Clone Name | rbah61g14 |
---|---|
Clone Library Name | barley_pub |
>gb|AC130726.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0508G08, complete sequence Length = 141383 Score = 392 bits (198), Expect = e-106 Identities = 478/570 (83%), Gaps = 1/570 (0%) Strand = Plus / Plus Query: 21 tttttactgttcttccaaat-tcatccttcttttctttcctatgttttaagctagatttt 79 ||||| ||||||||||||| ||||||||||| || ||||||||||||| ||| || ||| Sbjct: 16983 ttttttctgttcttccaaaactcatccttcttctccttcctatgttttaggctggacttt 17042 Query: 80 ccttttacaactcctgcaatggcactcttatcctttatattttcccttgcagatttcaca 139 ||||||| | ||| | |||||| ||||||||||||| || | ||||||| ||||||| Sbjct: 17043 ccttttaagattcccactatggcattcttatcctttatgttctttcttgcagctttcaca 17102 Query: 140 tccaaggtattcaacagctttctgtatgactttgcatcaggcacttgtccattccgaacc 199 ||||| |||||||| | |||| | ||||| | ||||||||| ||||||| | |||||| Sbjct: 17103 tccaatgtattcaataactttttatatgaactaacatcaggcaattgtccacttcgaacc 17162 Query: 200 atctgcttgtggtaatagaatgctctcgagaagtcacggacacgagcatatgcatatatc 259 ||| ||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| ||| Sbjct: 17163 atcagcttgtggtaatagaatgctctcgaaaagtcacgaacacgggcatacgcataaatc 17222 Query: 260 agtgtagaatatgtaactgaatctggttttagttccagagtagacatctctttcaggagt 319 | |||||| ||||| || ||||||||||||| ||||| || || ||||||||||| |||| Sbjct: 17223 attgtagagtatgttacagaatctggttttaattccatagcagccatctctttcaagagt 17282 Query: 320 tggggcaatttgtaatgctgtcctccctttgcataagcattcatcaaaatgttgtaggtc 379 ||||| ||||| ||||| ||||||||| ||||| |||||||||||||||||||||| ||| Sbjct: 17283 tggggtaatttataatgttgtcctccccttgcaaaagcattcatcaaaatgttgtatgtc 17342 Query: 380 atagccgtaggaggtaaacctatttttccaaactcacatattacatctcttgcctgaaca 439 || | ||||| | ||||| ||| ||||||| |||| ||||| ||||||||||| Sbjct: 17343 attacggtaggctgcaaaccagcccttctaaactcatatataacatccgttgcctgaaca 17402 Query: 440 aacaacccatgtttcgccaaaccatcaagtaccatgtgaaatgtgactctagtgcatcca 499 ||| ||||||||| |||| ||||||||| |||||||| ||| | || ||||| | | Sbjct: 17403 tacagcccatgttttgccagaccatcaagcaccatgtggaatattaccctagttccagga 17462 Query: 500 accttttcatcggtcattgatttccatgtctccattaacttctctgtgttaccagccctc 559 |||||||||| | |||||||| ||||||||||||||| |||||| |||| |||||||||| Sbjct: 17463 accttttcattgatcattgatctccatgtctccattagcttctccgtgtcaccagccctc 17522 Query: 560 ctaaatatgtcaagcaaagctgtatatgtt 589 ||||| ||||||| ||| |||||||||||| Sbjct: 17523 ctaaacatgtcaatcaatgctgtatatgtt 17552
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 392 bits (198), Expect = e-106 Identities = 478/570 (83%), Gaps = 1/570 (0%) Strand = Plus / Plus Query: 21 tttttactgttcttccaaat-tcatccttcttttctttcctatgttttaagctagatttt 79 ||||| ||||||||||||| ||||||||||| || ||||||||||||| ||| || ||| Sbjct: 12856437 ttttttctgttcttccaaaactcatccttcttctccttcctatgttttaggctggacttt 12856496 Query: 80 ccttttacaactcctgcaatggcactcttatcctttatattttcccttgcagatttcaca 139 ||||||| | ||| | |||||| ||||||||||||| || | ||||||| ||||||| Sbjct: 12856497 ccttttaagattcccactatggcattcttatcctttatgttctttcttgcagctttcaca 12856556 Query: 140 tccaaggtattcaacagctttctgtatgactttgcatcaggcacttgtccattccgaacc 199 ||||| |||||||| | |||| | ||||| | ||||||||| ||||||| | |||||| Sbjct: 12856557 tccaatgtattcaataactttttatatgaactaacatcaggcaattgtccacttcgaacc 12856616 Query: 200 