ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61g09 |
|---|---|
| Clone Library Name | barley_pub |
>PHC1_HUMAN (P78364) Polyhomeotic-like protein 1 (hPH1) (Early development| regulatory protein 1) Length = 1004 Score = 37.7 bits (86), Expect = 0.021 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 8/87 (9%) Frame = -2 Query: 368 QQELPQAPWL--PEEQALPPMEVVCPSRPKAATLTRFGRPRLDVLPYRAPMTGAP----- 210 QQ+ PQA L P+ +PP + V PS+ + T +P L P P AP Sbjct: 436 QQQQPQATTLTAPQPPQVPPTQQVPPSQSQQQAQTLVVQPMLQSSPLSLPPDAAPKPPIP 495 Query: 209 -PSGPTHPQVAPPHMQLVSLATAQRXP 132 S P + PP + ++ AQ+ P Sbjct: 496 IQSKPPVAPIKPPQLGAAKMSAAQQPP 522
>CPSF6_XENLA (Q6DDW4) Cleavage and polyadenylation specificity factor 6| Length = 548 Score = 37.4 bits (85), Expect = 0.027 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Frame = -2 Query: 356 PQAPWLPEEQALPPMEVVCPSRPKAATLTRFGRPRLDVLPYRAPMTG-APPSGPTHPQVA 180 P P P PP V+ P +P +G+P + LP P G PP GP PQ Sbjct: 262 PPLPGPPNRGERPPPPVMFPGQP-------YGQPSIVTLPPGPPPPGYGPPPGPPPPQQG 314 Query: 179 PP 174 PP Sbjct: 315 PP 316
>FYB_MOUSE (O35601) FYN-binding protein (FYN-T-binding protein) (FYB-120/130)| (p120/p130) (SLP-76-associated phosphoprotein) (SLAP-130) Length = 819 Score = 37.4 bits (85), Expect = 0.027 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 11/66 (16%) Frame = -2 Query: 338 PEEQALPPMEVVCP-----SRPKAATLTRFGRP------RLDVLPYRAPMTGAPPSGPTH 192 P+++ALPP+ V+ P +RP LTRF + PY T PP PTH Sbjct: 330 PKQKALPPLSVLGPPPPKPNRPPNVDLTRFRKADSANSATKSQTPYST--TSLPPPPPTH 387 Query: 191 PQVAPP 174 P PP Sbjct: 388 PASQPP 393
>CPSF6_CHICK (Q5ZL34) Cleavage and polyadenylation specificity factor 6| Length = 551 Score = 32.0 bits (71), Expect(2) = 0.13 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Frame = -2 Query: 338 PEEQALPPMEVVCPSRPKAATLTRFGRPRLDVLPYRAP--MTG-APPSGPTHPQVAPP 174 P PP V+ P +P FG+P L LP P + G PP GP PQ PP Sbjct: 267 PNRGDRPPPPVLFPGQP-------FGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPP 317 Score = 21.9 bits (45), Expect(2) = 0.13 Identities = 9/21 (42%), Positives = 11/21 (52%) Frame = -3 Query: 511 PQARTSLDRSPPMTTLSRPGP 449 P R+ LD+ P L PGP Sbjct: 226 PPHRSQLDKLPTRPPLGPPGP 246
>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein| kinase with no lysine 2) (Protein kinase, lysine-deficient 2) Length = 2297 Score = 35.0 bits (79), Expect = 0.14 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Frame = -2 Query: 368 QQELPQAPWLPEEQALPPMEVVCPSRPKAATLTRFGRPRLDVLPYRAPMTGAPPSG--PT 195 Q LP P LP + LPP + P TR +P L P P PP P Sbjct: 941 QPALPPQPTLPPQPVLPPQPTLPPQPVLPPQPTRPPQPVLPPQPMLPPQPVLPPQPALPV 1000 Query: 194 HPQVAPPHM 168 P+ PH+ Sbjct: 1001 RPEPLQPHL 1009
>CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity factor 6| Length = 545 Score = 33.1 bits (74), Expect = 0.52 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 6/61 (9%) Frame = -2 Query: 338 PEEQALPPMEVVCPSR-----PKAATLTRFGRPRLDVLPYRAPMTG-APPSGPTHPQVAP 177 P Q LPP P+R P +FG+P + +P P G PP GP PQ P Sbjct: 254 PPGQGLPPPLGGPPNRGDRPPPPVLFPGQFGQPPMGPMPPGPPPPGYGPPPGPPPPQQGP 313 Query: 176 P 174 P Sbjct: 314 P 314
>CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity factor 6| Length = 551 Score = 32.0 bits (71), Expect = 1.1 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Frame = -2 Query: 338 PEEQALPPMEVVCPSRPKAATLTRFGRPRLDVLPYRAP--MTG-APPSGPTHPQVAPP 174 P PP V+ P +P FG+P L LP P + G PP GP PQ PP Sbjct: 267 PNRGDRPPPPVLFPGQP-------FGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPP 317
>CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity factor 6| (Cleavage and polyadenylation specificity factor 68 kDa subunit) (CPSF 68 kDa subunit) (Pre-mRNA cleavage factor Im 68-kDa subunit) (Protein HPBRII-4/7) Length = 551 Score = 32.0 bits (71), Expect = 1.1 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Frame = -2 Query: 338 PEEQALPPMEVVCPSRPKAATLTRFGRPRLDVLPYRAP--MTG-APPSGPTHPQVAPP 174 P PP V+ P +P FG+P L LP P + G PP GP PQ PP Sbjct: 267 PNRGDRPPPPVLFPGQP-------FGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPP 317
>E2F2_HUMAN (Q14209) Transcription factor E2F2 (E2F-2)| Length = 437 Score = 32.0 bits (71), Expect = 1.1 Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 14/93 (15%) Frame = -2 Query: 353 QAPWLPEEQALPPMEVVCPS----RPKAATLTRFGRPRLDVLPYRAPMTGAPPSGPTHPQ 186 Q P P E+ LP +CPS +P ++T P +P AP P P P Sbjct: 308 QEPDSPSEEPLPSTSTLCPSPDSAQPSSSTDPSIMEPTASSVPAPAP---TPQQAPPPPS 364 Query: 185 VAP----------PHMQLVSLATAQRXPSLFCT 117 + P PH L P+L C+ Sbjct: 365 LVPLEATDSLLELPHPLLQQTEDQFLSPTLACS 397
>CPSF6_PONPY (Q5NVH8) Cleavage and polyadenylation specificity factor 6| Length = 552 Score = 32.0 bits (71), Expect = 1.1 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Frame = -2 Query: 338 PEEQALPPMEVVCPSRPKAATLTRFGRPRLDVLPYRAP--MTG-APPSGPTHPQVAPP 174 P PP V+ P +P FG+P L LP P + G PP GP PQ PP Sbjct: 267 PNRGDRPPPPVLFPGQP-------FGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPP 317
>HXA3_HUMAN (O43365) Homeobox protein Hox-A3 (Hox-1E)| Length = 443 Score = 31.2 bits (69), Expect = 2.0 Identities = 17/42 (40%), Positives = 19/42 (45%) Frame = -2 Query: 290 PKAATLTRFGRPRLDVLPYRAPMTGAPPSGPTHPQVAPPHMQ 165 PKA L+ L P + P G PP P PQ APP Q Sbjct: 62 PKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQ 103
>KCNH4_RAT (Q9R1T9) Potassium voltage-gated channel subfamily H member 4| (Voltage-gated potassium channel subunit Kv12.3) (Ether-a-go-go-like potassium channel 1) (ELK channel 1) (rElk1) (Brain-specific eag-like channel 2) (BEC2) Length = 1017 Score = 30.8 bits (68), Expect = 2.6 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%) Frame = -1 Query: 360 TPTSTMAARGTSPAAHGGRLSKPPQGR---NPDQIWTP 256 TP+ +A RG+SP+ HG PP+G P Q+ TP Sbjct: 780 TPSPALAGRGSSPSLHG-----PPRGSAAWKPPQLLTP 812
>SOX9_MOUSE (Q04887) Transcription factor SOX-9| Length = 507 Score = 30.8 bits (68), Expect = 2.6 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = -2 Query: 362 ELPQAPWLPEEQALPPMEVVCPSRPKAATLT 270 + PQAP P +Q PP + P + +A TLT Sbjct: 351 QAPQAPQAPPQQQAPPQQPQAPQQQQAHTLT 381
