>emb|AJ249143.1|HVU249143 Hordeum vulgare mRNA for MADS-box protein 3 (m3 gene)
          Length = 1540

 Score =  896 bits (452), Expect = 0.0
 Identities = 482/496 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1    tcttttaataacaatataaagagaaggcagcgcccttttgcatttttacaacggatggaa 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1497 tcttttaataacaatataaagagaaggcagcgcccttttgcatttttacaacggatggaa 1438

                                                                        
Query: 61   tacaaaaaccgtgtcaacgtgtaaaaccataccgcaaatccattaaagcttacacacgaa 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1437 tacaaaaaccgtgtcaacgtgtaaaaccataccgcaaatccattaaagcttacacacgaa 1378

                                                                        
Query: 121  agtccaaccacaagatcgtgctcatcgatcagcgnnnnnnnnggaactgaaacgtggaaa 180
            ||||||||||||||||||||||||||||||||||        ||||||||||||||||||
Sbjct: 1377 agtccaaccacaagatcgtgctcatcgatcagcgaaaaaaagggaactgaaacgtggaaa 1318

                                                                        
Query: 181  caagacactgctccctatagtgcaggaaaagctcaagacaggaagaccccattcaccctg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1317 caagacactgctccctatagtgcaggaaaagctcaagacaggaagaccccattcaccctg 1258

                                                                        
Query: 241  tagcaaagacacatggtcttattggtggctacaccggaagccattgccggagatggactg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1257 tagcaaagacacatggtcttattggtggctacaccggaagccattgccggagatggactg 1198

                                                                        
Query: 301  cacaccggcagctagcttccatagtgggcgcgtgtcaggcgccattgtcgccttcaggtg 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1197 cacaccggcagctagcttccatagtgggcgcgtgtcaggcgccattgtcgccttcaggtg 1138

                                                                        
Query: 361  gagtcgtatgangctgtcgccagccttcatntgttgccgatggtgcggagcatncacggg 420
            ||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||| 
Sbjct: 1137 gagtcgtatgaggctgtcgccagccttcatctgttgccgatggtgcggagcatccacggt 1078

                                                                        
Query: 421  ggcagattgctgttgtttgcttgtgctggggacngctgaggttctggatcccctcctcct 480
            ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 1077 ggcagattgctgttgtttgcttgtgctggtgacggctgaggttctggatcccctcctcct 1018

                            
Query: 481  ctagattgatatggcc 496
            ||||||||||||||||
Sbjct: 1017 ctagattgatatggcc 1002



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 44/46 (95%)
 Strand = Plus / Minus

                                                          
Query: 515  cccaatatttngaggtgccatggaatcttgggccgtccgtggtgta 560
            |||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 1003 cccaatatttggaggtgccatggaatcttgggccgtcggtggtgta 958

>gb|AY198328.1| Lolium perenne MADS3 mRNA, complete cds
          Length = 1255

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                                
Query: 221  ggaagaccccattcaccctgtagcaaagacacatggtcttattggtggctac 272
            |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1104 ggaagaccccattcaccctgtaacaaagacacatggtcttattggtggctac 1053



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/91 (83%)
 Strand = Plus / Minus

                                                                       
Query: 387 tcatntgttgccgatggtgcggagcatncacgggggcagattgctgttgtttgcttgtgc 446
           |||| |||| | ||||||||||||||| || || || || |||| | |||||||||||||
Sbjct: 928 tcatctgttactgatggtgcggagcatccatggtggtagcttgccgctgtttgcttgtgc 869

                                          
Query: 447 tggggacngctgaggttctggatcccctcct 477
            |||||| |||||| |||||| ||| |||||
Sbjct: 868 cggggacggctgagattctggctcctctcct 838



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 301  cacaccggcagctagcttccat 322
            ||||||||||||||||||||||
Sbjct: 1021 cacaccggcagctagcttccat 1000

>gb|AC094020.2| Homo sapiens chromosome 3 clone RP11-425J9, complete sequence
          Length = 194729

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 195    ctatagtgcaggaaaagctcaa 216
              ||||||||||||||||||||||
Sbjct: 151256 ctatagtgcaggaaaagctcaa 151235

>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 272    caccggaagccattgccggaga 293
              ||||||||||||||||||||||
Sbjct: 338074 caccggaagccattgccggaga 338053

>gb|AC127430.4| Homo sapiens chromosome 3 clone CTD-2563A18, complete sequence
          Length = 181750

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 195  ctatagtgcaggaaaagctcaa 216
            ||||||||||||||||||||||
Sbjct: 7787 ctatagtgcaggaaaagctcaa 7766

>emb|AL049558.1|SPBC216 S.pombe chromosome II cosmid c216
          Length = 25311

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     tttaataacaatataaagaga 24
             |||||||||||||||||||||
Sbjct: 19181 tttaataacaatataaagaga 19201

>emb|Y19036.1|SPO19036 Schizosaccharomyces pombe swi1 gene for mating-type switching
           protein, strain L972
          Length = 4013

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 4   tttaataacaatataaagaga 24
           |||||||||||||||||||||
Sbjct: 256 tttaataacaatataaagaga 236

>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 95      caaatccattaaagcttaca 114
               ||||||||||||||||||||
Sbjct: 4418397 caaatccattaaagcttaca 4418378

>gb|AY293708.1| Idiosepius pygmaeus cytochrome oxidase subunit I (COI) gene,
           partial cds; mitochondrial
          Length = 617

