Clone Name | rbah61g16 |
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Clone Library Name | barley_pub |
>emb|AJ249143.1|HVU249143 Hordeum vulgare mRNA for MADS-box protein 3 (m3 gene) Length = 1540 Score = 896 bits (452), Expect = 0.0 Identities = 482/496 (97%) Strand = Plus / Minus Query: 1 tcttttaataacaatataaagagaaggcagcgcccttttgcatttttacaacggatggaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1497 tcttttaataacaatataaagagaaggcagcgcccttttgcatttttacaacggatggaa 1438 Query: 61 tacaaaaaccgtgtcaacgtgtaaaaccataccgcaaatccattaaagcttacacacgaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1437 tacaaaaaccgtgtcaacgtgtaaaaccataccgcaaatccattaaagcttacacacgaa 1378 Query: 121 agtccaaccacaagatcgtgctcatcgatcagcgnnnnnnnnggaactgaaacgtggaaa 180 |||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1377 agtccaaccacaagatcgtgctcatcgatcagcgaaaaaaagggaactgaaacgtggaaa 1318 Query: 181 caagacactgctccctatagtgcaggaaaagctcaagacaggaagaccccattcaccctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1317 caagacactgctccctatagtgcaggaaaagctcaagacaggaagaccccattcaccctg 1258 Query: 241 tagcaaagacacatggtcttattggtggctacaccggaagccattgccggagatggactg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1257 tagcaaagacacatggtcttattggtggctacaccggaagccattgccggagatggactg 1198 Query: 301 cacaccggcagctagcttccatagtgggcgcgtgtcaggcgccattgtcgccttcaggtg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1197 cacaccggcagctagcttccatagtgggcgcgtgtcaggcgccattgtcgccttcaggtg 1138 Query: 361 gagtcgtatgangctgtcgccagccttcatntgttgccgatggtgcggagcatncacggg 420 ||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct: 1137 gagtcgtatgaggctgtcgccagccttcatctgttgccgatggtgcggagcatccacggt 1078 Query: 421 ggcagattgctgttgtttgcttgtgctggggacngctgaggttctggatcccctcctcct 480 ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct: 1077 ggcagattgctgttgtttgcttgtgctggtgacggctgaggttctggatcccctcctcct 1018 Query: 481 ctagattgatatggcc 496 |||||||||||||||| Sbjct: 1017 ctagattgatatggcc 1002 Score = 77.8 bits (39), Expect = 3e-11 Identities = 44/46 (95%) Strand = Plus / Minus Query: 515 cccaatatttngaggtgccatggaatcttgggccgtccgtggtgta 560 |||||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 1003 cccaatatttggaggtgccatggaatcttgggccgtcggtggtgta 958
>gb|AY198328.1| Lolium perenne MADS3 mRNA, complete cds Length = 1255 Score = 95.6 bits (48), Expect = 1e-16 Identities = 51/52 (98%) Strand = Plus / Minus Query: 221 ggaagaccccattcaccctgtagcaaagacacatggtcttattggtggctac 272 |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1104 ggaagaccccattcaccctgtaacaaagacacatggtcttattggtggctac 1053 Score = 67.9 bits (34), Expect = 3e-08 Identities = 76/91 (83%) Strand = Plus / Minus Query: 387 tcatntgttgccgatggtgcggagcatncacgggggcagattgctgttgtttgcttgtgc 446 |||| |||| | ||||||||||||||| || || || || |||| | ||||||||||||| Sbjct: 928 tcatctgttactgatggtgcggagcatccatggtggtagcttgccgctgtttgcttgtgc 869 Query: 447 tggggacngctgaggttctggatcccctcct 477 |||||| |||||| |||||| ||| ||||| Sbjct: 868 cggggacggctgagattctggctcctctcct 838 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 301 cacaccggcagctagcttccat 322 |||||||||||||||||||||| Sbjct: 1021 cacaccggcagctagcttccat 1000
>gb|AC094020.2| Homo sapiens chromosome 3 clone RP11-425J9, complete sequence Length = 194729 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 195 ctatagtgcaggaaaagctcaa 216 |||||||||||||||||||||| Sbjct: 151256 ctatagtgcaggaaaagctcaa 151235
>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome Length = 2839318 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 272 caccggaagccattgccggaga 293 |||||||||||||||||||||| Sbjct: 338074 caccggaagccattgccggaga 338053
>gb|AC127430.4| Homo sapiens chromosome 3 clone CTD-2563A18, complete sequence Length = 181750 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 195 ctatagtgcaggaaaagctcaa 216 |||||||||||||||||||||| Sbjct: 7787 ctatagtgcaggaaaagctcaa 7766
>emb|AL049558.1|SPBC216 S.pombe chromosome II cosmid c216 Length = 25311 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 tttaataacaatataaagaga 24 ||||||||||||||||||||| Sbjct: 19181 tttaataacaatataaagaga 19201
>emb|Y19036.1|SPO19036 Schizosaccharomyces pombe swi1 gene for mating-type switching protein, strain L972 Length = 4013 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 tttaataacaatataaagaga 24 ||||||||||||||||||||| Sbjct: 256 tttaataacaatataaagaga 236
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 caaatccattaaagcttaca 114 |||||||||||||||||||| Sbjct: 4418397 caaatccattaaagcttaca 4418378
>gb|AY293708.1| Idiosepius pygmaeus cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 617 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 tggatcccctcctcctctag 484 |||||||||||||||||||| Sbjct: 596 tggatcccctcctcctctag 577