>PHC1_MOUSE (Q64028) Polyhomeotic-like protein 1 (mPH1) (Early development| regulatory protein 1) (RAE-28) Length = 1012 Score = 30.8 bits (68), Expect = 2.6 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 8/87 (9%) Frame = -2 Query: 368 QQELPQAPWL--PEEQALPPMEVVCPSRPKAATLTRFGRPRLDVLPYRAP--MTGAPP-- 207 QQ+ Q L P+ +PP + V PS+ + T +P L P P T PP Sbjct: 443 QQQQQQGTTLTAPQPPQVPPTQQVPPSQSQQQAQTLVVQPMLQSSPLTLPPEPTSKPPIP 502 Query: 206 --SGPTHPQVAPPHMQLVSLATAQRXP 132 S P + PP + ++ Q+ P Sbjct: 503 IQSKPPVAPIKPPQLGAAKMSATQQPP 529
>PKN3_HUMAN (Q6P5Z2) Serine/threonine-protein kinase N3 (EC 2.7.11.13) (Protein| kinase PKN-beta) (Protein-kinase C-related kinase 3) Length = 889 Score = 30.8 bits (68), Expect = 2.6 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Frame = -2 Query: 359 LPQAPWLPEEQALPPM--EVVCPSRPKAATLTRFGRPRLDVLPYRAPMTGAPPSGPTHPQ 186 LP+ L EE PP + P P + R RP ++ P T PS P P Sbjct: 497 LPKKTPLGEEMTPPPKPPRLYLPQEPTSEETPRTKRPHME------PRTRRGPSPPASPT 550 Query: 185 VAPPHMQ 165 PP +Q Sbjct: 551 RKPPRLQ 557
>MMP21_HUMAN (Q8N119) Matrix metalloproteinase-21 precursor (EC 3.4.24.-)| (MMP-21) Length = 569 Score = 30.8 bits (68), Expect = 2.6 Identities = 16/32 (50%), Positives = 16/32 (50%) Frame = -2 Query: 284 AATLTRFGRPRLDVLPYRAPMTGAPPSGPTHP 189 AATL RPR V R P APPS P P Sbjct: 106 AATLAAMNRPRCGVPDMRPPPPSAPPSPPGPP 137
>DAC_STRSR (P15555) D-alanyl-D-alanine carboxypeptidase precursor (EC| 3.4.16.4) (DD-peptidase) (DD-carboxypeptidase) Length = 406 Score = 30.4 bits (67), Expect = 3.3 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Frame = +3 Query: 99 MTLTEPGAKQRWXSLCRG*GYELHVRRRNLRMGRA*WWSPGHGGAV-GQHVKARASKSGQ 275 M+ + Q+W ++ GY L +RRR+L G + + GH G V G + A ASK G+ Sbjct: 291 MSAAQLAQMQQWTTVNSTQGYGLGLRRRDLSCGISVY---GHTGTVQGYYTYAFASKDGK 347
>VGLB_HHV2H (P08666) Glycoprotein B precursor| Length = 904 Score = 30.4 bits (67), Expect = 3.3 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Frame = -1 Query: 375 SLSAGTPTSTMAARGTSP--AAHGGRLSKPPQGRNPDQIWTPSP*RAALPRPHDRGSTIR 202 S + P + A+ G + AA+GG S+PP +P T + R P +T Sbjct: 21 SAAPAAPAAPRASGGVAATVAANGGPASRPPPVPSPAT--TKARKRKTKKPPKRPEATPP 78 Query: 201 PDPSSSCAAAHAT 163 PD +++ AA HAT Sbjct: 79 PDANATVAAGHAT 91
>VGLB_HHV23 (P06763) Glycoprotein B precursor| Length = 904 Score = 30.4 bits (67), Expect = 3.3 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Frame = -1 Query: 375 SLSAGTPTSTMAARGTSP--AAHGGRLSKPPQGRNPDQIWTPSP*RAALPRPHDRGSTIR 202 S + P + A+ G + AA+GG S+PP +P T + R P +T Sbjct: 21 SAAPAAPAAPRASGGVAATVAANGGPASRPPPVPSPAT--TKARKRKTKKPPKRPEATPP 78 Query: 201 PDPSSSCAAAHAT 163 PD +++ AA HAT Sbjct: 79 PDANATVAAGHAT 91
>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein| Length = 1509 Score = 30.4 bits (67), Expect = 3.3 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Frame = -2 Query: 347 PWLPEEQALPPMEVVCPSRPKAATLTRFGRPRLDVLPYRAPMTGAP--PS-GPTHPQVAP 177 P P+ QA P P P AA L G LP++AP+ +P PS PT P P Sbjct: 696 PQAPDSQASP---APAPQIPAAAPLKGPGPSSSPSLPHQAPLGDSPHLPSPHPTRPPSRP 752 Query: 176 P 174 P Sbjct: 753 P 753