atctgcttgtggtaatagaatgctctcgagaagtcacggacacgagcatatgcatatatc 259 ||| ||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| ||| Sbjct: 12856617 atcagcttgtggtaatagaatgctctcgaaaagtcacgaacacgggcatacgcataaatc 12856676 Query: 260 agtgtagaatatgtaactgaatctggttttagttccagagtagacatctctttcaggagt 319 | |||||| ||||| || ||||||||||||| ||||| || || ||||||||||| |||| Sbjct: 12856677 attgtagagtatgttacagaatctggttttaattccatagcagccatctctttcaagagt 12856736 Query: 320 tggggcaatttgtaatgctgtcctccctttgcataagcattcatcaaaatgttgtaggtc 379 ||||| ||||| ||||| ||||||||| ||||| |||||||||||||||||||||| ||| Sbjct: 12856737 tggggtaatttataatgttgtcctccccttgcaaaagcattcatcaaaatgttgtatgtc 12856796 Query: 380 atagccgtaggaggtaaacctatttttccaaactcacatattacatctcttgcctgaaca 439 || | ||||| | ||||| ||| ||||||| |||| ||||| ||||||||||| Sbjct: 12856797 attacggtaggctgcaaaccagcccttctaaactcatatataacatccgttgcctgaaca 12856856 Query: 440 aacaacccatgtttcgccaaaccatcaagtaccatgtgaaatgtgactctagtgcatcca 499 ||| ||||||||| |||| ||||||||| |||||||| ||| | || ||||| | | Sbjct: 12856857 tacagcccatgttttgccagaccatcaagcaccatgtggaatattaccctagttccagga 12856916 Query: 500 accttttcatcggtcattgatttccatgtctccattaacttctctgtgttaccagccctc 559 |||||||||| | |||||||| ||||||||||||||| |||||| |||| |||||||||| Sbjct: 12856917 accttttcattgatcattgatctccatgtctccattagcttctccgtgtcaccagccctc 12856976 Query: 560 ctaaatatgtcaagcaaagctgtatatgtt 589 ||||| ||||||| ||| |||||||||||| Sbjct: 12856977 ctaaacatgtcaatcaatgctgtatatgtt 12857006
>dbj|AK104944.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-F08, full insert sequence Length = 889 Score = 392 bits (198), Expect = e-106 Identities = 478/570 (83%), Gaps = 1/570 (0%) Strand = Plus / Minus Query: 21 tttttactgttcttccaaat-tcatccttcttttctttcctatgttttaagctagatttt 79 ||||| ||||||||||||| ||||||||||| || ||||||||||||| ||| || ||| Sbjct: 747 ttttttctgttcttccaaaactcatccttcttctccttcctatgttttaggctggacttt 688 Query: 80 ccttttacaactcctgcaatggcactcttatcctttatattttcccttgcagatttcaca 139 ||||||| | ||| | |||||| ||||||||||||| || | ||||||| ||||||| Sbjct: 687 ccttttaagattcccactatggcattcttatcctttatgttctttcttgcagctttcaca 628 Query: 140 tccaaggtattcaacagctttctgtatgactttgcatcaggcacttgtccattccgaacc 199 ||||| |||||||| | |||| | ||||| | ||||||||| ||||||| | |||||| Sbjct: 627 tccaatgtattcaataactttttatatgaactaacatcaggcaattgtccacttcgaacc 568 Query: 200 atctgcttgtggtaatagaatgctctcgagaagtcacggacacgagcatatgcatatatc 259 ||| ||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| ||| Sbjct: 567 atcagcttgtggtaatagaatgctctcgaaaagtcacgaacacgggcatacgcataaatc 508 Query: 260 agtgtagaatatgtaactgaatctggttttagttccagagtagacatctctttcaggagt 319 | |||||| ||||| || ||||||||||||| ||||| || || ||||||||||| |||| Sbjct: 507 attgtagagtatgttacagaatctggttttaattccatagcagccatctctttcaagagt 448 Query: 320 tggggcaatttgtaatgctgtcctccctttgcataagcattcatcaaaatgttgtaggtc 379 ||||| ||||| ||||| ||||||||| ||||| |||||||||||||||||||||| ||| Sbjct: 447 tggggtaatttataatgttgtcctccccttgcaaaagcattcatcaaaatgttgtatgtc 388 Query: 380 atagccgtaggaggtaaacctatttttccaaactcacatattacatctcttgcctgaaca 439 || | ||||| | ||||| ||| ||||||| |||| ||||| ||||||||||| Sbjct: 387 attacggtaggctgcaaaccagcccttctaaactcatatataacatccgttgcctgaaca 328 Query: 440 aacaacccatgtttcgccaaaccatcaagtaccatgtgaaatgtgactctagtgcatcca 