ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61g14 |
|---|---|
| Clone Library Name | barley_pub |
>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)| (Fertility restorer) (Restorer for CMS) Length = 791 Score = 75.9 bits (185), Expect = 8e-14 Identities = 43/148 (29%), Positives = 72/148 (48%) Frame = -2 Query: 585 YTALLDIFRRAGNTEKLMETWKSMTDEKVGCTRVTFHMVLDGLAKHGLFVQARDVICEFG 406 Y +L+ E+ E M D + + F+ ++D K G +++ + Sbjct: 444 YNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMV 503 Query: 405 KIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDFS 226 +IG+ P +TYN L+N Y G+ + +LL M ++ LKP++VTYSTLI Y ++ Sbjct: 504 RIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRME 563 Query: 225 RAFYYHKQMVRNGQVPDAKSYRKLLNTL 142 A K+M +G PD +Y +L L Sbjct: 564 DALVLFKEMESSGVSPDIITYNIILQGL 591 Score = 68.6 bits (166), Expect = 1e-11 Identities = 43/154 (27%), Positives = 74/154 (48%) Frame = -2 Query: 588 TYTALLDIFRRAGNTEKLMETWKSMTDEKVGCTRVTFHMVLDGLAKHGLFVQARDVICEF 409 +YT +++ F + G+++K T+ M D + VT++ ++ L K +A +V+ Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM 257 Query: 408 GKIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDF 229 K G+ P MTYN +++ Y GQ + LK+M + ++PD VTYS L+ + Sbjct: 258 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRC 317 Query: 228 SRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 A M + G P+ +Y LL K A Sbjct: 318 MEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 351 Score = 67.8 bits (164), Expect = 2e-11 Identities = 46/155 (29%), Positives = 75/155 (48%) Frame = -2 Query: 588 TYTALLDIFRRAGNTEKLMETWKSMTDEKVGCTRVTFHMVLDGLAKHGLFVQARDVICEF 409 TY ++L + +G ++ + K M + V VT+ +++D L K+G ++AR + Sbjct: 268 TYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSM 327 Query: 408 GKIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDF 229 K GL P TY L+ YA G ++ LL M + PD +S LI AYA+ Sbjct: 328 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKV 387 Query: 228 SRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSAR 124 +A +M + G P+A +Y ++ L KS R Sbjct: 388 DQAMLVFSKMRQQGLNPNAVTYGAVIGIL-CKSGR 421 Score = 62.8 bits (151), Expect = 7e-10 Identities = 37/147 (25%), Positives = 73/147 (49%) Frame = -2 Query: 588 TYTALLDIFRRAGNTEKLMETWKSMTDEKVGCTRVTFHMVLDGLAKHGLFVQARDVICEF 409 TY A++ I ++G E M ++ M DE + + ++ ++ GL + +A ++I E Sbjct: 408 TYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEM 467 Query: 408 GKIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDF 229 G+ + +N +++++ K G+ + +L + M + +KP+ +TY+TLI Y Sbjct: 468 LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKM 527 Query: 228 SRAFYYHKQMVRNGQVPDAKSYRKLLN 148 A MV G P+ +Y L+N Sbjct: 528 DEAMKLLSGMVSVGLKPNTVTYSTLIN 554 Score = 58.2 bits (139), Expect = 2e-08 Identities = 39/149 (26%), Positives = 68/149 (45%) Frame = -2 Query: 588 TYTALLDIFRRAGNTEKLMETWKSMTDEKVGCTRVTFHMVLDGLAKHGLFVQARDVICEF 409 TY+ L+D + G + + + SMT + T+ +L G A G V+ ++ Sbjct: 303 TYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 362 Query: 408 GKIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDF 229 + G+ P ++IL+ AYAK G+ + + +M L P++VTY +I + Sbjct: 363 VRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRV 422 Query: 228 SRAFYYHKQMVRNGQVPDAKSYRKLLNTL 142 A Y +QM+ G P Y L++ L Sbjct: 423 EDAMLYFEQMIDEGLSPGNIVYNSLIHGL 451 Score = 52.8 bits (125), Expect = 7e-07 Identities = 26/84 (30%), Positives = 43/84 (51%) Frame = -2 Query: 399 GLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDFSRA 220 G PP ++Y ++N + K G K EM + PD VTY+++I A + + +A Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKA 250 Query: 219 FYYHKQMVRNGQVPDAKSYRKLLN 148 MV+NG +PD +Y +L+ Sbjct: 251 MEVLNTMVKNGVMPDCMTYNSILH 274 Score = 52.4 bits (124), Expect = 1e-06 Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 3/152 (1%) Frame = -2 Query: 588 TYTALLDIFRRAGNTEKLMETWKSMTDEKVGCTR---VTFHMVLDGLAKHGLFVQARDVI 418 +Y LL +++ +E M D++ G + V++ V++G K G +A Sbjct: 160 SYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTY 219 Query: 417 CEFGKIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARV 238 E G+ P +TYN ++ A K K ++L M + PD +TY+++++ Y Sbjct: 220 HEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSS 279 Query: 237 RDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTL 142 A + K+M +G PD +Y L++ L Sbjct: 280 GQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYL 311 Score = 52.0 bits (123), Expect = 1e-06 Identities = 31/148 (20%), Positives = 70/148 (47%) Frame = -2 Query: 585 YTALLDIFRRAGNTEKLMETWKSMTDEKVGCTRVTFHMVLDGLAKHGLFVQARDVICEFG 406 + +++D + G + + ++ M V +T++ +++G G +A ++ Sbjct: 479 FNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMV 538 Query: 405 KIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDFS 226 +GL P +TY+ L+N Y K + L KEM + + PD +TY+ ++ + R + Sbjct: 539 SVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTA 598 Query: 225 RAFYYHKQMVRNGQVPDAKSYRKLLNTL 142 A + ++ +G + +Y +L+ L Sbjct: 599 AAKELYVRITESGTQIELSTYNIILHGL 626 Score = 35.8 bits (81), Expect = 0.094 Identities = 28/126 (22%), Positives = 54/126 (42%) Frame = -2 Query: 588 TYTALLDIFRRAGNTEKLMETWKSMTDEKVGCTRVTFHMVLDGLAKHGLFVQARDVICEF 409 TY +L + T+ ++ ++++ + TF++++D L K G +A+D+ F Sbjct: 618 TYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAF 677 Query: 408 GKIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDF 229 GL P TY ++ G +L QL M DS + ++ + + Sbjct: 678 SSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEI 737 Query: 228 SRAFYY 211 +RA Y Sbjct: 738 TRAGTY 743 Score = 35.8 bits (81), Expect = 0.094 Identities = 27/160 (16%), Positives = 66/160 (41%) Frame = -2 Query: 588 TYTALLDIFRRAGNTEKLMETWKSMTDEKVGCTRVTFHMVLDGLAKHGLFVQARDVICEF 409 TY L++ + AG ++ M+ M + VT+ +++G K A + E Sbjct: 513 TYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEM 572 Query: 408 GKIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDF 229 G+ P +TYNI++ + + +L ++ + + TY+ +++ + + Sbjct: 573 ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLT 632 Query: 228 SRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSARENIKD 109 A + + +A+++ +++ L + KD Sbjct: 633 DDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKD 672
>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915| Length = 463 Score = 54.7 bits (130), Expect = 2e-07 Identities = 35/120 (29%), Positives = 59/120 (49%) Frame = -2 Query: 483 TFHMVLDGLAKHGLFVQARDVICEFGKIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEM 304 T++++LD L K G A ++ E + P MTYNIL+N K + +L E+ Sbjct: 156 TYNVLLDALCKCGYIDNALELFKEM-QSRFKPELMTYNILINGLCKSRRVGTAKWMLTEL 214 Query: 303 STLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSAR 124 P++VTY+T++ Y + R R +M R G D +Y +++ L +K+ R Sbjct: 215 KKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSAL-IKTGR 273 Score = 45.8 bits (107), Expect = 9e-05 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 1/150 (0%) Frame = -2 Query: 588 TYTALLDIFRRAGNTEKLMETWKSMTDEKVGCTRVTFHMVLDGLAKHGLFVQARDVICEF 409 TY L+ + R E+ + M D + T++ ++ G A+ + + E Sbjct: 50 TYNTLISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHVLYLFDEM 109 Query: 408 GKIGLPPTAMTYNILMNAYAKGGQHYKLPQLL-KEMSTLELKPDSVTYSTLIYAYARVRD 232 + G+ P +YN LM Y K G+H + ++L K++ L P TY+ L+ A + Sbjct: 110 LEWGIYPDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGY 169 Query: 231 FSRAFYYHKQMVRNGQVPDAKSYRKLLNTL 142 A K+M ++ P+ +Y L+N L Sbjct: 170 IDNALELFKEM-QSRFKPELMTYNILINGL 198 Score = 43.5 bits (101), Expect = 5e-04 Identities = 29/123 (23%), Positives = 53/123 (43%) Frame = -2 Query: 588 TYTALLDIFRRAGNTEKLMETWKSMTDEKVGCTRVTFHMVLDGLAKHGLFVQARDVICEF 409 TYT +L ++ + + ++ + M E + V+ L K G +A + + E Sbjct: 225 TYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQEL 284 Query: 408 GKIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDF 229 + G ++YN L+N Y K G + LL E+ +K D T++ ++ R Sbjct: 285 VRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQT 344 Query: 228 SRA 220 RA Sbjct: 345 RRA 347 Score = 37.7 bits (86), Expect = 0.025 Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 1/116 (0%) Frame = -2 Query: 486 VTFHMVLDGLAKHGLFVQARDVICEFGKIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKE 307 VT++ ++ G + +A V G+ P TYN L+ A+ + L E Sbjct: 49 VTYNTLISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHVLYLFDE 108 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAF-YYHKQMVRNGQVPDAKSYRKLLNTL 142 M + PD +Y+TL+ Y ++ AF +K + G P +Y LL+ L Sbjct: 109 MLEWGIYPDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDAL 164 Score = 37.7 bits (86), Expect = 0.025 Identities = 23/74 (31%), Positives = 36/74 (48%) Frame = -2 Query: 372 NILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVR 193 NI +++ K + K L+ + L + PD VTY+TLI Y R A+ ++M Sbjct: 17 NICVDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRD 76 Query: 192 NGQVPDAKSYRKLL 151 G PD +Y L+ Sbjct: 77 AGIRPDVATYNSLI 90
>LPPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)| (Leucine-rich PPR motif-containing protein) Length = 1273 Score = 45.1 bits (105), Expect = 2e-04 Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 1/149 (0%) Frame = -2 Query: 588 TYTALLDIFRRAGNTEKLMETWKSMTDEKVGCTRVTFHMVLDGLAKHGLFVQARDVICEF 409 TY L+ + G+ E + M + + T F ++ G A+ G A +++ Sbjct: 78 TYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVM 137 Query: 408 GKIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDF 229 G+ P TY L+NAYA+ G + Q L+++ EL +I+++++ Sbjct: 138 RDAGIEPGPDTYLALLNAYAEKGDIDHVKQTLEKVEKFELHLMDRDLLQIIFSFSKAGYL 197 Query: 228 SRAFYYHKQMV-RNGQVPDAKSYRKLLNT 145 S + + K+ +PDA + LL T Sbjct: 198 SMSQKFWKKFTCERRYIPDAMNLILLLVT 226 Score = 35.0 bits (79), Expect = 0.16 Identities = 18/62 (29%), Positives = 27/62 (43%) Frame = -2 Query: 405 KIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDFS 226 K+G YN L+ Y + + L +M ++P+ VTY LI +Y V D Sbjct: 34 KLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYCNVGDIE 93 Query: 225 RA 220 A Sbjct: 94 GA 95
>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I| Length = 1261 Score = 38.1 bits (87), Expect = 0.019 Identities = 32/152 (21%), Positives = 67/152 (44%), Gaps = 5/152 (3%) Frame = -2 Query: 588 TYTALLDIFRRAGNTEKLMETWKSMTDEK---VGCTRVTFHMVLDGLAKHGLFVQARDVI 418 T+ L++ R G+T+ + K V + ++ VL L + + + Sbjct: 890 TFAHLINNSTRRGDTDDATTALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLF 949 Query: 417 CEFGKIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTL-ELKPDSVTYSTLI-YAYA 244 E + GL PT++TY ++NA + G +L EM +P Y+T+I + Sbjct: 950 QEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEMENQPNYQPRVAPYNTMIQFEVQ 1009 Query: 243 RVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLN 148 + + +A +Y+ ++ P + +Y+ L++ Sbjct: 1010 TMFNREKALFYYNRLCATDIEPSSHTYKLLMD 1041
>RS4_LEPIN (Q9XD10) 30S ribosomal protein S4| Length = 207 Score = 37.4 bits (85), Expect = 0.032 Identities = 28/81 (34%), Positives = 39/81 (48%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 + LE + D+V Y +A R +R F H+ ++ NG+ D SYR LN D Sbjct: 91 LQLLERRLDNVVYRL---GFAITRRQARNFIAHRHILVNGERVDIPSYR--LNVGDKVEI 145 Query: 126 RENIKDKSAIAGVVKGKSSLK 64 RE K S IA +K SL+ Sbjct: 146 REKFKTSSFIADNIKLSQSLQ 166
>RS4_LEPIC (Q72NI7) 30S ribosomal protein S4| Length = 207 Score = 37.4 bits (85), Expect = 0.032 Identities = 28/81 (34%), Positives = 39/81 (48%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 + LE + D+V Y +A R +R F H+ ++ NG+ D SYR LN D Sbjct: 91 LQLLERRLDNVVYRL---GFAITRRQARNFIAHRHILVNGERVDIPSYR--LNVGDKVEI 145 Query: 126 RENIKDKSAIAGVVKGKSSLK 64 RE K S IA +K SL+ Sbjct: 146 REKFKTSSFIADNIKLSQSLQ 166
>SECA_MYCGE (P47318) Preprotein translocase secA subunit| Length = 806 Score = 34.3 bits (77), Expect = 0.27 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Frame = -2 Query: 480 FHMVLDGLAKHGLFVQARDVICEFGKIGLPPTAMTYNILM-NAYAKGGQHYKLPQLLKEM 304 FH +++GL +F Q ++ I GK+ L T IL +Y+ G L Q ++ Sbjct: 288 FHKIMNGLTAVKVFEQGKEYIVRDGKV-LIVDHFTGRILEGRSYSNG-----LQQAVQAK 341 Query: 303 STLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLN--TLDVKS 130 +E++P++V +T+ Y + F R Y V + +++ + K+ N + V + Sbjct: 342 EYVEIEPENVIVATITY-----QSFFR-LYNRLAAVSGTALTESEEFLKIYNMVVVPVPT 395 Query: 129 ARENI-KDKS 103 R NI KD+S Sbjct: 396 NRPNIRKDRS 405
>RS4_PHOLL (Q7MYH4) 30S ribosomal protein S4| Length = 206 Score = 33.9 bits (76), Expect = 0.36 Identities = 29/86 (33%), Positives = 41/86 (47%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 +S LE + D+V Y + R SR HK ++ NG+V + SY+ N DV S Sbjct: 91 LSLLEGRLDNVVYRM---GFGATRAESRQMVSHKAIMVNGRVVNIASYQVSPN--DVVSV 145 Query: 126 RENIKDKSAIAGVVKGKSSLKHRKEK 49 RE K +S I K L ++EK Sbjct: 146 REKSKKQSRI----KAALELAEQREK 167
>RS4_IDILO (Q5QXV7) 30S ribosomal protein S4| Length = 206 Score = 33.5 bits (75), Expect = 0.47 Identities = 26/86 (30%), Positives = 42/86 (48%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 + LE + D+V Y +A R +R HK +V NGQV + S++ + DV S Sbjct: 91 LQLLEQRLDNVVYRM---GFASTRAEARQLVSHKAVVVNGQVVNIPSFK--VRPEDVVSV 145 Query: 126 RENIKDKSAIAGVVKGKSSLKHRKEK 49 RE K ++ I ++ L ++EK Sbjct: 146 REKAKKQARIGAALE----LAEQREK 167
>PT309_YEAST (P32522) Protein PET309, mitochondrial precursor| Length = 965 Score = 33.5 bits (75), Expect = 0.47 Identities = 20/84 (23%), Positives = 39/84 (46%) Frame = -2 Query: 402 IGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDFSR 223 IG P+ Y ILM A+ G+ + +L ++ + P +L+YA+ +V DF+ Sbjct: 340 IGKLPSIQHYGILMYTMARIGELDSVNKLYTQLLRRGMIPTYAVLQSLLYAHYKVGDFAA 399 Query: 222 AFYYHKQMVRNGQVPDAKSYRKLL 151 F + + + P ++ +L Sbjct: 400 CFSHFELFKKYDITPSTATHTIML 423