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 465 tggatcccctcctcctctag 484
           ||||||||||||||||||||
Sbjct: 596 tggatcccctcctcctctag 577

>emb|BX914197.15| Zebrafish DNA sequence from clone DKEYP-81F11 in linkage group 11,
              complete sequence
          Length = 198600

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      ttttaataacaatataaaga 22
              ||||||||||||||||||||
Sbjct: 190788 ttttaataacaatataaaga 190807

>gb|AC125069.4| Mus musculus BAC clone RP23-436E5 from chromosome 2, complete sequence
          Length = 199446

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    acaatataaagagaaggcag 30
             ||||||||||||||||||||
Sbjct: 78616 acaatataaagagaaggcag 78635

>gb|BC036753.1| Homo sapiens aspartate beta-hydroxylase domain containing 2, mRNA
            (cDNA clone MGC:45029 IMAGE:5186506), complete cds
          Length = 1931

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 18   aaagagaaggcagcgccctt 37
            ||||||||||||||||||||
Sbjct: 1341 aaagagaaggcagcgccctt 1322

>emb|Z99714.2|HS1048E9 Human DNA sequence from clone CTB-1048E9 on chromosome 22, complete
             sequence
          Length = 87646

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    aaagagaaggcagcgccctt 37
             ||||||||||||||||||||
Sbjct: 27552 aaagagaaggcagcgccctt 27533

>emb|BX571885.7| Mouse DNA sequence from clone RP23-17O21 on chromosome 4 Contains a
              glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene,
              a novel gene and the 3' end of a novel gene, complete
              sequence
          Length = 218922

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 434    tgtttgcttgtgctggggac 453
              ||||||||||||||||||||
Sbjct: 111472 tgtttgcttgtgctggggac 111491

>dbj|AK097157.1| Homo sapiens cDNA FLJ39838 fis, clone SPLEN2014119, weakly similar
           to Aspartate beta-hydroxylase, isoform a
          Length = 2658

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 18  aaagagaaggcagcgccctt 37
           ||||||||||||||||||||
Sbjct: 708 aaagagaaggcagcgccctt 689

>emb|CR603469.1| full-length cDNA clone CS0DL006YI17 of B cells (Ramos cell line) Cot
            25-normalized of Homo sapiens (human)
          Length = 1933

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 18   aaagagaaggcagcgccctt 37
            ||||||||||||||||||||
Sbjct: 1404 aaagagaaggcagcgccctt 1385

>ref|NM_020437.3| Homo sapiens aspartate beta-hydroxylase domain containing 2 (ASPHD2),
            mRNA
          Length = 1931

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 18   aaagagaaggcagcgccctt 37
            ||||||||||||||||||||
Sbjct: 1341 aaagagaaggcagcgccctt 1322

>dbj|AB193809.1| Sepia pardex mitochondrial COI gene for cytochrome c oxidase
           subunit I, partial cds
          Length = 657

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 465 tggatcccctcctcctctag 484
           ||||||||||||||||||||
Sbjct: 636 tggatcccctcctcctctag 617

>emb|AL359950.4|CNS05TF2 Human chromosome 14 DNA sequence BAC R-566K8 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 194407

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 216  agacaggaagaccccattca 235
            ||||||||||||||||||||
Sbjct: 8763 agacaggaagaccccattca 8782

>emb|CR456391.1| Homo sapiens bK1048E9.3 full length open reading frame (ORF) cDNA
            clone (cDNA clone C22ORF:pGEM.bK1048E9.3.V2)
          Length = 1202

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 18   aaagagaaggcagcgccctt 37
            ||||||||||||||||||||
Sbjct: 1036 aaagagaaggcagcgccctt 1017

>gb|AF131110.1|AF131110 Tetranychus piercei cytochrome oxidase subunit I gene, partial cds;
           mitochondrial gene for mitochondrial product
          Length = 598

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 465 tggatcccctcctcctctag 484
           ||||||||||||||||||||
Sbjct: 433 tggatcccctcctcctctag 414

>emb|AL807377.10| Zebrafish DNA sequence from clone CH211-229G3, complete sequence
          Length = 170231

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 2    cttttaataacaatataaag 21
            ||||||||||||||||||||
Sbjct: 9214 cttttaataacaatataaag 9233

>emb|AL357094.4|CNS05TDT Human chromosome 14 DNA sequence BAC R-14N4 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 158151

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   agacaggaagaccccattca 235
             ||||||||||||||||||||
Sbjct: 17413 agacaggaagaccccattca 17394

>emb|AL928789.4| Mouse DNA sequence from clone RP23-435F21 on chromosome 2, complete
              sequence
          Length = 202887

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     acaatataaagagaaggcag 30
              ||||||||||||||||||||
Sbjct: 200337 acaatataaagagaaggcag 200356

>emb|AL161993.1|HSM802614 Homo sapiens mRNA; cDNA DKFZp761P039 (from clone DKFZp761P039);
           partial cds
          Length = 2416

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 18  aaagagaaggcagcgccctt 37
           ||||||||||||||||||||
Sbjct: 419 aaagagaaggcagcgccctt 400


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,239,885
Number of Sequences: 3902068
Number of extensions: 4239885
Number of successful extensions: 72863
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72803
Number of HSP's gapped (non-prelim): 60
length of query: 560
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 537
effective length of database: 17,143,297,704
effective search space: 9205950867048
effective search space used: 9205950867048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)