>RNB_HHV2H (P89479) Probable RNA-binding protein| Length = 151 Score = 30.4 bits (67), Expect = 3.3 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Frame = -2 Query: 359 LPQAPWLPEEQALP--PMEVVCPSRPKAATLTRFGRPRLDVLPYRAPMTGAPPSGP 198 +P+AP +P E +P P E P P+ + R R P R P PP P Sbjct: 89 IPRAPRVPREPRVPREPREPRVPRSPREPRVPRIPRDPRPPRPPRVPREPRPPREP 144
>SECD_MYCTU (Q50634) Protein-export membrane protein secD| Length = 573 Score = 30.4 bits (67), Expect = 3.3 Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 3/77 (3%) Frame = -2 Query: 359 LPQAPWLPEEQALPPMEVVCPSRPKAATLTRFGRP---RLDVLPYRAPMTGAPPSGPTHP 189 +P P E Q P E P +P A + G P + P P AP PT P Sbjct: 125 MPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPNPTSP 184 Query: 188 QVAPPHMQLVSLATAQR 138 PP + AT R Sbjct: 185 ASPPPAPPAEAPATDPR 201
>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)| Length = 268 Score = 30.4 bits (67), Expect = 3.3 Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 6/97 (6%) Frame = -1 Query: 357 PTSTMAARGTSPAAHGGRLS-----KPPQGRNPDQIWTPSP*RAALPRPHDRGSTIRPDP 193 P S R ++P H R S P +P +PSP +P P R S P P Sbjct: 139 PPSPPTPRSSTPIPHPPRRSLPSPPSPSPSPSPSPSPSPSPRSTPIPHPRKR-SPASPSP 197 Query: 192 SSSCAAAHA-TRIPSHGTEKXIFVLHLVQSTSSYDTS 85 S S + + + + PS V L S+S D S Sbjct: 198 SPSLSKSPSPSESPSLAPSPSDSVASLAPSSSPSDES 234
>APP1_SCHPO (Q9P7E8) Protein app1| Length = 857 Score = 30.4 bits (67), Expect = 3.3 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 8/86 (9%) Frame = -2 Query: 359 LPQAPWLPEEQALP--------PMEVVCPSRPKAATLTRFGRPRLDVLPYRAPMTGAPPS 204 +P+AP +P+ A+P P V P P+ ++ + P V+P AP PP Sbjct: 553 VPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQ--PPVAPVVP-EAPSVPQPPV 609 Query: 203 GPTHPQVAPPHMQLVSLATAQRXPSL 126 P P+V P Q ++ PS+ Sbjct: 610 APVAPEV-PSVPQRPAVPVVPEAPSV 634
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 30.0 bits (66), Expect = 4.4 Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 7/78 (8%) Frame = -1 Query: 366 AGTPTSTMAARGTSPAAHGGRLSKPP-QGRNPDQIWTPSP*RAALPR------PHDRGST 208 AG P S +A G P A R + PP G P P P ++PR P T Sbjct: 28 AGKPPSALAGGGQLPVAGAARAAGPPTPGLGPVPGPGPGPGPGSVPRRLDPKEPLGSQRT 87 Query: 207 IRPDPSSSCAAAHATRIP 154 P P + A A P Sbjct: 88 TSPTPKQASATAPGRESP 105
>TAB3_XENLA (Q7ZXH3) Mitogen-activated protein kinase kinase kinase| 7-interacting protein 3 homolog Length = 692 Score = 30.0 bits (66), Expect = 4.4 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Frame = -2 Query: 368 QQELPQAPWLPEEQALPPMEVVCPSRPKAATLTRFG--RPRLDVLPYRAPMTGAPPSGPT 195 +Q W P QA+ P CP P++ T++ +P++ +R+P P S T Sbjct: 222 RQTQQNTAWPPSPQAVLPHYNPCPPYPQSFQPTQYSPKQPQIPQSAFRSP----PTSQCT 277 Query: 194 HPQVAPPH 171 P +P H Sbjct: 278 SPYSSPQH 285