>RS4_VIBF1 (Q5E890) 30S ribosomal protein S4| Length = 206 Score = 32.7 bits (73), Expect = 0.80 Identities = 23/75 (30%), Positives = 36/75 (48%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 + LE + D+V Y + R SR HK ++ NG+V + S++ N DV S Sbjct: 91 LQLLEGRLDNVVYRM---GFGATRAESRQLVSHKSILVNGKVVNVPSFKVAAN--DVVSI 145 Query: 126 RENIKDKSAIAGVVK 82 RE K +S I ++ Sbjct: 146 REKAKQQSRIKAALE 160
>RS4_YERPS (Q664U5) 30S ribosomal protein S4| Length = 206 Score = 32.3 bits (72), Expect = 1.0 Identities = 28/86 (32%), Positives = 40/86 (46%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 + LE + D+V Y + R SR HK ++ NG+V + SY+ N DV S Sbjct: 91 LQLLEGRLDNVVYRM---GFGATRAESRQLVSHKAIMVNGRVVNIASYQVSPN--DVVSI 145 Query: 126 RENIKDKSAIAGVVKGKSSLKHRKEK 49 RE K +S VK L ++EK Sbjct: 146 REKAKKQSR----VKAALELAEQREK 167
>RS4_YERPE (Q8ZJ88) 30S ribosomal protein S4| Length = 206 Score = 32.3 bits (72), Expect = 1.0 Identities = 28/86 (32%), Positives = 40/86 (46%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 + LE + D+V Y + R SR HK ++ NG+V + SY+ N DV S Sbjct: 91 LQLLEGRLDNVVYRM---GFGATRAESRQLVSHKAIMVNGRVVNIASYQVSPN--DVVSI 145 Query: 126 RENIKDKSAIAGVVKGKSSLKHRKEK 49 RE K +S VK L ++EK Sbjct: 146 REKAKKQSR----VKAALELAEQREK 167
>SECA_MYCPN (P75559) Preprotein translocase secA subunit| Length = 808 Score = 32.0 bits (71), Expect = 1.4 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 2/129 (1%) Frame = -2 Query: 480 FHMVLDGLAKHGLFVQARDVICEFGKIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMS 301 FH +++ L +F Q ++ I GK+ L T IL G H Q ++ Sbjct: 288 FHKIINALTAVKVFEQGKEYIVRDGKV-LIVDHFTGRILEGRSYSNGLH----QAVQAKE 342 Query: 300 TLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLN--TLDVKSA 127 +E++P++V +T+ Y + F R Y V +++ + K+ N + V + Sbjct: 343 MVEIEPENVIVATITY-----QSFFR-LYNRLSAVSGTAFTESEEFLKIYNMVVVPVPTN 396 Query: 126 RENIKDKSA 100 R NI+ A Sbjct: 397 RPNIRKDRA 405
>TOP1_HELPY (P55991) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 736 Score = 32.0 bits (71), Expect = 1.4 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 13/147 (8%) Frame = -2 Query: 498 GCTRVTFHMVLDGL--AKHGLFVQARDVICEFGKIGLPPTAMTYNILMNAYAKGGQHYKL 325 G V +M D L AK L ++ ++GK LPP A Y+ + + + Sbjct: 290 GVMGVITYMRTDSLNIAKEALEEARNKILKDYGKDYLPPKAKVYSSKNKNAQEAHEAIRP 349 Query: 324 PQLLKEMSTLE--LKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKS----- 166 ++ E + L+ LKP+ + TLIY A + + +V + + K+ Sbjct: 350 TSIILEPNALKDYLKPEELRLYTLIYKRFLASQMQDALFESQSVVVACEKGEFKASGRKL 409 Query: 165 ----YRKLLNTLDVKSARENIKDKSAI 97 Y K+L D N+K+ I Sbjct: 410 LFDGYYKILGNDDKDKLLPNLKENDPI 436
>TOP1_HELPJ (Q9ZMV7) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 736 Score = 32.0 bits (71), Expect = 1.4 Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 5/136 (3%) Frame = -2 Query: 498 GCTRVTFHMVLDGL--AKHGLFVQARDVICEFGKIGLPPTAMTYNILMNAYAKGGQHYKL 325 G V +M D L AK L ++ ++GK LPP A Y+ + + + Sbjct: 290 GVMGVITYMRTDSLNIAKEALEEARAKILKDYGKDYLPPKAKVYSSKNKNAQEAHEAIRP 349 Query: 324 PQLLKEMSTLE--LKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAK-SYRKL 154 ++ E + L+ LKP+ + TLIY A + + +V + + K S RKL Sbjct: 350 TSIILEPNALKDYLKPEELKLYTLIYKRFLASQMQDALFESQSVVVACEKGEFKASGRKL 409 Query: 153 LNTLDVKSARENIKDK 106 L K + KDK Sbjct: 410 LFDGHYKILGNDDKDK 425
>RS4_CHRVO (Q7NQH6) 30S ribosomal protein S4| Length = 206 Score = 32.0 bits (71), Expect = 1.4 Identities = 23/70 (32%), Positives = 34/70 (48%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 + LE + D+V Y + R +R HK +V NGQV + SY+ + DV S Sbjct: 91 LKLLESRLDNVVYRM---GFGSTRAEARQLVSHKAIVVNGQVVNIPSYQ--VKAGDVVSV 145 Query: 126 RENIKDKSAI 97 RE K ++ I Sbjct: 146 REKAKKQARI 155
>PMYT1_CAEEL (O18209) Membrane-associated tyrosine- and threonine-specific| cdc2-inhibitory kinase (EC 2.7.11.1) (Myt1 kinase) (Lethal protein 37) Length = 677 Score = 31.6 bits (70), Expect = 1.8 Identities = 27/100 (27%), Positives = 47/100 (47%) Frame = -2 Query: 474 MVLDGLAKHGLFVQARDVICEFGKIGLPPTAMTYNILMNAYAKGGQHYKLPQLLKEMSTL 295 M+ D + +F+ +D+IC+ G GL N + +A +G Y P++L T Sbjct: 224 MIHDDIKPENIFL-TKDMICKLGDFGLVINLKNPNDVKSA-EEGDSKYLAPEVLNGRPTK 281 Query: 294 ELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPD 175 S+ T++ A + S +H+ +RNGQ+PD Sbjct: 282 SSDIFSLGM-TILEATTDLDVPSNGDSWHQ--IRNGQIPD 318
