataaacatgcacat 5025

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>emb|AL049554.2|HSJ514B11 Human DNA sequence from clone RP3-514B11 on chromosome 6q16.1-21,
             complete sequence
          Length = 100494

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 376   atgccaaccaaaggggaaaaagccac 401
             ||||||| ||||||||||||||||||
Sbjct: 80621 atgccaagcaaaggggaaaaagccac 80646

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>gb|AC136954.14| Medicago truncatula clone mth2-7i1, complete sequence
          Length = 113505

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 497   agacatccaaatactcaaccaacagtgccatcacctccagcaacc 541
             |||||||| || || || ||||| || ||||||||||||||||||
Sbjct: 50473 agacatcctaacacccagccaactgtaccatcacctccagcaacc 50429



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 425   tcatttcctgtcccaagtgg 444
             ||||||||||||||||||||
Sbjct: 50545 tcatttcctgtcccaagtgg 50526

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>emb|AL354773.8| Human DNA sequence from clone RP5-855L24 on chromosome 20 Contains part
             of the C20orf133 gene, complete sequence
          Length = 117609

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 3     gaaaatatgtttataaacatg 23
             |||||||||||||||||||||
Sbjct: 76784 gaaaatatgtttataaacatg 76764

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>gb|AC010016.6| Drosophila melanogaster 3L BAC RP98-10M10 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 174616

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 203   caaaacactcgaaacaccaaa 223
             |||||||||||||||||||||
Sbjct: 16971 caaaacactcgaaacaccaaa 16991

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>gb|AC010558.4| Drosophila melanogaster 3L BAC RPCI98-1K9 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 170356

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 203    caaaacactcgaaacaccaaa 223
              |||||||||||||||||||||
Sbjct: 135455 caaaacactcgaaacaccaaa 135475

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>gb|AC008282.4| Homo sapiens BAC clone RP11-516B14 from 2, complete sequence
          Length = 203241

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 175   tgtatctacatgcacaaagtg 195
             |||||||||||||||||||||
Sbjct: 83660 tgtatctacatgcacaaagtg 83680

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>gb|AF173561.1|AF173561 Ortalis guttata 12S ribosomal RNA gene, partial sequence; tRNA-Val
            gene, complete sequence; 16S ribosomal RNA gene, complete
            sequence; and tRNA-Leu gene, partial sequence;
            mitochondrial genes for mitochondrial products
          Length = 2669

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 601  ctccaaacaacccaggccata 621
            |||||||||||||||||||||
Sbjct: 2229 ctccaaacaacccaggccata 2249

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>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome
          Length = 1884661

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 618     catagcgaacaaaattagaac 638
               |||||||||||||||||||||
Sbjct: 1468519 catagcgaacaaaattagaac 1468539

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>gb|AE003548.3| Drosophila melanogaster chromosome 3L, section 37 of 83 of the complete
              sequence
          Length = 244140

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 203    caaaacactcgaaacaccaaa 223
              |||||||||||||||||||||
Sbjct: 146740 caaaacactcgaaacaccaaa 146760

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>gb|CP000226.1| Drosophila melanogaster genomic scaffold 211000022280776
          Length = 277780

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 192   agtgcaagctccaaaacactc 212
             |||||||||||||||||||||
Sbjct: 88698 agtgcaagctccaaaacactc 88718

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>ref|XM_480995.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1584

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 425 tcatttcctgtcccaagtgg 444
           ||||||||||||||||||||
Sbjct: 713 tcatttcctgtcccaagtgg 694

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>gb|AC151464.2| Xenopus tropicalis BAC clone ISB1-213F14 containing three genes
            similar to X. laevis enhancer of split, complete cds,
            complete sequence
          Length = 22143

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    tgaaaatatgtttataaaca 21
            ||||||||||||||||||||
Sbjct: 8823 tgaaaatatgtttataaaca 8804

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>gb|AE008590.1| Rickettsia conorii str. Malish 7, section 22 of 114 of the complete
            genome
          Length = 12509

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 53   aattaacctagaggaagcat 72
            ||||||||||||||||||||
Sbjct: 8416 aattaacctagaggaagcat 8397

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>gb|AC124181.3| Mus musculus BAC clone RP23-204B12 from chromosome 18, complete sequence
          Length = 220244

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 2      tgaaaatatgtttataaacatgcacata 29
              ||||| ||||||||| ||||||||||||
Sbjct: 130919 tgaaactatgtttatgaacatgcacata 130892

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>gb|AC115116.6| Mus musculus BAC clone RP23-62I3 from chromosome 1, complete sequence
          Length = 231896

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    aaagtgcaagctccaaaaca 209
              ||||||||||||||||||||
Sbjct: 150469 aaagtgcaagctccaaaaca 150488

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>ref|XM_644429.1| Entamoeba histolytica HM-1:IMSS exonuclease (293.t00010)  partial
            mRNA
          Length = 1887

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 280  agagtcatcatgtccatgtgcatcaata 307
            |||| |||| ||||||||||||||||||
Sbjct: 1563 agagacatcttgtccatgtgcatcaata 1536

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>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome
          Length = 1485148

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 53      aattaacctagaggaagcat 72
               ||||||||||||||||||||
Sbjct: 1152626 aattaacctagaggaagcat 1152645

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>gb|BC109524.1| Bos taurus similar to ornithine decarboxylase-like protein, mRNA
            (cDNA clone MGC:134604 IMAGE:8052844), complete cds
          Length = 2191