>GLIS3_MOUSE (Q6XP49) Zinc finger protein GLIS3 (GLI-similar 3)| Length = 780 Score = 30.0 bits (66), Expect = 4.4 Identities = 25/88 (28%), Positives = 32/88 (36%) Frame = -2 Query: 332 EQALPPMEVVCPSRPKAATLTRFGRPRLDVLPYRAPMTGAPPSGPTHPQVAPPHMQLVSL 153 + LP + + K L F LD LP P+ PP GP P A PH+ L Sbjct: 260 QPGLPGQDGQTANMLKTERLEEFPASALD-LPSALPLPLPPPQGPPPPYHAHPHLHHPEL 318 Query: 152 ATAQRXPSLFCTWFSQRHRMIHLGKIPC 69 + SL T + M G C Sbjct: 319 LPHTQSLSLAQTGLEEDGEMEDSGGKHC 346
>TCRG1_MOUSE (Q8CGF7) Transcription elongation regulator 1 (TATA box-binding| protein-associated factor 2S) (Transcription factor CA150) (p144) (Formin-binding protein 28) (FBP 28) Length = 1100 Score = 30.0 bits (66), Expect = 4.4 Identities = 16/34 (47%), Positives = 18/34 (52%) Frame = -2 Query: 266 FGRPRLDVLPYRAPMTGAPPSGPTHPQVAPPHMQ 165 FGRP D P PM PP G P + PPH+Q Sbjct: 67 FGRPPFD--PNMPPM---PPPGGIPPPMGPPHLQ 95
>TCRG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA box-binding| protein-associated factor 2S) (Transcription factor CA150) Length = 1098 Score = 30.0 bits (66), Expect = 4.4 Identities = 16/34 (47%), Positives = 18/34 (52%) Frame = -2 Query: 266 FGRPRLDVLPYRAPMTGAPPSGPTHPQVAPPHMQ 165 FGRP D P PM PP G P + PPH+Q Sbjct: 67 FGRPPFD--PNMPPM---PPPGGIPPPMGPPHLQ 95
>NFAC3_MOUSE (P97305) Nuclear factor of activated T-cells, cytoplasmic 3 (NF-ATc3)| (NFATc3) (T cell transcription factor NFAT4) (NF-AT4) (NFATx) Length = 1075 Score = 30.0 bits (66), Expect = 4.4 Identities = 22/68 (32%), Positives = 28/68 (41%) Frame = -2 Query: 302 CPSRPKAATLTRFGRPRLDVLPYRAPMTGAPPSGPTHPQVAPPHMQLVSLATAQRXPSLF 123 CPS P +AT P+ +P SGP+ PQ+ P Q S TA PS Sbjct: 915 CPSHPGSATAASPAASH--------PLASSPISGPSSPQLQPMPYQSPSSGTAS-SPSPT 965 Query: 122 CTWFSQRH 99 S +H Sbjct: 966 TRMHSGQH 973
>MMP9_RABIT (P41246) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)| (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB) Length = 707 Score = 29.6 bits (65), Expect = 5.7 Identities = 22/61 (36%), Positives = 25/61 (40%) Frame = -2 Query: 356 PQAPWLPEEQALPPMEVVCPSRPKAATLTRFGRPRLDVLPYRAPMTGAPPSGPTHPQVAP 177 P A PE Q P CP+ P R P +P TGAP +GPT P A Sbjct: 451 PPATTTPEPQPTAP-PTACPTWPATV--------RPSEHPTTSP-TGAPSAGPTGPPTAS 500 Query: 176 P 174 P Sbjct: 501 P 501
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 29.6 bits (65), Expect = 5.7 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 4/69 (5%) Frame = -2 Query: 368 QQELPQAPWLPEEQALPPMEVVCPSRPK----AATLTRFGRPRLDVLPYRAPMTGAPPSG 201 QQ P P P +Q PP + P P+ A ++ P + P P TGAPP G Sbjct: 84 QQPPPHQP--PHQQPPPPPQESKPVVPQGPGSAPGVSSAPPPAVSAPPANPPTTGAPP-G 140 Query: 200 PTHPQVAPP 174 P PP Sbjct: 141 PGPTPTPPP 149
>PROP1_BOVIN (Q8MJI9) Homeobox protein prophet of Pit-1 (PROP-1)| (Pituitary-specific homeodomain factor) Length = 226 Score = 29.6 bits (65), Expect = 5.7 Identities = 18/50 (36%), Positives = 22/50 (44%) Frame = -1 Query: 327 SPAAHGGRLSKPPQGRNPDQIWTPSP*RAALPRPHDRGSTIRPDPSSSCA 178 SPA G L +PP P TP P P P++R +P SS A Sbjct: 139 SPATFSGFLPEPPSC--PYSYPTPPPPMTCFPHPYNRALPSQPSTGSSFA 186
