ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC010107.7| Drosophila melanogaster 3L BAC RP98-2B1 (Roswell ... 40 2.0
2gb|AC091220.3| Drosophila melanogaster 3L BAC RP98-7E7 (Roswell ... 40 2.0
3gb|AY060306.1| Drosophila melanogaster GH15083 full length cDNA 40 2.0
4gb|AE003551.3| Drosophila melanogaster chromosome 3L, section 34... 40 2.0
5emb|CR391999.9| Zebrafish DNA sequence from clone CH211-261L7 in... 38 7.8
6emb|CR382323.8| Zebrafish DNA sequence from clone DKEY-226M8 in ... 38 7.8
7dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 38 7.8
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.8
9gb|AC007215.49| Homo sapiens 12 BAC RP11-59H1 (Roswell Park Canc... 38 7.8
10dbj|AP004817.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.8
11dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.8
12gb|AF170726.2| Myxoma virus strain Lausanne, complete genome 38 7.8

>gb|AC010107.7| Drosophila melanogaster 3L BAC RP98-2B1 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 181063

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    acgtacgcatgcacatgcaa 77
             ||||||||||||||||||||
Sbjct: 56926 acgtacgcatgcacatgcaa 56945



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>gb|AC091220.3| Drosophila melanogaster 3L BAC RP98-7E7 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 179838

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    acgtacgcatgcacatgcaa 77
             ||||||||||||||||||||
Sbjct: 53186 acgtacgcatgcacatgcaa 53167



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>gb|AY060306.1| Drosophila melanogaster GH15083 full length cDNA
          Length = 3421

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 58  acgtacgcatgcacatgcaa 77
           ||||||||||||||||||||
Sbjct: 422 acgtacgcatgcacatgcaa 403



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>gb|AE003551.3| Drosophila melanogaster chromosome 3L, section 34 of 83 of the complete
              sequence
          Length = 285860

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     acgtacgcatgcacatgcaa 77
              ||||||||||||||||||||
Sbjct: 237768 acgtacgcatgcacatgcaa 237749



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>emb|CR391999.9| Zebrafish DNA sequence from clone CH211-261L7 in linkage group 5,
             complete sequence
          Length = 176753

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 66    atgcacatgcaatacaagc 84
             |||||||||||||||||||
Sbjct: 25326 atgcacatgcaatacaagc 25344



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>emb|CR382323.8| Zebrafish DNA sequence from clone DKEY-226M8 in linkage group 5, complete
              sequence
          Length = 143411

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 66     atgcacatgcaatacaagc 84
              |||||||||||||||||||
Sbjct: 139307 atgcacatgcaatacaagc 139325



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>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
          Length = 2324132

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 64     gcatgcacatgcaatacaa 82
              |||||||||||||||||||
Sbjct: 951880 gcatgcacatgcaatacaa 951862



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 52       ttacgtacgtacgcatgca 70
                |||||||||||||||||||
Sbjct: 32303707 ttacgtacgtacgcatgca 32303725



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>gb|AC007215.49| Homo sapiens 12 BAC RP11-59H1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 122001

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 98    ggatgggatgtagcactgg 116
             |||||||||||||||||||
Sbjct: 94770 ggatgggatgtagcactgg 94788



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>dbj|AP004817.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0539D10
          Length = 158691

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 52     ttacgtacgtacgcatgca 70
              |||||||||||||||||||
Sbjct: 147720 ttacgtacgtacgcatgca 147738



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>dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1004_A11
          Length = 132352

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 52    ttacgtacgtacgcatgca 70
             |||||||||||||||||||
Sbjct: 79539 ttacgtacgtacgcatgca 79557



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>gb|AF170726.2| Myxoma virus strain Lausanne, complete genome
          Length = 161773

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 52    ttacgtacgtacgcatgca 70
             |||||||||||||||||||
Sbjct: 77642 ttacgtacgtacgcatgca 77660


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 600,369
Number of Sequences: 3902068
Number of extensions: 600369
Number of successful extensions: 37222
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37165
Number of HSP's gapped (non-prelim): 57
length of query: 161
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 139
effective length of database: 17,147,199,772
effective search space: 2383460768308
effective search space used: 2383460768308
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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