499 ||| ||||||||| |||| ||||||||| |||||||| ||| | || ||||| | | Sbjct: 327 tacagcccatgttttgccagaccatcaagcaccatgtggaatattaccctagttccagga 268 Query: 500 accttttcatcggtcattgatttccatgtctccattaacttctctgtgttaccagccctc 559 |||||||||| | |||||||| ||||||||||||||| |||||| |||| |||||||||| Sbjct: 267 accttttcattgatcattgatctccatgtctccattagcttctccgtgtcaccagccctc 208 Query: 560 ctaaatatgtcaagcaaagctgtatatgtt 589 ||||| ||||||| ||| |||||||||||| Sbjct: 207 ctaaacatgtcaatcaatgctgtatatgtt 178
>dbj|AK068789.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013166J08, full insert sequence Length = 2426 Score = 392 bits (198), Expect = e-106 Identities = 478/570 (83%), Gaps = 1/570 (0%) Strand = Plus / Minus Query: 21 tttttactgttcttccaaat-tcatccttcttttctttcctatgttttaagctagatttt 79 ||||| ||||||||||||| ||||||||||| || ||||||||||||| ||| || ||| Sbjct: 2284 ttttttctgttcttccaaaactcatccttcttctccttcctatgttttaggctggacttt 2225 Query: 80 ccttttacaactcctgcaatggcactcttatcctttatattttcccttgcagatttcaca 139 ||||||| | ||| | |||||| ||||||||||||| || | ||||||| ||||||| Sbjct: 2224 ccttttaagattcccactatggcattcttatcctttatgttctttcttgcagctttcaca 2165 Query: 140 tccaaggtattcaacagctttctgtatgactttgcatcaggcacttgtccattccgaacc 199 ||||| |||||||| | |||| | ||||| | ||||||||| ||||||| | |||||| Sbjct: 2164 tccaatgtattcaataactttttatatgaactaacatcaggcaattgtccacttcgaacc 2105 Query: 200 atctgcttgtggtaatagaatgctctcgagaagtcacggacacgagcatatgcatatatc 259 ||| ||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| ||| Sbjct: 2104 atcagcttgtggtaatagaatgctctcgaaaagtcacgaacacgggcatacgcataaatc 2045 Query: 260 agtgtagaatatgtaactgaatctggttttagttccagagtagacatctctttcaggagt 319 | |||||| ||||| || ||||||||||||| ||||| || || ||||||||||| |||| Sbjct: 2044 attgtagagtatgttacagaatctggttttaattccatagcagccatctctttcaagagt 1985 Query: 320 tggggcaatttgtaatgctgtcctccctttgcataagcattcatcaaaatgttgtaggtc 379 ||||| ||||| ||||| ||||||||| ||||| |||||||||||||||||||||| ||| Sbjct: 1984 tggggtaatttataatgttgtcctccccttgcaaaagcattcatcaaaatgttgtatgtc 1925 Query: 380 atagccgtaggaggtaaacctatttttccaaactcacatattacatctcttgcctgaaca 439 || | ||||| | ||||| ||| ||||||| |||| ||||| ||||||||||| Sbjct: 1924 attacggtaggctgcaaaccagcccttctaaactcatatataacatccgttgcctgaaca 1865 Query: 440 aacaacccatgtttcgccaaaccatcaagtaccatgtgaaatgtgactctagtgcatcca 499 ||| ||||||||| |||| ||||||||| |||||||| ||| | || ||||| | | Sbjct: 1864 tacagcccatgttttgccagaccatcaagcaccatgtggaatattaccctagttccagga 1805 Query: 500 accttttcatcggtcattgatttccatgtctccattaacttctctgtgttaccagccctc 559 |||||||||| | |||||||| ||||||||||||||| |||||| |||| |||||||||| Sbjct: 1804 accttttcattgatcattgatctccatgtctccattagcttctccgtgtcaccagccctc 1745 Query: 560 ctaaatatgtcaagcaaagctgtatatgtt 589 ||||| ||||||| ||| |||||||||||| Sbjct: 1744 ctaaacatgtcaatcaatgctgtatatgtt 1715
>emb|AL133538.16| Human DNA sequence from clone RP11-550N16 on chromosome 6q26-27 Contains a CpG island, complete sequence Length = 109238 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 55 tttcctatgttttaagctagatttt 79 ||||||||||||||||||||||||| Sbjct: 85622 tttcctatgttttaagctagatttt 85598
>emb|AL731897.12| Human DNA sequence from clone RP11-284G10 on chromosome 9 Contains a novel gene, complete sequence Length = 125196 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 37 aaattcatccttcttttctttcc 59 ||||||||||||||||||||||| Sbjct: 58440 aaattcatccttcttttctttcc 58418