>CB027_HUMAN (Q580R0) Protein C2orf27| Length = 203 Score = 29.6 bits (65), Expect = 5.7 Identities = 16/49 (32%), Positives = 21/49 (42%) Frame = +2 Query: 149 WLGIRVACAAAQLEDGSGLMVEPRSWGRGRAARQGEGVQIWSGLRPWGG 295 WL + VA Q L +SW + + RQ G IW+ L W G Sbjct: 85 WLELEVAERGGQHSSSQQLPHCSQSWAQWKLWRQRPGFAIWAPLPHWRG 133
>SPT5_YEAST (P27692) Transcription elongation factor SPT5 (Chromatin elongation| factor SPT5) Length = 1063 Score = 24.3 bits (51), Expect(2) = 6.8 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = +1 Query: 133 GFLCAVARDTSCMCGGAT*GWVGPDGG 213 G A +S + GG T GW DGG Sbjct: 888 GIAAGAAATSSGLSGGMTPGWSSFDGG 914 Score = 23.5 bits (49), Expect(2) = 6.8 Identities = 8/15 (53%), Positives = 8/15 (53%) Frame = +2 Query: 251 GEGVQIWSGLRPWGG 295 G GV W G WGG Sbjct: 927 GGGVSSWGGASTWGG 941
>RECF_DEIRA (Q9RVE0) DNA replication and repair protein recF| Length = 359 Score = 29.3 bits (64), Expect = 7.5 Identities = 20/69 (28%), Positives = 32/69 (46%) Frame = +2 Query: 167 ACAAAQLEDGSGLMVEPRSWGRGRAARQGEGVQIWSGLRPWGGLDKRPPWAAGLVPRAAM 346 A A L+ G L ++ GRGR + +GV+ +G P GG A + P + Sbjct: 70 AYVRADLQQGGSLSIQEVGLGRGRRQLKVDGVRARTGDLPRGG-------AVWIRPEDSE 122 Query: 347 VLVGVPAER 373 ++ G P+ R Sbjct: 123 LVFGPPSGR 131
>SET1A_HUMAN (O15047) Histone-lysine N-methyltransferase, H3 lysine-4 specific| SET1 (EC 2.1.1.43) (Set1/Ash2 histone methyltransferase complex subunit SET1) (SET-domain-containing protein 1A) Length = 1707 Score = 29.3 bits (64), Expect = 7.5 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 5/66 (7%) Frame = -2 Query: 359 LPQAPWLPEEQALP---PMEVVCPSRPKAATLTRFGRPRLDVLPYR--APMTGAPPSGPT 195 LP A P E +P P+EV P R + +T P + P R P +PPS P Sbjct: 1074 LPSASPPPREVPVPTPAPVEVPVPERVAGSPVTPL--PEQEASPARPAGPTEESPPSAPL 1131 Query: 194 HPQVAP 177 P P Sbjct: 1132 RPPEPP 1137
>WASF2_HUMAN (Q9Y6W5) Wiskott-Aldrich syndrome protein family member 2| (WASP-family protein member 2) (WAVE-2 protein) (Verprolin homology domain-containing protein 2) Length = 498 Score = 29.3 bits (64), Expect = 7.5 Identities = 22/61 (36%), Positives = 23/61 (37%) Frame = -2 Query: 356 PQAPWLPEEQALPPMEVVCPSRPKAATLTRFGRPRLDVLPYRAPMTGAPPSGPTHPQVAP 177 P P P+ A PP P P AA P L P P GAPP P P P Sbjct: 353 PSFPPHPDFAAPPP-----PPPPPAADY-----PTLPPPPLSQPTGGAPPPPPPPPPPGP 402 Query: 176 P 174 P Sbjct: 403 P 403
>PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1404 Score = 29.3 bits (64), Expect = 7.5 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 7/81 (8%) Frame = -2 Query: 350 APWLPEEQALPPMEVVCPSRPKAATLTRFGRPRLDVLPYRAPMTGAPPS-------GPTH 192 AP P++ A P E+ P+ K T T +P AP T P+ PT Sbjct: 790 APTTPKKPA--PKELA-PTTTKGPTSTTSDKPAPTTPKETAPTTPKEPAPTTPKKPAPTT 846 Query: 191 PQVAPPHMQLVSLATAQRXPS 129 P+ PP VS T + P+ Sbjct: 847 PETPPPTTSEVSTPTTTKEPT 867
>PRB4S_HUMAN (P10163) Basic salivary proline-rich protein 4 allele S precursor| (Salivary proline-rich protein Po) (Parotid o protein) [Contains: Protein N1; Glycosylated protein A] Length = 247 Score = 29.3 bits (64), Expect = 7.5 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Frame = -1 Query: 324 PAAHGGRLSKPP-QGRNPDQIWTPSP*RAALPRPHDRGSTIRPDP 193 P H G+ +PP QG N Q P P + P P + RP P Sbjct: 92 PPPHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPP 136
