Clone Name | rbah61g13 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 91.7 bits (46), Expect = 2e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 468 gaaggttgctacctgatatcacttccagagcttgacaagcttatcatgacttactgaggc 527 ||||||||| || | || ||| |||||||||||||||||| ||||||| || |||||||| Sbjct: 23948977 gaaggttgcaacttaatgtcatttccagagcttgacaagcctatcatggctcactgaggc 23949036 Query: 528 gaccaaccctgatgcatttgatgcagctag 557 | ||||||||||||||||||||| ||||| Sbjct: 23949037 aatcaaccctgatgcatttgatgctgctag 23949066 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 490 ttccagagcttgacaagcttatcatgacttactgaggc 527 |||||||||||||||| | ||||||| ||||||||||| Sbjct: 23934751 ttccagagcttgacaaacctatcatggcttactgaggc 23934788 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 cacacaaagagaaaggggaa 128 |||||||||||||||||||| Sbjct: 41470987 cacacaaagagaaaggggaa 41471006 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 cacacaaagagaaaggggaa 128 |||||||||||||||||||| Sbjct: 41440014 cacacaaagagaaaggggaa 41440033
>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0704D04 Length = 147638 Score = 91.7 bits (46), Expect = 2e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 468 gaaggttgctacctgatatcacttccagagcttgacaagcttatcatgacttactgaggc 527 ||||||||| || | || ||| |||||||||||||||||| ||||||| || |||||||| Sbjct: 95381 gaaggttgcaacttaatgtcatttccagagcttgacaagcctatcatggctcactgaggc 95440 Query: 528 gaccaaccctgatgcatttgatgcagctag 557 | ||||||||||||||||||||| ||||| Sbjct: 95441 aatcaaccctgatgcatttgatgctgctag 95470 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 490 ttccagagcttgacaagcttatcatgacttactgaggc 527 |||||||||||||||| | ||||||| ||||||||||| Sbjct: 81155 ttccagagcttgacaaacctatcatggcttactgaggc 81192
>dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0090K04 Length = 152556 Score = 91.7 bits (46), Expect = 2e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 468 gaaggttgctacctgatatcacttccagagcttgacaagcttatcatgacttactgaggc 527 ||||||||| || | || ||| |||||||||||||||||| ||||||| || |||||||| Sbjct: 63499 gaaggttgcaacttaatgtcatttccagagcttgacaagcctatcatggctcactgaggc 63558 Query: 528 gaccaaccctgatgcatttgatgcagctag 557 | ||||||||||||||||||||| ||||| Sbjct: 63559 aatcaaccctgatgcatttgatgctgctag 63588 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 490 ttccagagcttgacaagcttatcatgacttactgaggc 527 |||||||||||||||| | ||||||| ||||||||||| Sbjct: 49273 ttccagagcttgacaaacctatcatggcttactgaggc 49310
>dbj|AK105049.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F06, full insert sequence Length = 1916 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 490 ttccagagcttgacaagcttatcatgacttactgaggc 527 |||||||||||||||| | ||||||| ||||||||||| Sbjct: 1671 ttccagagcttgacaaacctatcatggcttactgaggc 1634
>dbj|AK101152.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027C19, full insert sequence Length = 3156 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 490 ttccagagcttgacaagcttatcatgacttactgaggc 527 |||||||||||||||| | ||||||| ||||||||||| Sbjct: 2914 ttccagagcttgacaaacctatcatggcttactgaggc 2877
>ref|NM_192708.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1953 Score = 48.1 bits (24), Expect = 0.032 Identities = 33/36 (91%) Strand = Plus / Minus Query: 522 tgaggcgaccaaccctgatgcatttgatgcagctag 557 |||||| | ||||||||||||||||||||| ||||| Sbjct: 1914 tgaggcaatcaaccctgatgcatttgatgctgctag 1879
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 484 tatcacttccagagcttgaca 504 ||||||||||||||||||||| Sbjct: 30010374 tatcacttccagagcttgaca 30010394 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 aaaatacataaaggcttctg 183 |||||||||||||||||||| Sbjct: 17404059 aaaatacataaaggcttctg 17404040
>gb|AY509906.1| Homo sapiens interleukin 26 (IL26) gene, complete cds Length = 33991 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 151 aaaatgcagtcagaaaataca 171 ||||||||||||||||||||| Sbjct: 15518 aaaatgcagtcagaaaataca 15498
>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete sequence Length = 159661 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 484 tatcacttccagagcttgaca 504 ||||||||||||||||||||| Sbjct: 232 tatcacttccagagcttgaca 212
>gb|AC144617.10| Medicago truncatula clone mth2-7m9, complete sequence Length = 122853 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 486 tcacttccagagcttgacaagcttatcatgact 518 |||||||||||||||||||| | | |||||||| Sbjct: 117244 tcacttccagagcttgacaaacctgtcatgact 117212
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 484 tatcacttccagagcttgaca 504 ||||||||||||||||||||| Sbjct: 97377 tatcacttccagagcttgaca 97357