>dbj|AP006210.1| Homo sapiens genomic DNA, chromosome 9, clone:RP11-449F3, complete sequence Length = 165755 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 37 aaattcatccttcttttctttcc 59 ||||||||||||||||||||||| Sbjct: 134238 aaattcatccttcttttctttcc 134216
>dbj|AB020873.1| Homo sapiens genomic DNA of 9q32 anti-oncogene of flat epitherium cancer , segment 5/10 Length = 100000 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 37 aaattcatccttcttttctttcc 59 ||||||||||||||||||||||| Sbjct: 82018 aaattcatccttcttttctttcc 81996
>emb|BX927218.17| Zebrafish DNA sequence from clone DKEY-14O18 in linkage group 19, complete sequence Length = 208809 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 257 atcagtgtagaatatgtaactgaatc 282 |||||||| ||||||||||||||||| Sbjct: 53204 atcagtgttgaatatgtaactgaatc 53229 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 257 atcagtgtagaatatgtaactgaatc 282 |||||||| ||||||||||||||||| Sbjct: 48593 atcagtgttgaatatgtaactgaatc 48618
>gb|AC003108.1|HUAC003108 Human Chromosome 16 BAC clone CIT987SK-327O24, complete sequence Length = 164564 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 546 tgttaccagccctcctaaatatgtc 570 ||||||||||||||| ||||||||| Sbjct: 29724 tgttaccagccctccaaaatatgtc 29700
>gb|AC092043.3| Homo sapiens chromosome 3 clone RP11-141M3, complete sequence Length = 176140 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 37 aaattcatccttcttttctttccta 61 ||||||| ||||||||||||||||| Sbjct: 162763 aaattcagccttcttttctttccta 162739
>gb|AC012621.8| Homo sapiens chromosome 16 clone CTD-2055J8, complete sequence Length = 145023 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 546 tgttaccagccctcctaaatatgtc 570 ||||||||||||||| ||||||||| Sbjct: 5378 tgttaccagccctccaaaatatgtc 5354
>gb|AC034256.3|F7H2 Sequence of BAC F7H2 from Arabidopsis thaliana chromosome 1, complete sequence Length = 77521 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 actcttatcctttatattttc 123 ||||||||||||||||||||| Sbjct: 68627 actcttatcctttatattttc 68647
>emb|BX293568.7| Zebrafish DNA sequence from clone CH211-215F13 in linkage group 20, complete sequence Length = 221849 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 355 agcattcatcaaaatgttgta 375 ||||||||||||||||||||| Sbjct: 179079 agcattcatcaaaatgttgta 179059
>gb|AC084380.9| Oryza sativa chromosome 3 BAC OSJNBa0090P23 genomic sequence, complete sequence Length = 126163 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ccttcttttctttcctatgt 64 |||||||||||||||||||| Sbjct: 123116 ccttcttttctttcctatgt 123097
>gb|AC154301.2| Mus musculus BAC clone RP23-392P5 from chromosome 14, complete sequence Length = 207510 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 528 tctccattaacttctctgtgttac 551 ||||| |||||||||||||||||| Sbjct: 158488 tctcctttaacttctctgtgttac 158511
>gb|AY363526.1| Influenza A virus (A/swine/Hong Kong/1197/02(H3N2)) hemagglutinin (HA) gene, partial cds Length = 1632 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 tcctaaatatgtcaagcaaa 577 |||||||||||||||||||| Sbjct: 931 tcctaaatatgtcaagcaaa 950
