>MAD18_ORYSA (Q6Z4G0) MADS-box transcription factor 18 (OsMADS18) (MADS-box|
           protein 2) (OsMADS2) (MADS-box protein 28) (OsMADS28)
           (FDRMADS7)
          Length = 249

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 20/29 (68%), Positives = 21/29 (72%)
 Frame = -1

Query: 488 QSRGGGDPEPQXSPAQANNSNLPPXMLRT 402
           Q RG G+ E Q SPAQA NS LPP MLRT
Sbjct: 218 QPRGSGESEAQPSPAQAGNSKLPPWMLRT 246

>SHC3_RAT (O70143) SHC transforming protein 3 (SH2 domain protein C3) (Src|
           homology 2 domain-containing transforming protein C3)
           (Neuronal Shc) (N-Shc)
          Length = 594

 Score = 33.1 bits (74), Expect = 0.55
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -2

Query: 553 RTAQDSMAPXNIGYLCFHLGHINLEEEGIQNLSXPQHKQTTAICPRXCSAPS 398
           R A D   P ++G+L   + H+ L   G++ LS    ++  A     CSAPS
Sbjct: 51  RKAPDD-GPGSLGHLLHKVSHLKLSSSGLRGLSSAARERAGARLSGSCSAPS 101

>SHC3_HUMAN (Q92529) SHC transforming protein 3 (SH2 domain protein C3) (Src|
           homology 2 domain-containing transforming protein C3)
           (Neuronal Shc) (N-Shc) (Protein Rai)
          Length = 594

 Score = 33.1 bits (74), Expect = 0.55
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -2

Query: 553 RTAQDSMAPXNIGYLCFHLGHINLEEEGIQNLSXPQHKQTTAICPRXCSAPS 398
           R A D   P ++G+L   + H+ L   G++ LS    ++  A     CSAPS
Sbjct: 54  RKAPDD-GPGSLGHLLHKVSHLKLSSSGLRGLSSAARERAGARLSGSCSAPS 104

>DML2_ARATH (Q9SR66) DEMETER-like protein 2|
          Length = 1309

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
 Frame = +1

Query: 1   SFNNNIKRRQRPFAFLQRMEYKNRVNV*NHTANPL------KLTHESPTTRSCSSISEKK 162
           S  NN++   +P +  +R+  +N   + N +   L       +   S    S SS+S + 
Sbjct: 32  SIFNNMQHNHQPDSDRRRLSLENLPGLYNMSCTQLLALANATVATGSSIGASSSSLSSQH 91

Query: 163 GTETW----KQDTAPYSAGKAQDRKTPFTL*QRHMVLLVATPEAI 285
            T++W    K D+ P++  K Q ++   +  Q+ +  L  TPE +
Sbjct: 92  PTDSWINSWKMDSNPWTLSKMQKQQYDVSTPQKFLCDLNLTPEEL 136

>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix protein|
            p17 (MA); Capsid protein p24 (CA); p2 spacer peptide;
            Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6
            pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse
            trans
          Length = 1439

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 146  RSAKKKELKRGNKTLLPIVQEKL----KTGRPHSPCSKDTWSYWW 268
            +SA   ++K+  + +  I QE +    KT +   P  K+TW  WW
Sbjct: 949  KSAHTNDVKQLTEAVQKIAQESIVIWGKTPKFRLPIQKETWEAWW 993

>POL_HV1OY (P20892) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix protein|
            p17 (MA); Capsid protein p24 (CA); p2 spacer peptide;
            Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6
            pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse
            trans
          Length = 1433

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +2

Query: 146  RSAKKKELKRGNKTLLPIVQEKL----KTGRPHSPCSKDTWSYWW 268
            R A   ++K+  + +  I QE +    KT +   P  K+TW  WW
Sbjct: 943  RGAHTNDVKQLTEAVQKITQESIVIWGKTPKFKLPIQKETWEAWW 987

>AEPE_BPA18 (Q37976) L-alanyl-D-glutamate peptidase (EC 3.4.-.-)|
          Length = 281

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 179 NKTLLPIVQEKLKTGRPHSPCSKDTW 256
           N TLL     KLK G+PH+P SK+T+
Sbjct: 189 NTTLLA----KLKAGKPHTPASKNTY 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,668,900
Number of Sequences: 219361
Number of extensions: 1863030
Number of successful extensions: 5201
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5201
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)