ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC109807.9| Mus musculus chromosome 1, clone RP23-433B11, com... 38 8.4
2gb|AC132122.2| Mus musculus chromosome 7 clone RP24-78F23, compl... 38 8.4
3gb|AC101758.6| Mus musculus chromosome 1, clone RP24-75F14, comp... 38 8.4
4gb|AC125352.4| Mus musculus BAC clone RP23-451M13 from chromosom... 38 8.4
5gb|AC027644.9| Homo sapiens BAC clone RP11-792A8 from 7, complet... 38 8.4
6emb|BX571977.7| Zebrafish DNA sequence from clone DKEY-9E15, com... 38 8.4
7gb|AC145858.5| Pan troglodytes BAC clone RP43-6D19 from chromoso... 38 8.4
8emb|AL807741.8| Mouse DNA sequence from clone RP23-224B9 on chro... 38 8.4

>gb|AC109807.9| Mus musculus chromosome 1, clone RP23-433B11, complete sequence
          Length = 227679

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 126    atttgcacagnaaatttccaaa 147
              |||||||||| |||||||||||
Sbjct: 153935 atttgcacagtaaatttccaaa 153956



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>gb|AC132122.2| Mus musculus chromosome 7 clone RP24-78F23, complete sequence
          Length = 203549

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 44     cacattctttacatacatt 62
              |||||||||||||||||||
Sbjct: 130032 cacattctttacatacatt 130050



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>gb|AC101758.6| Mus musculus chromosome 1, clone RP24-75F14, complete sequence
          Length = 268826

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 126    atttgcacagnaaatttccaaa 147
              |||||||||| |||||||||||
Sbjct: 235386 atttgcacagtaaatttccaaa 235407



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>gb|AC125352.4| Mus musculus BAC clone RP23-451M13 from chromosome 8, complete sequence
          Length = 203416

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 131    cacagnaaatttccaaaaaaca 152
              ||||| ||||||||||||||||
Sbjct: 124778 cacaggaaatttccaaaaaaca 124799



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>gb|AC027644.9| Homo sapiens BAC clone RP11-792A8 from 7, complete sequence
          Length = 188207

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 138   aatttccaaaaaacacagg 156
             |||||||||||||||||||
Sbjct: 10921 aatttccaaaaaacacagg 10939



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>emb|BX571977.7| Zebrafish DNA sequence from clone DKEY-9E15, complete sequence
          Length = 82992

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 137   aaatttccaaaaaacacag 155
             |||||||||||||||||||
Sbjct: 52163 aaatttccaaaaaacacag 52145



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>gb|AC145858.5| Pan troglodytes BAC clone RP43-6D19 from chromosome 7, complete
             sequence
          Length = 196528

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 138   aatttccaaaaaacacagg 156
             |||||||||||||||||||
Sbjct: 24237 aatttccaaaaaacacagg 24255



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>emb|AL807741.8| Mouse DNA sequence from clone RP23-224B9 on chromosome 2, complete
              sequence
          Length = 165777

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 116    gaagaagcatatttgcaca 134
              |||||||||||||||||||
Sbjct: 125555 gaagaagcatatttgcaca 125573


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 837,743
Number of Sequences: 3902068
Number of extensions: 837743
Number of successful extensions: 55680
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55668
Number of HSP's gapped (non-prelim): 12
length of query: 172
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 150
effective length of database: 17,147,199,772
effective search space: 2572079965800
effective search space used: 2572079965800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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