>gb|AC146722.16| Medicago truncatula clone mth2-23c16, complete sequence Length = 121968 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 486 tcacttccagagcttgacaagcttatcatgact 518 |||||||||||||||||||| | | |||||||| Sbjct: 3272 tcacttccagagcttgacaaacctgtcatgact 3240
>gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome Length = 1176248 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 gtttatctgcagcagaaaaac 388 ||||||||||||||||||||| Sbjct: 344082 gtttatctgcagcagaaaaac 344062
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 484 tatcacttccagagcttgaca 504 ||||||||||||||||||||| Sbjct: 30101796 tatcacttccagagcttgaca 30101816 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 aaaatacataaaggcttctg 183 |||||||||||||||||||| Sbjct: 17397600 aaaatacataaaggcttctg 17397581
>gb|AC007458.14| Homo sapiens 12 BAC RP11-444B24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 190961 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 151 aaaatgcagtcagaaaataca 171 ||||||||||||||||||||| Sbjct: 157049 aaaatgcagtcagaaaataca 157069
>emb|AL132987.4|CNS01DTV Human chromosome 14 DNA sequence BAC R-188I13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 169505 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 26 gaagagcatatcaatggagtacctgaactacac 58 ||||||| ||||||||||||| |||| |||||| Sbjct: 144709 gaagagcctatcaatggagtatctgagctacac 144677
>emb|AL136332.5|CNS01DW4 Human chromosome 14 DNA sequence BAC R-807G16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 209157 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 26 gaagagcatatcaatggagtacctgaactacac 58 ||||||| ||||||||||||| |||| |||||| Sbjct: 11677 gaagagcctatcaatggagtatctgagctacac 11645
>gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0032H19 map E30331S, complete sequence Length = 164820 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aaaatacataaaggcttctg 183 |||||||||||||||||||| Sbjct: 159684 aaaatacataaaggcttctg 159703
>gb|AC135598.4| Oryza sativa chromosome 3 BAC OSJNBb0021K20 genomic sequence, complete sequence Length = 137220 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 aaaatacataaaggcttctg 183 |||||||||||||||||||| Sbjct: 126436 aaaatacataaaggcttctg 126417
>ref|XM_416196.1| PREDICTED: Gallus gallus similar to H2B histone family, member F (LOC417956), mRNA Length = 841 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 aaaggggaaataagagcaaa 139 |||||||||||||||||||| Sbjct: 815 aaaggggaaataagagcaaa 834
>emb|CR626875.10| Zebrafish DNA sequence from clone DKEY-31J4 in linkage group 15, complete sequence Length = 212742 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 agagcaaacgcaattgagaaaaat 155 ||||||||| |||||||||||||| Sbjct: 81851 agagcaaacacaattgagaaaaat 81828
>gb|AC124755.4| Mus musculus BAC clone RP23-285L4 from chromosome 12, complete sequence Length = 190631 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 aagagaaaggggaaataaga 134 |||||||||||||||||||| Sbjct: 55148 aagagaaaggggaaataaga 55129
>emb|Z73970.1|CEC29A12 Caenorhabditis elegans Cosmid C29A12, complete sequence Length = 41406 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 tgtgaccagtcaatgataac 207 |||||||||||||||||||| Sbjct: 101 tgtgaccagtcaatgataac 120
>gb|AC117223.3| Mus musculus BAC clone RP23-348B1 from chromosome 2, complete sequence Length = 183972 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 acacaaagagaaaggggaaa 129 |||||||||||||||||||| Sbjct: 27228 acacaaagagaaaggggaaa 27209
>emb|BX470150.13| Zebrafish DNA sequence from clone DKEY-164K14 in linkage group 23, complete sequence Length = 209342 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 aatgcagtcagaaaatacat 172 |||||||||||||||||||| Sbjct: 26987 aatgcagtcagaaaatacat 26968
>gb|AC153815.7| Mus musculus 6 BAC RP23-205F19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 230983 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 taacaaacatacgaaggaag 29 |||||||||||||||||||| Sbjct: 6964 taacaaacatacgaaggaag 6983
>emb|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segment 2/6 Length = 293250 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 gcttgtgaccagtcaatgataaca 208 ||||| |||||||||||||||||| Sbjct: 253490 gcttgggaccagtcaatgataaca 253467
>emb|AL671973.13| Mouse DNA sequence from clone RP23-334J9 on chromosome 11 Contains a nucleolin (Ncl) pseudogene, complete sequence Length = 104321 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 aaagagaaaggggaaataagagca 137 |||||||||||||||| ||||||| Sbjct: 82642 aaagagaaaggggaaaaaagagca 82665
>gb|AC021651.17| Homo sapiens 12 BAC RP11-498B21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 67150 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 atacataaaggcttctgtgc 186 |||||||||||||||||||| Sbjct: 58838 atacataaaggcttctgtgc 58819