>ARGB_THETN (Q8R7C0) Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase) (AGK)| (N-acetyl-L-glutamate 5-phosphotransferase) Length = 299 Score = 31.6 bits (70), Expect = 1.8 Identities = 20/63 (31%), Positives = 34/63 (53%) Frame = -2 Query: 189 GQVPDAKSYRKLLNTLDVKSARENIKDKSAIAGVVKGKSSLKHRKEKKDEFGRTVKRGXX 10 G++ +A KL+ DV+ EN++DK+++ + L+H K+ D GR + G Sbjct: 194 GKIAEALKAEKLILLTDVEGVLENVEDKTSLI----SRMDLEHAKKLMDS-GR-INGGMI 247 Query: 9 PKL 1 PKL Sbjct: 248 PKL 250
>RS4_SHISS (Q3YWW3) 30S ribosomal protein S4| Length = 206 Score = 31.6 bits (70), Expect = 1.8 Identities = 27/86 (31%), Positives = 41/86 (47%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 ++ LE + D+V Y + R +R HK ++ NG+V + SY+ N DV S Sbjct: 91 LALLEGRLDNVVYRM---GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN--DVVSI 145 Query: 126 RENIKDKSAIAGVVKGKSSLKHRKEK 49 RE K +S VK L ++EK Sbjct: 146 REKAKKQSR----VKAALELAEQREK 167
>RS4_SHIDS (Q32B55) 30S ribosomal protein S4| Length = 206 Score = 31.6 bits (70), Expect = 1.8 Identities = 27/86 (31%), Positives = 41/86 (47%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 ++ LE + D+V Y + R +R HK ++ NG+V + SY+ N DV S Sbjct: 91 LALLEGRLDNVVYRM---GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN--DVVSI 145 Query: 126 RENIKDKSAIAGVVKGKSSLKHRKEK 49 RE K +S VK L ++EK Sbjct: 146 REKAKKQSR----VKAALELAEQREK 167
>RS4_SHIBS (Q31VY0) 30S ribosomal protein S4| Length = 206 Score = 31.6 bits (70), Expect = 1.8 Identities = 27/86 (31%), Positives = 41/86 (47%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 ++ LE + D+V Y + R +R HK ++ NG+V + SY+ N DV S Sbjct: 91 LALLEGRLDNVVYRM---GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN--DVVSI 145 Query: 126 RENIKDKSAIAGVVKGKSSLKHRKEK 49 RE K +S VK L ++EK Sbjct: 146 REKAKKQSR----VKAALELAEQREK 167
>RS4_SALTI (Q8Z1X4) 30S ribosomal protein S4| Length = 206 Score = 31.6 bits (70), Expect = 1.8 Identities = 27/86 (31%), Positives = 41/86 (47%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 ++ LE + D+V Y + R +R HK ++ NG+V + SY+ N DV S Sbjct: 91 LALLEGRLDNVVYRM---GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN--DVVSI 145 Query: 126 RENIKDKSAIAGVVKGKSSLKHRKEK 49 RE K +S VK L ++EK Sbjct: 146 REKAKKQSR----VKAALELAEQREK 167
>RS4_SALPA (Q5PK09) 30S ribosomal protein S4| Length = 206 Score = 31.6 bits (70), Expect = 1.8 Identities = 27/86 (31%), Positives = 41/86 (47%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 ++ LE + D+V Y + R +R HK ++ NG+V + SY+ N DV S Sbjct: 91 LALLEGRLDNVVYRM---GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN--DVVSI 145 Query: 126 RENIKDKSAIAGVVKGKSSLKHRKEK 49 RE K +S VK L ++EK Sbjct: 146 REKAKKQSR----VKAALELAEQREK 167
>RS4_SALCH (Q57J55) 30S ribosomal protein S4| Length = 206 Score = 31.6 bits (70), Expect = 1.8 Identities = 27/86 (31%), Positives = 41/86 (47%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 ++ LE + D+V Y + R +R HK ++ NG+V + SY+ N DV S Sbjct: 91 LALLEGRLDNVVYRM---GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN--DVVSI 145 Query: 126 RENIKDKSAIAGVVKGKSSLKHRKEK 49 RE K +S VK L ++EK Sbjct: 146 REKAKKQSR----VKAALELAEQREK 167
>RS4_PASMU (Q9CL53) 30S ribosomal protein S4| Length = 206 Score = 31.6 bits (70), Expect = 1.8 Identities = 26/83 (31%), Positives = 41/83 (49%) Frame = -2 Query: 297 LELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSAREN 118 LE + D+V Y +A R +R HK +V NG+V + S++ +N DV + RE Sbjct: 94 LEGRLDNVVYRM---GFAATRAEARQLVSHKAIVVNGRVVNIPSFQVSVN--DVVAVREK 148 Query: 117 IKDKSAIAGVVKGKSSLKHRKEK 49 K ++ I K L ++EK Sbjct: 149 SKKQARI----KASLELAEQREK 167
>RS4_SALTY (O54297) 30S ribosomal protein S4| Length = 205 Score = 31.6 bits (70), Expect = 1.8 Identities = 27/86 (31%), Positives = 41/86 (47%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 ++ LE + D+V Y + R +R HK ++ NG+V + SY+ N DV S Sbjct: 90 LALLEGRLDNVVYRM---GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN--DVVSI 144 Query: 126 RENIKDKSAIAGVVKGKSSLKHRKEK 49 RE K +S VK L ++EK Sbjct: 145 REKAKKQSR----VKAALELAEQREK 166
>RS4_ECOLI (P0A7V8) 30S ribosomal protein S4| Length = 205 Score = 31.6 bits (70), Expect = 1.8 Identities = 27/86 (31%), Positives = 41/86 (47%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 ++ LE + D+V Y + R +R HK ++ NG+V + SY+ N DV S Sbjct: 90 LALLEGRLDNVVYRM---GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN--DVVSI 144 Query: 126 RENIKDKSAIAGVVKGKSSLKHRKEK 49 RE K +S VK L ++EK Sbjct: 145 REKAKKQSR----VKAALELAEQREK 166