>gb|AY363524.1| Influenza A virus (A/swine/Hong Kong/9745/01(H3N2)) hemagglutinin (HA) gene, partial cds Length = 1632 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 tcctaaatatgtcaagcaaa 577 |||||||||||||||||||| Sbjct: 931 tcctaaatatgtcaagcaaa 950
>gb|AY363523.1| Influenza A virus (A/swine/Hong Kong/9296/01(H3N2)) hemagglutinin (HA) gene, partial cds Length = 1626 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 tcctaaatatgtcaagcaaa 577 |||||||||||||||||||| Sbjct: 925 tcctaaatatgtcaagcaaa 944
>gb|AY363522.1| Influenza A virus (A/swine/Hong Kong/7982/00(H3N2)) hemagglutinin (HA) gene, partial cds Length = 1656 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 tcctaaatatgtcaagcaaa 577 |||||||||||||||||||| Sbjct: 955 tcctaaatatgtcaagcaaa 974
>gb|AY363521.1| Influenza A virus (A/swine/Hong Kong/5212/99(H3N2)) hemagglutinin (HA) gene, partial cds Length = 1621 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 tcctaaatatgtcaagcaaa 577 |||||||||||||||||||| Sbjct: 920 tcctaaatatgtcaagcaaa 939
>gb|AY363520.1| Influenza A virus (A/swine/Hong Kong/5200/99(H3N2)) hemagglutinin (HA) gene, partial cds Length = 1662 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 tcctaaatatgtcaagcaaa 577 |||||||||||||||||||| Sbjct: 961 tcctaaatatgtcaagcaaa 980
>gb|AY363519.1| Influenza A virus (A/swine/Hong Kong/5190/99(H3N2)) hemagglutinin (HA) gene, partial cds Length = 1595 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 tcctaaatatgtcaagcaaa 577 |||||||||||||||||||| Sbjct: 895 tcctaaatatgtcaagcaaa 914
>ref|XM_451871.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B07667g predicted mRNA Length = 6000 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 caagcaaagctgtatatgtt 589 |||||||||||||||||||| Sbjct: 5259 caagcaaagctgtatatgtt 5278
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ccttcttttctttcctatgt 64 |||||||||||||||||||| Sbjct: 16197937 ccttcttttctttcctatgt 16197918
>gb|AC125152.5| Mus musculus BAC clone RP24-366J2 from chromosome 14, complete sequence Length = 134122 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 40 ttcatccttcttttctttcctatgtttt 67 ||||||||||||||||||| | |||||| Sbjct: 68286 ttcatccttcttttctttcttttgtttt 68313
>gb|AC140053.4| Mus musculus BAC clone RP23-258J2 from chromosome 19, complete sequence Length = 186595 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 attcatccttcttttctttc 58 |||||||||||||||||||| Sbjct: 20114 attcatccttcttttctttc 20095
>emb|AL450427.11| Human DNA sequence from clone RP11-372H19 on chromosome 6, complete sequence Length = 68843 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 taagcattcatcaaaatgtt 372 |||||||||||||||||||| Sbjct: 50135 taagcattcatcaaaatgtt 50154
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 ccaaggtattcaacagcttt 160 |||||||||||||||||||| Sbjct: 1793727 ccaaggtattcaacagcttt 1793746
>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1320834 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 caagcaaagctgtatatgtt 589 |||||||||||||||||||| Sbjct: 673121 caagcaaagctgtatatgtt 673140
>emb|AJ293926.1|IVI293926 Influenza A virus (A/Hong Kong/1774/99(H3N2)) partial ha gene for haemagglutinin, genomic RNA Length = 1699 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 tcctaaatatgtcaagcaaa 577 |||||||||||||||||||| Sbjct: 967 tcctaaatatgtcaagcaaa 986