>gb|AC068781.19| Homo sapiens 3 BAC RP11-457K10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 197893 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 tgcagtcagaaaatacataa 174 |||||||||||||||||||| Sbjct: 112795 tgcagtcagaaaatacataa 112814
>ref|NM_073362.3| Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-135) (tag-135) mRNA, complete cds Length = 1559 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 tgtgaccagtcaatgataac 207 |||||||||||||||||||| Sbjct: 693 tgtgaccagtcaatgataac 674
>gb|AF301173.1|AF301173 Petunia integrifolia S12 self-incompatibility ribonuclease gene, partial cds Length = 492 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 catatcaatggagtacctgaacta 55 |||||||| ||||||||||||||| Sbjct: 364 catatcaaaggagtacctgaacta 387
>emb|AL772181.23| Mouse DNA sequence from clone RP23-118H3 on chromosome 2, complete sequence Length = 219704 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 acacaaagagaaaggggaaa 129 |||||||||||||||||||| Sbjct: 27224 acacaaagagaaaggggaaa 27205
>dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0432C03 Length = 164394 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 cacacaaagagaaaggggaa 128 |||||||||||||||||||| Sbjct: 162480 cacacaaagagaaaggggaa 162499 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 cacacaaagagaaaggggaa 128 |||||||||||||||||||| Sbjct: 131507 cacacaaagagaaaggggaa 131526
>dbj|AP004073.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0614D08 Length = 147548 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 cacacaaagagaaaggggaa 128 |||||||||||||||||||| Sbjct: 27280 cacacaaagagaaaggggaa 27299
>gb|AC152832.3| Ornithorhynchus anatinus BAC clone OABb-104A1 from chromosome unknown, complete sequence Length = 161382 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 attgagaaaaatgcagtcag 163 |||||||||||||||||||| Sbjct: 122171 attgagaaaaatgcagtcag 122190
>dbj|AP003687.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0660F12 Length = 147203 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 cacacaaagagaaaggggaa 128 |||||||||||||||||||| Sbjct: 39186 cacacaaagagaaaggggaa 39205 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 cacacaaagagaaaggggaa 128 |||||||||||||||||||| Sbjct: 8213 cacacaaagagaaaggggaa 8232
>gb|AF125442.1| Caenorhabditis elegans fosmid H04M03, complete sequence Length = 31818 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 aattgagaaaaatgcagtca 162 |||||||||||||||||||| Sbjct: 25645 aattgagaaaaatgcagtca 25664
>dbj|AP001034.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-729B4, complete sequence Length = 167934 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 tatcatgacttactgaggcg 528 |||||||||||||||||||| Sbjct: 107868 tatcatgacttactgaggcg 107849
>gb|AC154013.4| Mus musculus 6 BAC RP24-124B23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 151057 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 taacaaacatacgaaggaag 29 |||||||||||||||||||| Sbjct: 4535 taacaaacatacgaaggaag 4516
>emb|AL928597.19| Mouse DNA sequence from clone RP23-373N5 on chromosome 4, complete sequence Length = 163961 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 aaagagaaaggggaaataag 133 |||||||||||||||||||| Sbjct: 16381 aaagagaaaggggaaataag 16362
>gb|AC140429.2| Mus musculus BAC clone RP23-105O12 from 5, complete sequence Length = 203266 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 cacacaaagagaaaggggaa 128 |||||||||||||||||||| Sbjct: 186493 cacacaaagagaaaggggaa 186474
>emb|AL671765.6| Mouse DNA sequence from clone RP23-100L23 on chromosome X, complete sequence Length = 191093 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 atgtgtttatctgcagcaga 383 |||||||||||||||||||| Sbjct: 97048 atgtgtttatctgcagcaga 97029
>emb|AL606916.4| Mouse DNA sequence from clone RP23-144L24 on chromosome 4, complete sequence Length = 190214 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 gtgtttatctgcagcagaaa 385 |||||||||||||||||||| Sbjct: 33923 gtgtttatctgcagcagaaa 33904 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,190,166 Number of Sequences: 3902068 Number of extensions: 5190166 Number of successful extensions: 98523 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98268 Number of HSP's gapped (non-prelim): 255 length of query: 567 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 544 effective length of database: 17,143,297,704 effective search space: 9325953950976 effective search space used: 9325953950976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)