>RS4_ECOL6 (P0A7V9) 30S ribosomal protein S4| Length = 205 Score = 31.6 bits (70), Expect = 1.8 Identities = 27/86 (31%), Positives = 41/86 (47%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 ++ LE + D+V Y + R +R HK ++ NG+V + SY+ N DV S Sbjct: 90 LALLEGRLDNVVYRM---GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN--DVVSI 144 Query: 126 RENIKDKSAIAGVVKGKSSLKHRKEK 49 RE K +S VK L ++EK Sbjct: 145 REKAKKQSR----VKAALELAEQREK 166
>RS4_ECO57 (P0A7W0) 30S ribosomal protein S4| Length = 205 Score = 31.6 bits (70), Expect = 1.8 Identities = 27/86 (31%), Positives = 41/86 (47%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 ++ LE + D+V Y + R +R HK ++ NG+V + SY+ N DV S Sbjct: 90 LALLEGRLDNVVYRM---GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN--DVVSI 144 Query: 126 RENIKDKSAIAGVVKGKSSLKHRKEK 49 RE K +S VK L ++EK Sbjct: 145 REKAKKQSR----VKAALELAEQREK 166
>PTCD1_PONPY (Q5R655) Pentatricopeptide repeat protein 1| Length = 698 Score = 31.2 bits (69), Expect = 2.3 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 2/135 (1%) Frame = -2 Query: 588 TYTALLDIFRRAGNTEKLMETWKSMTDEKVGCTRVTFHMVLDGLAKHGLFVQARDVICEF 409 T T L ++ E L+ + + +V F+ ++ +K G A+ ++ Sbjct: 487 TLTLLAEVVESGSPAESLLLAL--LDEHQVEADLTFFNTLVRKKSKLGDLEGAKALLPVL 544 Query: 408 GKIGLPPTAMTY-NILMNAYA-KGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARVR 235 K GL P T+ N+ + + K G QLL +M ++ P+S YS LI A R Sbjct: 545 AKRGLVPNLQTFCNLAIGCHRPKDGL-----QLLTDMKKSQVTPNSHIYSALINAAVRKL 599 Query: 234 DFSRAFYYHKQMVRN 190 +++ K M +N Sbjct: 600 NYTYLINILKDMKQN 614
>SRP72_SCHMA (P49965) Signal recognition particle 72 kDa protein (SRP72)| Length = 707 Score = 31.2 bits (69), Expect = 2.3 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%) Frame = -2 Query: 390 PTAMTYNILMNAYAKGGQHYKLPQLLKEMSTLELKP--DSVTYSTLIYAYARVRDFSRAF 217 PT ++ I AY + Y+L +L + TLE + DS R DF+ A+ Sbjct: 70 PTLSSHVIFEKAYVE----YRLNRLTEAAKTLESEEASDSKVQELKAQVLYRKGDFAGAY 125 Query: 216 YYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 Y + ++RN Q D S +L N V +A Sbjct: 126 AYLRTVIRNSQ--DDYSEERLANLTAVAAA 153
>RS4_HAEI8 (Q4QM98) 30S ribosomal protein S4| Length = 206 Score = 31.2 bits (69), Expect = 2.3 Identities = 26/83 (31%), Positives = 41/83 (49%) Frame = -2 Query: 297 LELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSAREN 118 LE + D+V Y +A R +R HK +V NG+V + S++ +N DV + RE Sbjct: 94 LEGRLDNVVYRM---GFAATRAEARQLVSHKAIVVNGRVVNIPSFQVSVN--DVVAIREK 148 Query: 117 IKDKSAIAGVVKGKSSLKHRKEK 49 K ++ I K L ++EK Sbjct: 149 SKKQARI----KASLELAEQREK 167
>RS4_HAEDU (Q7VKF7) 30S ribosomal protein S4| Length = 208 Score = 31.2 bits (69), Expect = 2.3 Identities = 26/83 (31%), Positives = 41/83 (49%) Frame = -2 Query: 297 LELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSAREN 118 LE + D+V Y +A R +R HK +V NG+V + SY+ ++ DV + RE Sbjct: 96 LEGRLDNVVYRM---GFAATRAEARQLVSHKSIVVNGRVVNIPSYQ--VSVDDVVTVREK 150 Query: 117 IKDKSAIAGVVKGKSSLKHRKEK 49 K ++ I K L ++EK Sbjct: 151 SKKQARI----KASLELASQREK 169
>RS4_HAEIN (P44373) 30S ribosomal protein S4| Length = 205 Score = 31.2 bits (69), Expect = 2.3 Identities = 26/83 (31%), Positives = 41/83 (49%) Frame = -2 Query: 297 LELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSAREN 118 LE + D+V Y +A R +R HK +V NG+V + S++ +N DV + RE Sbjct: 93 LEGRLDNVVYRM---GFATTRAEARQLVSHKAIVVNGRVVNIPSFQVSVN--DVVAIREK 147 Query: 117 IKDKSAIAGVVKGKSSLKHRKEK 49 K ++ I K L ++EK Sbjct: 148 SKKQARI----KASLELAEQREK 166
>CI055_HUMAN (Q5VZ89) Protein C9orf55| Length = 1620 Score = 30.8 bits (68), Expect = 3.0 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = -2 Query: 435 QARDVICEFGKIGLPPT-AMTYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTY 268 QA DV+ + K + P + Y ++M G ++L EM T +KP+++TY Sbjct: 513 QAYDVLIKMRKTDVDPLDEVCYRVVMQLCGLWGHPVLAVRVLFEMKTARIKPNAITY 569
>TOP1_BACAN (P40114) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 870 Score = 30.8 bits (68), Expect = 3.0 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = -2 Query: 240 VRDFSRAFYYHKQMVRN-GQVPDAKSYRKLLNTLDVKSARENIKDK 106 + ++ YYH Q++ + G P K+ ++LN +KS EN+KD+ Sbjct: 199 IENYREQSYYHLQLITDLGLKPVMKTEDQVLNPSPLKSLGENLKDQ 244
>RS4_PSEAE (O52759) 30S ribosomal protein S4| Length = 206 Score = 30.8 bits (68), Expect = 3.0 Identities = 22/71 (30%), Positives = 33/71 (46%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 + LE + D+V Y + R SR HK + NGQ + SY+ + DV + Sbjct: 91 LQLLECRLDNVVYRM---GFGSTRSESRQLVSHKAITVNGQTVNIPSYQ--VKAGDVVAV 145 Query: 126 RENIKDKSAIA 94 RE K++ IA Sbjct: 146 REKSKNQLRIA 156