>emb|BX914197.15| Zebrafish DNA sequence from clone DKEYP-81F11 in linkage group 11, complete sequence Length = 198600 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 ttttaataacaatataaaga 22 |||||||||||||||||||| Sbjct: 190788 ttttaataacaatataaaga 190807
>gb|AC125069.4| Mus musculus BAC clone RP23-436E5 from chromosome 2, complete sequence Length = 199446 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 acaatataaagagaaggcag 30 |||||||||||||||||||| Sbjct: 78616 acaatataaagagaaggcag 78635
>gb|BC036753.1| Homo sapiens aspartate beta-hydroxylase domain containing 2, mRNA (cDNA clone MGC:45029 IMAGE:5186506), complete cds Length = 1931 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 aaagagaaggcagcgccctt 37 |||||||||||||||||||| Sbjct: 1341 aaagagaaggcagcgccctt 1322
>emb|Z99714.2|HS1048E9 Human DNA sequence from clone CTB-1048E9 on chromosome 22, complete sequence Length = 87646 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 aaagagaaggcagcgccctt 37 |||||||||||||||||||| Sbjct: 27552 aaagagaaggcagcgccctt 27533
>emb|BX571885.7| Mouse DNA sequence from clone RP23-17O21 on chromosome 4 Contains a glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene, a novel gene and the 3' end of a novel gene, complete sequence Length = 218922 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 tgtttgcttgtgctggggac 453 |||||||||||||||||||| Sbjct: 111472 tgtttgcttgtgctggggac 111491
>dbj|AK097157.1| Homo sapiens cDNA FLJ39838 fis, clone SPLEN2014119, weakly similar to Aspartate beta-hydroxylase, isoform a Length = 2658 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 aaagagaaggcagcgccctt 37 |||||||||||||||||||| Sbjct: 708 aaagagaaggcagcgccctt 689
>emb|CR603469.1| full-length cDNA clone CS0DL006YI17 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1933 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 aaagagaaggcagcgccctt 37 |||||||||||||||||||| Sbjct: 1404 aaagagaaggcagcgccctt 1385
>ref|NM_020437.3| Homo sapiens aspartate beta-hydroxylase domain containing 2 (ASPHD2), mRNA Length = 1931 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 aaagagaaggcagcgccctt 37 |||||||||||||||||||| Sbjct: 1341 aaagagaaggcagcgccctt 1322
>dbj|AB193809.1| Sepia pardex mitochondrial COI gene for cytochrome c oxidase subunit I, partial cds Length = 657 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 tggatcccctcctcctctag 484 |||||||||||||||||||| Sbjct: 636 tggatcccctcctcctctag 617
>emb|AL359950.4|CNS05TF2 Human chromosome 14 DNA sequence BAC R-566K8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 194407 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 agacaggaagaccccattca 235 |||||||||||||||||||| Sbjct: 8763 agacaggaagaccccattca 8782
>emb|CR456391.1| Homo sapiens bK1048E9.3 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.bK1048E9.3.V2) Length = 1202 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 aaagagaaggcagcgccctt 37 |||||||||||||||||||| Sbjct: 1036 aaagagaaggcagcgccctt 1017
>gb|AF131110.1|AF131110 Tetranychus piercei cytochrome oxidase subunit I gene, partial cds; mitochondrial gene for mitochondrial product Length = 598 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 tggatcccctcctcctctag 484 |||||||||||||||||||| Sbjct: 433 tggatcccctcctcctctag 414
>emb|AL807377.10| Zebrafish DNA sequence from clone CH211-229G3, complete sequence Length = 170231 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 cttttaataacaatataaag 21 |||||||||||||||||||| Sbjct: 9214 cttttaataacaatataaag 9233
>emb|AL357094.4|CNS05TDT Human chromosome 14 DNA sequence BAC R-14N4 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 158151 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 agacaggaagaccccattca 235 |||||||||||||||||||| Sbjct: 17413 agacaggaagaccccattca 17394
>emb|AL928789.4| Mouse DNA sequence from clone RP23-435F21 on chromosome 2, complete sequence Length = 202887 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 acaatataaagagaaggcag 30 |||||||||||||||||||| Sbjct: 200337 acaatataaagagaaggcag 200356
>emb|AL161993.1|HSM802614 Homo sapiens mRNA; cDNA DKFZp761P039 (from clone DKFZp761P039); partial cds Length = 2416 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 aaagagaaggcagcgccctt 37 |||||||||||||||||||| Sbjct: 419 aaagagaaggcagcgccctt 400 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,239,885 Number of Sequences: 3902068 Number of extensions: 4239885 Number of successful extensions: 72863 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72803 Number of HSP's gapped (non-prelim): 60 length of query: 560 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 537 effective length of database: 17,143,297,704 effective search space: 9205950867048 effective search space used: 9205950867048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)