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 451  tcttgtgggaggaactggtttcct 474
            ||||| ||||||||||||||||||
Sbjct: 1495 tcttgggggaggaactggtttcct 1472

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>emb|AL359649.8| Human DNA sequence from clone RP11-65D24 on chromosome 13 Contains 2
              novel genes, complete sequence
          Length = 144792

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    agatggtccagaaaacataa 171
              ||||||||||||||||||||
Sbjct: 107530 agatggtccagaaaacataa 107511

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>emb|AL136443.11| Human DNA sequence from clone RP3-342H9 on chromosome 6 Contains a
            CpG island, complete sequence
          Length = 74354

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 499  acatccaaatactcaaccaacagt 522
            ||||||||| ||||||||||||||
Sbjct: 1355 acatccaaagactcaaccaacagt 1332

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>emb|AL512647.14| Mouse DNA sequence from clone RP23-47A2 on chromosome 13 Contains
            part of a novel gene (6620401C13Rik), complete sequence
          Length = 199848

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 427  atttcctgtcccaagtggaa 446
            ||||||||||||||||||||
Sbjct: 4310 atttcctgtcccaagtggaa 4329

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>emb|BX537166.6| Zebrafish DNA sequence from clone DKEY-218I12 in linkage group 16,
             complete sequence
          Length = 60424

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 167   cataagtttgtatctacatgcaca 190
             ||||||||||||| ||||||||||
Sbjct: 40988 cataagtttgtatgtacatgcaca 40965

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>dbj|AK029761.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4930534E01 product:unclassifiable, full
            insert sequence
          Length = 3301

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 91   aatcatctagaacacacaagtcacaaaa 118
            |||||| ||||||||| |||||||||||
Sbjct: 2970 aatcatttagaacacaaaagtcacaaaa 2997

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 425     tcatttcctgtcccaagtgg 444
               ||||||||||||||||||||
Sbjct: 9126315 tcatttcctgtcccaagtgg 9126334

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>ref|XM_395220.2| PREDICTED: Apis mellifera similar to ENSANGP00000006622
           (LOC411753), mRNA
          Length = 2904

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 129 tattggttactatgagagac 148
           ||||||||||||||||||||
Sbjct: 944 tattggttactatgagagac 963

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>gb|AC100870.6| Homo sapiens chromosome 8, clone RP11-758H6, complete sequence
          Length = 188873

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 518   acagtgccatcacctccagc 537
             ||||||||||||||||||||
Sbjct: 79541 acagtgccatcacctccagc 79560

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>dbj|AP005495.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBb0003H03
          Length = 157905

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 425    tcatttcctgtcccaagtgg 444
              ||||||||||||||||||||
Sbjct: 136625 tcatttcctgtcccaagtgg 136644

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>gb|AC009960.10| Homo sapiens BAC clone RP11-354N12 from 2, complete sequence
          Length = 207983

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    caaaaagataaggactattg 133
              ||||||||||||||||||||
Sbjct: 158928 caaaaagataaggactattg 158909

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>dbj|AB084515.1| Candida parapsilosis cpr-c1 gene for conjugated polyketone
           reductase C1, complete cds
          Length = 1480

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 204 aaaacactcgaaacaccaaa 223
           ||||||||||||||||||||
Sbjct: 633 aaaacactcgaaacaccaaa 652

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>dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0012K14
          Length = 155544

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 425   tcatttcctgtcccaagtgg 444
             ||||||||||||||||||||
Sbjct: 61809 tcatttcctgtcccaagtgg 61828

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>dbj|AP002797.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-779P3, complete
             sequences
          Length = 185316

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 6     aatatgtttataaacatgcacata 29
             ||||||| ||||||||||||||||
Sbjct: 99323 aatatgtatataaacatgcacata 99346

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>ref|NM_001038510.1| Bos taurus similar to ornithine decarboxylase-like protein
            (MGC134604), mRNA
          Length = 2191

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 451  tcttgtgggaggaactggtttcct 474
            ||||| ||||||||||||||||||
Sbjct: 1495 tcttgggggaggaactggtttcct 1472

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>gb|AC140349.4| Mus musculus BAC clone RP24-250I16 from 12, complete sequence
          Length = 177344

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 117   aaagataaggactattggttacta 140
             ||||| ||||||||||||||||||
Sbjct: 20258 aaagagaaggactattggttacta 20235

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>gb|AC142263.3| Mus musculus BAC clone RP24-449M10 from 12, complete sequence
          Length = 182060

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 117    aaagataaggactattggttacta 140
              ||||| ||||||||||||||||||
Sbjct: 153522 aaagagaaggactattggttacta 153499

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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 147     acttcagatggtccagaaaa 166
               ||||||||||||||||||||
Sbjct: 2725479 acttcagatggtccagaaaa 2725498

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>emb|AL807815.3| Mouse DNA sequence from clone RP23-207H16 on chromosome 4, complete
             sequence
          Length = 206914

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 91    aatcatctagaacacacaagtcacaaaa 118
             |||||| ||||||||| |||||||||||
Sbjct: 46303 aatcatttagaacacaaaagtcacaaaa 46330


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,751,381
Number of Sequences: 3902068
Number of extensions: 6751381
Number of successful extensions: 170903
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 170616
Number of HSP's gapped (non-prelim): 287
length of query: 719
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 696
effective length of database: 17,143,297,704
effective search space: 11931735201984
effective search space used: 11931735201984
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result