ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61g13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LEUNG_ARATH (Q9FUY2) Transcriptional corepressor LEUNIG 43 5e-04
2SPEG_HUMAN (Q15772) Striated muscle preferentially expressed pro... 30 3.6
3GBLP_RAT (P63245) Guanine nucleotide-binding protein beta subuni... 30 3.6
4GBLP_PIG (P63246) Guanine nucleotide-binding protein beta subuni... 30 3.6
5GBLP_MOUSE (P68040) Guanine nucleotide-binding protein beta subu... 30 3.6
6GBLP_MACFA (Q4R7Y4) Guanine nucleotide-binding protein beta subu... 30 3.6
7GBLP_HUMAN (P63244) Guanine nucleotide-binding protein beta subu... 30 3.6
8GBLP_BOVIN (P63243) Guanine nucleotide-binding protein beta subu... 30 3.6
9GBLP_CHICK (P63247) Guanine nucleotide-binding protein beta subu... 30 3.6
10SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine pr... 30 6.2
11VL1_HPVME (P27964) Major capsid protein L1 30 6.2
12Y130_MYCGE (P47376) UPF0144 protein MG130 29 8.1
13VL1_HPV68 (P54669) Major capsid protein L1 29 8.1

>LEUNG_ARATH (Q9FUY2) Transcriptional corepressor LEUNIG|
          Length = 931

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 20/26 (76%), Positives = 22/26 (84%)
 Frame = -2

Query: 566 IAALAASNASGLVASVSHDKLVKLWK 489
           I +LA S A+GLVAS SHDKLVKLWK
Sbjct: 906 ITSLAVSTATGLVASASHDKLVKLWK 931



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>SPEG_HUMAN (Q15772) Striated muscle preferentially expressed protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3223

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = -2

Query: 302  CHPSCCRCPWIGL-----TILVECTILVVACANSRVLLSL--TGHKHRSLYVFSDCIFLN 144
            C P+ C  P I       ++  E ++++V+C + R LLS+   G +H  LY  S    L 
Sbjct: 2605 CLPAACPAPHISWMKDKKSLRSEPSVIIVSCKDGRQLLSIPRAGKRHAGLYECSATNVLG 2664

Query: 143  CVCS 132
             + S
Sbjct: 2665 SITS 2668



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>GBLP_RAT (P63245) Guanine nucleotide-binding protein beta subunit 2-like 1|
           (Receptor of activated protein kinase C 1) (RACK1)
           (Receptor for activated C kinase)
          Length = 316

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 566 IAALAASNASGLVASVSHDKLVKLWK*YQVATFLLRQTSWSLRTSVVQFQP 414
           + ++A S+ +  + S S DK +KLW    V  + ++  S S   S V+F P
Sbjct: 107 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 157



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>GBLP_PIG (P63246) Guanine nucleotide-binding protein beta subunit 2-like 1|
           (Receptor of activated protein kinase C 1) (RACK1)
           (Receptor for activated C kinase)
          Length = 316

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 566 IAALAASNASGLVASVSHDKLVKLWK*YQVATFLLRQTSWSLRTSVVQFQP 414
           + ++A S+ +  + S S DK +KLW    V  + ++  S S   S V+F P
Sbjct: 107 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 157



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>GBLP_MOUSE (P68040) Guanine nucleotide-binding protein beta subunit 2-like 1|
           (Receptor of activated protein kinase C 1) (RACK1)
           (Receptor for activated C kinase) (p205) (12-3)
          Length = 316

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 566 IAALAASNASGLVASVSHDKLVKLWK*YQVATFLLRQTSWSLRTSVVQFQP 414
           + ++A S+ +  + S S DK +KLW    V  + ++  S S   S V+F P
Sbjct: 107 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 157



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>GBLP_MACFA (Q4R7Y4) Guanine nucleotide-binding protein beta subunit 2-like 1|
          Length = 316

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 566 IAALAASNASGLVASVSHDKLVKLWK*YQVATFLLRQTSWSLRTSVVQFQP 414
           + ++A S+ +  + S S DK +KLW    V  + ++  S S   S V+F P
Sbjct: 107 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 157



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>GBLP_HUMAN (P63244) Guanine nucleotide-binding protein beta subunit 2-like 1|
           (Guanine nucleotide-binding protein beta subunit-like
           protein 12.3) (Receptor of activated protein kinase C 1)
           (RACK1) (Receptor for activated C kinase)
          Length = 316

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 566 IAALAASNASGLVASVSHDKLVKLWK*YQVATFLLRQTSWSLRTSVVQFQP 414
           + ++A S+ +  + S S DK +KLW    V  + ++  S S   S V+F P
Sbjct: 107 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 157



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>GBLP_BOVIN (P63243) Guanine nucleotide-binding protein beta subunit 2-like 1|
           (Receptor of activated protein kinase C 1) (RACK1)
           (Receptor for activated C kinase)
          Length = 316

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 566 IAALAASNASGLVASVSHDKLVKLWK*YQVATFLLRQTSWSLRTSVVQFQP 414
           + ++A S+ +  + S S DK +KLW    V  + ++  S S   S V+F P
Sbjct: 107 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 157



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>GBLP_CHICK (P63247) Guanine nucleotide-binding protein beta subunit 2-like 1|
           (Guanine nucleotide-binding protein beta subunit-like
           protein 12.3) (Receptor of activated protein kinase C 1)
           (RACK1) (Receptor for activated C kinase)
          Length = 317

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 566 IAALAASNASGLVASVSHDKLVKLWK*YQVATFLLRQTSWSLRTSVVQFQP 414
           + ++A S+ +  + S S DK +KLW    V  + ++  S S   S V+F P
Sbjct: 108 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 158



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>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3262

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = -2

Query: 302  CHPSCCRCPWIGL-----TILVECTILVVACANSRVLLSL--TGHKHRSLYVFSDCIFLN 144
            C P+ C  P I       ++  E ++++V+C + R LLS+   G +H  LY  S    L 
Sbjct: 2608 CLPAACPAPRISWMKDKQSLRSEPSVVIVSCKDGRQLLSIPRAGKRHAGLYECSATNVLG 2667

Query: 143  CVCS 132
             + S
Sbjct: 2668 SITS 2671



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>VL1_HPVME (P27964) Major capsid protein L1|
          Length = 505

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -3

Query: 493 GSDIR*QPSFYVKQVGPCGHLSSSSSQRF 407
           G+DIR  PS YV    P G + SS SQ F
Sbjct: 279 GTDIRDSPSSYVYAPSPSGSMVSSDSQLF 307



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>Y130_MYCGE (P47376) UPF0144 protein MG130|
          Length = 484

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -3

Query: 193 VTSTEAFMYFLTAFFSIAFALISPFSLCAPKFSKSDVSACCLKAYV*FRYSI 38
           +T++ A ++F T+FF+  F +I  F+L             CL AY+ F+Y I
Sbjct: 5   ITNSIAQLFFNTSFFAFLFLIIIAFNL-------------CLFAYLYFQYRI 43



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>VL1_HPV68 (P54669) Major capsid protein L1|
          Length = 505

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -3

Query: 493 GSDIR*QPSFYVKQVGPCGHLSSSSSQRF 407
           G+DIR  PS YV    P G + SS SQ F
Sbjct: 279 GTDIRETPSSYVYAPSPSGSMVSSDSQLF 307


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,898,439
Number of Sequences: 219361
Number of extensions: 1555620
Number of successful extensions: 3549
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3544
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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