>gb|AC087500.16| Homo sapiens chromosome 17, clone RP11-333E1, complete sequence Length = 170770 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 cactcttatcctttatattt 121 |||||||||||||||||||| Sbjct: 157345 cactcttatcctttatattt 157326
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete sequence Length = 1632307 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 catatgcatatatcagtgta 265 |||||||||||||||||||| Sbjct: 663119 catatgcatatatcagtgta 663138
>gb|AC153763.3| Loxodonta africana clone VMRC15-160B20, complete sequence Length = 130183 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 tccttcttttctttcctatgtttt 67 ||||||||||||||||| |||||| Sbjct: 77897 tccttcttttctttcctttgtttt 77920
>gb|AC107061.6| Homo sapiens BAC clone RP11-749L19 from 4, complete sequence Length = 110541 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 ccaaattcatccttcttttctttc 58 |||||||||| ||||||||||||| Sbjct: 96709 ccaaattcattcttcttttctttc 96732
>dbj|AB158487.1| Sus scrofa PPP1R11, ZNRD1, RNF39, TRIM10, TRIM31, MOG, TRIM15, KRAB, TRIM40 genes, complete cds Length = 143480 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 tctttttactgttcttccaa 38 |||||||||||||||||||| Sbjct: 26667 tctttttactgttcttccaa 26686
>dbj|AB158486.1| Sus scrofa PPP1R11, ZNRD1, RNF39, GABBR1, MOG, UBD, OLF42-3, OLF42-2, OLF42-1, KRAB genes, complete cds Length = 156044 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 tctttttactgttcttccaa 38 |||||||||||||||||||| Sbjct: 120819 tctttttactgttcttccaa 120838
>gb|AC114284.2| Homo sapiens chromosome 5 clone CTD-2334D19, complete sequence Length = 126480 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 ttcctatgttttaagctagatttt 79 ||||||||||||||| |||||||| Sbjct: 24031 ttcctatgttttaagttagatttt 24008
>gb|AC093253.2| Homo sapiens chromosome 5 clone RP11-172J18, complete sequence Length = 82161 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 ttcctatgttttaagctagatttt 79 ||||||||||||||| |||||||| Sbjct: 63889 ttcctatgttttaagttagatttt 63866
>gb|AC027304.4| Homo sapiens chromosome 5 clone CTB-118N6, complete sequence Length = 111096 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 tcttttctttcctatgtttt 67 |||||||||||||||||||| Sbjct: 5321 tcttttctttcctatgtttt 5340
>gb|AC012146.25| Homo sapiens chromosome 17, clone RP11-46I8, complete sequence Length = 171309 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 cactcttatcctttatattt 121 |||||||||||||||||||| Sbjct: 15772 cactcttatcctttatattt 15753
>gb|AC016987.4|AC016987 Homo sapiens chromosome 15, clone RP11-133L19, complete sequence Length = 176639 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 ttatcctttatattttccct 126 |||||||||||||||||||| Sbjct: 165709 ttatcctttatattttccct 165690
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ccttcttttctttcctatgt 64 |||||||||||||||||||| Sbjct: 16192470 ccttcttttctttcctatgt 16192451
>gb|AC154340.3| Mus musculus BAC clone RP23-238B22 from chromosome 14, complete sequence Length = 210115 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 528 tctccattaacttctctgtgttac 551 ||||| |||||||||||||||||| Sbjct: 205014 tctcctttaacttctctgtgttac 204991