>TKTN_METJA (Q58094) Putative transketolase N-terminal section (EC 2.2.1.1)| (TK) Length = 274 Score = 30.4 bits (67), Expect = 4.0 Identities = 23/92 (25%), Positives = 42/92 (45%) Frame = -2 Query: 351 AKGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDA 172 A HYKL L+ + +L+ D T + + ++ AF + + D Sbjct: 161 AMAAAHYKLDNLIAFIDRNKLQIDGCTEDVM--SLGDIKAKFEAFGWDVFEI------DG 212 Query: 171 KSYRKLLNTLDVKSARENIKDKSAIAGVVKGK 76 ++ +++NT++ + +N K K IA VKGK Sbjct: 213 HNFEEIINTVEKAKSMKNGKPKMIIAYTVKGK 244
>RS4_SHEVI (Q9S0Q9) 30S ribosomal protein S4| Length = 206 Score = 30.4 bits (67), Expect = 4.0 Identities = 21/71 (29%), Positives = 36/71 (50%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 ++ LE + D+V Y + R SR HK ++ NG V + S++ ++ DV S Sbjct: 91 LTLLETRLDNVVYRM---GFGATRAESRQLVSHKSILVNGSVVNIPSFK--VSASDVISI 145 Query: 126 RENIKDKSAIA 94 RE K ++ I+ Sbjct: 146 REKSKKQARIS 156
>AEP3_CANGA (Q6FKT1) ATPase expression protein 3| Length = 623 Score = 30.4 bits (67), Expect = 4.0 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Frame = -2 Query: 375 YNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYA------RVRDF-SRAF 217 YN ++ Y+K +L +M KP++ TY+ L+ ++R + Sbjct: 221 YNDILYFYSKKYDFATCRELFAQMKVEGCKPNTTTYNILLLNLVKKVHMRKIRSIKNELL 280 Query: 216 YYHKQMVRNGQVPDAKSYRKLLNTLDVKSARENIKDKSAIAGV 88 +Y + M +NG D ++ N L+ + +R+ +K GV Sbjct: 281 FYLRNMQKNGIFCDTVTWNTCYNFLNDEMSRDLYIEKLIDCGV 323
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 30.0 bits (66), Expect = 5.2 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Frame = -2 Query: 207 KQMVRNGQVPDAKSYRKLLNTLDVKSARENIKDKSAIAGVV--KGKSSLKHRKEKKDEFG 34 K V ++PD K RK+L + + ++DK + + K K + RK+KK + Sbjct: 642 KAEVEQVELPDGKKRRKVLALPSHRGPKIRLRDKGKVKSLPSRKPKPQMGQRKQKKQQLA 701 Query: 33 RTVK 22 +V+ Sbjct: 702 SSVQ 705
>RS4_VIBVY (Q7MPG5) 30S ribosomal protein S4| Length = 206 Score = 30.0 bits (66), Expect = 5.2 Identities = 21/75 (28%), Positives = 36/75 (48%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 + LE + D+V Y + R +R HK ++ NG+V + S++ N DV S Sbjct: 91 LQLLEGRLDNVVYRM---GFGATRAEARQLVSHKAILVNGKVVNVPSFKVAAN--DVVSI 145 Query: 126 RENIKDKSAIAGVVK 82 RE K ++ I ++ Sbjct: 146 REKAKQQTRIKAALE 160
>RS4_VIBVU (Q8DE62) 30S ribosomal protein S4| Length = 206 Score = 30.0 bits (66), Expect = 5.2 Identities = 21/75 (28%), Positives = 36/75 (48%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 + LE + D+V Y + R +R HK ++ NG+V + S++ N DV S Sbjct: 91 LQLLEGRLDNVVYRM---GFGATRAEARQLVSHKAILVNGKVVNVPSFKVAAN--DVVSI 145 Query: 126 RENIKDKSAIAGVVK 82 RE K ++ I ++ Sbjct: 146 REKAKQQTRIKAALE 160
>RS4_VIBPA (Q87SZ1) 30S ribosomal protein S4| Length = 206 Score = 30.0 bits (66), Expect = 5.2 Identities = 21/75 (28%), Positives = 36/75 (48%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 + LE + D+V Y + R +R HK ++ NG+V + S++ N DV S Sbjct: 91 LQLLEGRLDNVVYRM---GFGATRAEARQLVSHKAILVNGKVVNVPSFKVAAN--DVVSI 145 Query: 126 RENIKDKSAIAGVVK 82 RE K ++ I ++ Sbjct: 146 REKAKQQARIKAALE 160
>RS4_SHEON (P59131) 30S ribosomal protein S4| Length = 206 Score = 30.0 bits (66), Expect = 5.2 Identities = 21/75 (28%), Positives = 36/75 (48%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 + LE + D+V Y + R SR HK ++ NG+V + S++ N DV S Sbjct: 91 LQLLETRLDNVVYRM---GFGATRAESRQLVSHKSVMVNGRVVNIPSFKVSAN--DVVSI 145 Query: 126 RENIKDKSAIAGVVK 82 RE + ++ I ++ Sbjct: 146 REKSRTQARIKAALE 160
>SYA_HELHP (Q7VHV4) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 892 Score = 30.0 bits (66), Expect = 5.2 Identities = 14/41 (34%), Positives = 25/41 (60%) Frame = -2 Query: 144 LDVKSARENIKDKSAIAGVVKGKSSLKHRKEKKDEFGRTVK 22 L++ ARE++K + + G+ K K L KEK ++ ++VK Sbjct: 740 LELSRARESLKAQDVLQGIEKIKMQLNEAKEKANKAKQSVK 780
>IFIT5_HUMAN (Q13325) Interferon-induced protein with tetratricopeptide repeats| 5 (IFIT-5) (Retinoic acid- and interferon-inducible 58 kDa protein) Length = 482 Score = 30.0 bits (66), Expect = 5.2 Identities = 17/54 (31%), Positives = 26/54 (48%) Frame = -2 Query: 384 AMTYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDFSR 223 A Y L N YA+GGQ+ + ++ LE D + + Y Y R ++F R Sbjct: 338 AFAYTDLANMYAEGGQYSNAEDIFRKALRLENITDDHKHQ-IHYHYGRFQEFHR 390
>Y213_MYCPN (P75556) Hypothetical protein MG075 homolog (G07_orf1030)| Length = 1030 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +2 Query: 35 PNSSFFSFLCFKLDFPFTTPAMALLSFIFSLADFTSKV 148 PN SFF + +F ++ A L FIF +FT V Sbjct: 129 PNQSFFDLSAPRSNFTLSSDKKASLDFIFRFTNFTESV 166