>IL3RB_HUMAN (P32927) Cytokine receptor common beta chain precursor| (GM-CSF/IL-3/IL-5 receptor common beta-chain) (CD131 antigen) (CDw131) Length = 897 Score = 29.3 bits (64), Expect = 7.5 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = -1 Query: 357 PTSTMAARGTSPAAHGGRLSKPPQGRNPDQIWTPSP*RAALPR 229 P+ST AR + A G RLS P +P+ W P A P+ Sbjct: 204 PSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQ 246
>RIN3_MOUSE (P59729) Ras and Rab interactor 3 (Ras interaction/interference| protein 3) Length = 980 Score = 28.9 bits (63), Expect = 9.7 Identities = 17/42 (40%), Positives = 21/42 (50%) Frame = -2 Query: 299 PSRPKAATLTRFGRPRLDVLPYRAPMTGAPPSGPTHPQVAPP 174 P+ P A + T G PR P P+ PP GP P +APP Sbjct: 259 PATPDATSPTSKGSPRRPPPP--PPLPTVPPIGPARP-LAPP 297
>RGF1_SCHPO (Q9Y7U6) Rho1 guanine nucleotide exchange factor 1| Length = 1334 Score = 28.9 bits (63), Expect = 9.7 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%) Frame = -2 Query: 242 LPYRA----PMTGAPPSGPTHPQVAPPHMQLVSLATAQRXPSLFCTWFSQRHRMIHL 84 LP+R+ P + PP+ PTH + A P + ++ ++ PS+F T S H+++ L Sbjct: 62 LPFRSTSLQPPSSQPPAPPTHQREASP---VKNIEHSESFPSVFGT--SNNHQIVPL 113
>EMX2_MOUSE (Q04744) Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty| spiracles-like protein 2) Length = 253 Score = 28.9 bits (63), Expect = 9.7 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 11/51 (21%) Frame = -2 Query: 209 PSGPTHPQVAPPHM----QLVSL-------ATAQRXPSLFCTWFSQRHRMI 90 P+ P HP V PPH L SL A+ QR PS F W R+R + Sbjct: 82 PAVPVHP-VPPPHALAAHPLPSLHSPHPLFASQQRDPSTFYPWLIHRYRYL 131
>RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 28.9 bits (63), Expect = 9.7 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Frame = -2 Query: 356 PQAPWLPEEQALPPMEVV--CPSRPKAATLTRFGR-PRLDVLPYRAPMTGAPPSGPTHPQ 186 P P +P +LPPM + P P TL P + +P PMT PP P Sbjct: 188 PPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPPMSGMPPL 247 Query: 185 VAPP 174 PP Sbjct: 248 NPPP 251
>RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 28.9 bits (63), Expect = 9.7 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Frame = -2 Query: 356 PQAPWLPEEQALPPMEVV--CPSRPKAATLTRFGR-PRLDVLPYRAPMTGAPPSGPTHPQ 186 P P +P +LPPM + P P TL P + +P PMT PP P Sbjct: 188 PPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPPMSGMPPL 247 Query: 185 VAPP 174 PP Sbjct: 248 NPPP 251
>ICP0_HHV11 (P08393) Trans-acting transcriptional protein ICP0 (Immediate-early| protein IE110) (VMW110) (Alpha-0 protein) Length = 775 Score = 28.9 bits (63), Expect = 9.7 Identities = 24/75 (32%), Positives = 29/75 (38%) Frame = -2 Query: 356 PQAPWLPEEQALPPMEVVCPSRPKAATLTRFGRPRLDVLPYRAPMTGAPPSGPTHPQVAP 177 P +P P +P P P +A + RPR V AP APP GP AP Sbjct: 369 PASPHRPPAAPMPG-SAPRPGPPASAAASGPARPRAAV----APCVRAPPPGPGPRAPAP 423 Query: 176 PHMQLVSLATAQRXP 132 A A+R P Sbjct: 424 GAEPAARPADARRVP 438