>gb|AC157519.2| Mus musculus BAC clone RP23-202O17 from chromosome 19, complete sequence Length = 215073 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 attcatccttcttttctttc 58 |||||||||||||||||||| Sbjct: 84350 attcatccttcttttctttc 84331
>gb|AC008651.7|AC008651 Homo sapiens chromosome 5 clone CTB-187A7, complete sequence Length = 147098 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tcttttctttcctatgtttt 67 |||||||||||||||||||| Sbjct: 30891 tcttttctttcctatgtttt 30872
>gb|AC112235.4| Homo sapiens BAC clone RP11-285D1 from 2, complete sequence Length = 30304 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 tccagagtagacatctcttt 312 |||||||||||||||||||| Sbjct: 2216 tccagagtagacatctcttt 2197
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 ttatcctttatattttccct 126 |||||||||||||||||||| Sbjct: 199943 ttatcctttatattttccct 199962
>gb|AC126767.2| Homo sapiens chromosome 5 clone RP11-249M12, complete sequence Length = 172289 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tcttttctttcctatgtttt 67 |||||||||||||||||||| Sbjct: 250 tcttttctttcctatgtttt 231
>dbj|AK103200.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122A14, full insert sequence Length = 995 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ccttcttttctttcctatgt 64 |||||||||||||||||||| Sbjct: 730 ccttcttttctttcctatgt 749
>gb|AC155905.1| Mus musculus BAC clone RP24-457D12 from 12, complete sequence Length = 173900 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aaattcatccttcttttctt 56 |||||||||||||||||||| Sbjct: 40085 aaattcatccttcttttctt 40104
>emb|BX255914.3| Zebrafish DNA sequence from clone CH211-212G7 in linkage group 20, complete sequence Length = 217957 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 aaacctatttttccaaactc 414 |||||||||||||||||||| Sbjct: 174385 aaacctatttttccaaactc 174366
>tpe|BN000002.1|HSA000002 TPA: TPA_exp: Homo sapiens complete interleukin-1 gene cluster (Draft Contig) including IL1A (IL1F1), IL1B (IL1F2), IL1RN (IL1F3), IL1F5, IL1F6, IL1F7, IL1F8, IL1F9, IL1F10 Length = 495475 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 tccagagtagacatctcttt 312 |||||||||||||||||||| Sbjct: 50225 tccagagtagacatctcttt 50206
>gb|AC124354.4| Mus musculus BAC clone RP24-481K12 from 12, complete sequence Length = 180819 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aaattcatccttcttttctt 56 |||||||||||||||||||| Sbjct: 29593 aaattcatccttcttttctt 29574
>emb|AL670464.12| Mouse DNA sequence from clone RP23-12I24 on chromosome 4, complete sequence Length = 203558 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 ttttctttcctatgttttaa 69 |||||||||||||||||||| Sbjct: 118847 ttttctttcctatgttttaa 118828 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,763,199 Number of Sequences: 3902068 Number of extensions: 6763199 Number of successful extensions: 146619 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 146331 Number of HSP's gapped (non-prelim): 272 length of query: 589 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 566 effective length of database: 17,143,297,704 effective search space: 9703106500464 effective search space used: 9703106500464 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)