Clone Name | rbah61g22 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_477795.1| Oryza sativa (japonica cultivar-group), mRNA Length = 804 Score = 71.9 bits (36), Expect = 1e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 227 ggtatctccttgcagggctgcgactccttcgccttctggaacaagacg 274 |||||||||||||||||||| | |||||||||||||||||| |||||| Sbjct: 743 ggtatctccttgcagggctgggtctccttcgccttctggaagaagacg 696
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 71.9 bits (36), Expect = 1e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 227 ggtatctccttgcagggctgcgactccttcgccttctggaacaagacg 274 |||||||||||||||||||| | |||||||||||||||||| |||||| Sbjct: 14474267 ggtatctccttgcagggctgggtctccttcgccttctggaagaagacg 14474314
>dbj|AP005200.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0673E01 Length = 125909 Score = 71.9 bits (36), Expect = 1e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 227 ggtatctccttgcagggctgcgactccttcgccttctggaacaagacg 274 |||||||||||||||||||| | |||||||||||||||||| |||||| Sbjct: 94598 ggtatctccttgcagggctgggtctccttcgccttctggaagaagacg 94645
>dbj|AK101316.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034D03, full insert sequence Length = 1218 Score = 71.9 bits (36), Expect = 1e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 227 ggtatctccttgcagggctgcgactccttcgccttctggaacaagacg 274 |||||||||||||||||||| | |||||||||||||||||| |||||| Sbjct: 823 ggtatctccttgcagggctgggtctccttcgccttctggaagaagacg 776
>dbj|AK061408.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A10, full insert sequence Length = 1053 Score = 71.9 bits (36), Expect = 1e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 227 ggtatctccttgcagggctgcgactccttcgccttctggaacaagacg 274 |||||||||||||||||||| | |||||||||||||||||| |||||| Sbjct: 822 ggtatctccttgcagggctgggtctccttcgccttctggaagaagacg 775
>dbj|AK061383.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-H08, full insert sequence Length = 1230 Score = 71.9 bits (36), Expect = 1e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 227 ggtatctccttgcagggctgcgactccttcgccttctggaacaagacg 274 |||||||||||||||||||| | |||||||||||||||||| |||||| Sbjct: 834 ggtatctccttgcagggctgggtctccttcgccttctggaagaagacg 787
>gb|AY103818.1| Zea mays PCO124949 mRNA sequence Length = 1251 Score = 71.9 bits (36), Expect = 1e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 230 atctccttgcagggctgcgactccttcgccttctggaacaagac 273 ||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 948 atctccttgcagggctgtgactccttcgccttctggaagaagac 905
>dbj|AB037153.1| Oryza sativa (japonica cultivar-group) OsRPN12 mRNA for 26S proteasome regulatory particle non-ATPase subunit12, complete cds Length = 1063 Score = 71.9 bits (36), Expect = 1e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 227 ggtatctccttgcagggctgcgactccttcgccttctggaacaagacg 274 |||||||||||||||||||| | |||||||||||||||||| |||||| Sbjct: 818 ggtatctccttgcagggctgggtctccttcgccttctggaagaagacg 771
>gb|BT016262.1| Zea mays clone Contig95 mRNA sequence Length = 1020 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 230 atctccttgcagggctgcgactccttcgccttctggaacaagac 273 ||||||||||||||||| || ||||||||||||||||| ||||| Sbjct: 742 atctccttgcagggctgtgattccttcgccttctggaagaagac 699
>emb|AL590398.9| Human DNA sequence from clone RP11-446G24 on chromosome 6 Contains the 5' end of the HDAC2 gene for histone deacetylase 2 (human transcriptional regulator homolog RPD3, YAF1), two putative novel genes, a pseudogene similar to mouse D7Rp2e (DNA segment, Chr7, Roswell Park 2 complex, expressed) and a CpG island, complete sequence Length = 78366 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 ttgaaagaaaagagaggcaaa 165 ||||||||||||||||||||| Sbjct: 12917 ttgaaagaaaagagaggcaaa 12937
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 0.91 Identities = 24/25 (96%) Strand = Plus / Minus Query: 198 caagggtctggttgatgacgggcgc 222 |||||||||||| |||||||||||| Sbjct: 4808975 caagggtctggtcgatgacgggcgc 4808951
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 42.1 bits (21), Expect = 0.91 Identities = 24/25 (96%) Strand = Plus / Minus Query: 198 caagggtctggttgatgacgggcgc 222 |||||||||||| |||||||||||| Sbjct: 4813886 caagggtctggtcgatgacgggcgc 4813862
>emb|AL590727.5| Human DNA sequence from clone RP11-111D3 on chromosome 6 Contains a eukaryotic translation initiation factor 4E binding protein pseudogene and part of a novel gene, complete sequence Length = 127913 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 cttttgacatttcacagtat 31 |||||||||||||||||||| Sbjct: 108580 cttttgacatttcacagtat 108561
>gb|AF535436.1| HIV-1 isolate 88USMF880113sg from USA envelope glycoprotein (env) gene, partial cds Length = 602 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 aaccaaaatagtacagctga 93 |||||||||||||||||||| Sbjct: 49 aaccaaaatagtacagctga 68
>gb|AC182752.1| Gasterosteus aculeatus clone VMRC26-161K14, complete sequence Length = 162574 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 agcactttggaaacagtggg 58 |||||||||||||||||||| Sbjct: 36157 agcactttggaaacagtggg 36176
>gb|AC135782.4| Homo sapiens chromosome 16 clone CTD-2555A7, complete sequence Length = 163550 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 tccacctcttcatgggaaattcag 137 |||||||||||||||||| ||||| Sbjct: 47235 tccacctcttcatgggaatttcag 47258
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 agggctgcgactccttcgcc 259 |||||||||||||||||||| Sbjct: 7646676 agggctgcgactccttcgcc 7646695
>gb|AC122538.4| Mus musculus BAC clone RP24-548J11 from 16, complete sequence Length = 209585 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 aattcagtccaaagttgaaagaaa 154 |||||||||||||| ||||||||| Sbjct: 92931 aattcagtccaaagctgaaagaaa 92908
>dbj|AP006096.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT10G09, TM0173b, complete sequence Length = 66866 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 taatccacctcttcatgggaaatt 134 |||||||||||||||| ||||||| Sbjct: 36400 taatccacctcttcattggaaatt 36377 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,744,647 Number of Sequences: 3902068 Number of extensions: 3744647 Number of successful extensions: 85854 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85778 Number of HSP's gapped (non-prelim): 76 length of query: 276 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 254 effective length of database: 17,147,199,772 effective search space: 4355388742088 effective search space used: 4355388742088 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)