>PRB4L_HUMAN (P10162) Basic salivary proline-rich protein 4 allele L (Salivary| proline-rich protein Po) (Parotid o protein) [Contains: Peptide P-D] (Fragment) Length = 276 Score = 28.9 bits (63), Expect = 9.7 Identities = 18/55 (32%), Positives = 23/55 (41%) Frame = -1 Query: 357 PTSTMAARGTSPAAHGGRLSKPPQGRNPDQIWTPSP*RAALPRPHDRGSTIRPDP 193 P ++GT P G +PPQG N Q P P + P P + RP P Sbjct: 112 PQGGNQSQGTPPPP-GKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSHRPPP 165
>AMEL_ORNAN (O97646) Amelogenin (Fragment)| Length = 121 Score = 28.9 bits (63), Expect = 9.7 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 2/83 (2%) Frame = -2 Query: 368 QQELPQAPWLPEEQALPPMEVVCPSRPKAATLTRFGRPRLDVLPYRAPMTGAPPSGPTHP 189 QQ+ P P +P M P +P+ + G+P + + P P P Sbjct: 11 QQQTPTHALQPHHH-IPVMAAQQPMQPQQPMMPMPGQPSVTPTQHHQSNLPQPAQQPFQP 69 Query: 188 QV--APPHMQLVSLATAQRXPSL 126 QV PPH + A A P + Sbjct: 70 QVPQQPPHQPIQPQAPAHPMPPM 92
>G3PT_HUMAN (O14556) Glyceraldehyde-3-phosphate dehydrogenase, testis-specific| (EC 1.2.1.12) (Spermatogenic cell-specific glyceraldehyde 3-phosphate dehydrogenase 2) (GAPDH-2) Length = 408 Score = 28.9 bits (63), Expect = 9.7 Identities = 18/58 (31%), Positives = 23/58 (39%) Frame = -2 Query: 329 QALPPMEVVCPSRPKAATLTRFGRPRLDVLPYRAPMTGAPPSGPTHPQVAPPHMQLVS 156 Q P P PKA + P+ + P R + PP P HP PP M V+ Sbjct: 19 QPCPVTRAPPPPEPKAEVEPQ---PQPEPTPVREEIKPPPPPLPPHPATPPPKMVSVA 73
>RBM12_MOUSE (Q8R4X3) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 1002 Score = 28.9 bits (63), Expect = 9.7 Identities = 22/60 (36%), Positives = 25/60 (41%) Frame = -2 Query: 356 PQAPWLPEEQALPPMEVVCPSRPKAATLTRFGRPRLDVLPYRAPMTGAPPSGPTHPQVAP 177 P P LP +PP+ V PS P TL PM+G PP P P VAP Sbjct: 212 PPVPTLPPVPPVPPIPPV-PSVPPMTTL--------------PPMSGMPPLNP--PPVAP 254
>MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 845 Score = 28.9 bits (63), Expect = 9.7 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 11/83 (13%) Frame = -1 Query: 357 PTSTMAARGTSPAAHGGRLSKPPQGRNP-----------DQIWTPSP*RAALPRPHDRGS 211 P++T + GT P G +PP P Q TP A P+P G+ Sbjct: 491 PSTTSSGGGTGPHPPSGTTLRPPTSSTPGGSPGAENSTSHQPATPGGDTAQTPKP---GT 547 Query: 210 TIRPDPSSSCAAAHATRIPSHGT 142 + P + +H PS GT Sbjct: 548 SQPMPPGVGTSTSHQPATPSGGT 570
>POGZ_MOUSE (Q8BZH4) Pogo transposable element with ZNF domain| Length = 1409 Score = 28.9 bits (63), Expect = 9.7 Identities = 19/54 (35%), Positives = 24/54 (44%) Frame = -2 Query: 347 PWLPEEQALPPMEVVCPSRPKAATLTRFGRPRLDVLPYRAPMTGAPPSGPTHPQ 186 P +P + A V P+ P+ P L LP A T PP+ PTHPQ Sbjct: 874 PLVPNKAATVKPVGVTPAEPQ-----ELAGPVLQALPSPAS-TATPPATPTHPQ 921 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,042,549 Number of Sequences: 219361 Number of extensions: 1658293 Number of successful extensions: 6217 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 5322 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6121 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