>TEKT3_MOUSE (Q6X6Z7) Tektin-3| Length = 490 Score = 29.6 bits (65), Expect = 6.7 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 2/97 (2%) Frame = -2 Query: 558 RAGNTEKLMETWKSMTDEKV--GCTRVTFHMVLDGLAKHGLFVQARDVICEFGKIGLPPT 385 R T + ETW TD+ V + L ++ L V A ++ +F K+ L Sbjct: 289 RVDATVSVPETWAKFTDDNVLRSQSERAASAKLREETENLLIVTANEMWNQFNKVNL--- 345 Query: 384 AMTYNILMNAYAKGGQHYKLPQLLKEMSTLELKPDSV 274 A T I AK H L + L+E+ +E+ +S+ Sbjct: 346 AFTNRIAETVDAKNKIHTHLTKTLQEIFQIEMTIESI 382
>RS4_MANSM (Q65QX9) 30S ribosomal protein S4| Length = 206 Score = 29.6 bits (65), Expect = 6.7 Identities = 25/83 (30%), Positives = 41/83 (49%) Frame = -2 Query: 297 LELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSAREN 118 LE + D+V Y +A R +R HK +V NG+V + S++ ++ DV + RE Sbjct: 94 LEGRLDNVVYRM---GFAATRAEARQLVSHKAIVVNGRVVNIPSFQ--VSVDDVVAVREK 148 Query: 117 IKDKSAIAGVVKGKSSLKHRKEK 49 K ++ I K L ++EK Sbjct: 149 SKKQARI----KASLELAEQREK 167
>RS4_COXBU (Q83EQ3) 30S ribosomal protein S4| Length = 206 Score = 29.6 bits (65), Expect = 6.7 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 6/104 (5%) Frame = -2 Query: 375 YNILMNAYAKGGQHYKLPQLLKE------MSTLELKPDSVTYSTLIYAYARVRDFSRAFY 214 Y++L +A +YK LK + LE + D+V Y +A R +R Sbjct: 65 YDVLEKQFAN---YYKQADRLKGSTGDNLLKLLESRLDNVVYRM---GFAATRAEARQLI 118 Query: 213 YHKQMVRNGQVPDAKSYRKLLNTLDVKSARENIKDKSAIAGVVK 82 HK ++ NG+V + SY+ + D+ R K + I G ++ Sbjct: 119 SHKAILVNGEVVNIPSYQ--VKPGDIIEVRSRAKGQLRIKGALE 160
>MOAP1_MACFA (Q95KI4) Modulator of apoptosis 1 (MAP-1)| Length = 351 Score = 29.3 bits (64), Expect = 8.8 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -2 Query: 234 DFSRAFYYHKQMVRNGQVPDAKSYRKLLNTL 142 +F R ++ QM++ QVPD + R+LL +L Sbjct: 180 EFGRWMFHTTQMIKAWQVPDVEKRRRLLESL 210
>MOAP1_HUMAN (Q96BY2) Modulator of apoptosis 1 (MAP-1) (MAP1) (Paraneoplastic| antigen MA4) Length = 351 Score = 29.3 bits (64), Expect = 8.8 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -2 Query: 234 DFSRAFYYHKQMVRNGQVPDAKSYRKLLNTL 142 +F R ++ QM++ QVPD + R+LL +L Sbjct: 180 EFGRWMFHTTQMIKAWQVPDVEKRRRLLESL 210
>S6A12_CANFA (P27799) Sodium- and chloride-dependent betaine transporter| (Na+/Cl-betaine/GABA transporter) Length = 614 Score = 29.3 bits (64), Expect = 8.8 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +2 Query: 68 KLDFPFTTPAMALLSFIFSLADFTSKVFNS 157 K+ + F TP + L +F+FSL+ +T +N+ Sbjct: 498 KISWLFLTPGLCLATFLFSLSQYTPLKYNN 527
>RS4_NEIMB (P66561) 30S ribosomal protein S4| Length = 206 Score = 29.3 bits (64), Expect = 8.8 Identities = 22/70 (31%), Positives = 33/70 (47%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 + LE + D+V Y + R +R HK +V NGQV + S++ + DV S Sbjct: 91 LQLLESRLDNVVYRM---GFGSTRAEARQLVSHKAIVVNGQVVNIPSFQ--VKAGDVVSV 145 Query: 126 RENIKDKSAI 97 RE K + I Sbjct: 146 REKAKKQVRI 155
>RS4_NEIMA (P66560) 30S ribosomal protein S4| Length = 206 Score = 29.3 bits (64), Expect = 8.8 Identities = 22/70 (31%), Positives = 33/70 (47%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 + LE + D+V Y + R +R HK +V NGQV + S++ + DV S Sbjct: 91 LQLLESRLDNVVYRM---GFGSTRAEARQLVSHKAIVVNGQVVNIPSFQ--VKAGDVVSV 145 Query: 126 RENIKDKSAI 97 RE K + I Sbjct: 146 REKAKKQVRI 155
>RS4_NEIG1 (Q5F5V1) 30S ribosomal protein S4| Length = 206 Score = 29.3 bits (64), Expect = 8.8 Identities = 22/70 (31%), Positives = 33/70 (47%) Frame = -2 Query: 306 MSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSYRKLLNTLDVKSA 127 + LE + D+V Y + R +R HK +V NGQV + S++ + DV S Sbjct: 91 LQLLESRLDNVVYRM---GFGSTRAEARQLVSHKAIVVNGQVVNIPSFQ--VKAGDVVSV 145 Query: 126 RENIKDKSAI 97 RE K + I Sbjct: 146 REKAKKQVRI 155
>YBBD_BACSU (P40406) Hypothetical lipoprotein ybbD precursor (ORF1)| Length = 642 Score = 29.3 bits (64), Expect = 8.8 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 6/105 (5%) Frame = -2 Query: 342 GQHYKLPQLLKEMSTLELKPDSVTYSTLIYAYARVRDFSRAFYYHKQMVRNGQVPDAKSY 163 GQ + +K + L P SVT + + F+R K+ V+NG +P+ + Sbjct: 330 GQEEAVVMAVKAGVDIALMPASVT------SLKEEQKFARVIQALKEAVKNGDIPEQQIN 383 Query: 162 RKLLNTLDVK------SARENIKDKSAIAGVVKGKSSLKHRKEKK 46 + + +K AR + K IA K S +H K +K Sbjct: 384 NSVERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEK 428 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,615,296 Number of Sequences: 219361 Number of extensions: 1897731 Number of successful extensions: 5858 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 5640 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5848 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
