ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 48 0.030
2gb|AC165230.12| Mus musculus chromosome 1, clone RP23-65C14, com... 40 7.4
3gb|AC121892.3| Mus musculus BAC clone RP24-155I11 from chromosom... 40 7.4
4gb|AC125191.4| Mus musculus BAC clone RP23-262C22 from 16, compl... 40 7.4
5gb|AC140027.11| Medicago truncatula clone mth2-5m21, complete se... 40 7.4
6emb|AL031313.1|HS581F12 Human DNA sequence from clone RP4-581F12... 40 7.4
7emb|BX323855.5| Zebrafish DNA sequence from clone CH211-134O20 i... 40 7.4
8dbj|AK140508.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 40 7.4
9emb|AL672042.8| Mouse DNA sequence from clone RP23-91P22 on chro... 40 7.4

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 482     cgaccggtccaacgaggtgcgggc 505
               ||||||||||||||||||||||||
Sbjct: 4576707 cgaccggtccaacgaggtgcgggc 4576684



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>gb|AC165230.12| Mus musculus chromosome 1, clone RP23-65C14, complete sequence
          Length = 174156

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    agcagaacaaagatggcttt 45
             ||||||||||||||||||||
Sbjct: 14009 agcagaacaaagatggcttt 14028



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>gb|AC121892.3| Mus musculus BAC clone RP24-155I11 from chromosome 1, complete sequence
          Length = 152888

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     agcagaacaaagatggcttt 45
              ||||||||||||||||||||
Sbjct: 109109 agcagaacaaagatggcttt 109128



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>gb|AC125191.4| Mus musculus BAC clone RP23-262C22 from 16, complete sequence
          Length = 196580

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    attttccctagatgtatcat 95
             ||||||||||||||||||||
Sbjct: 97163 attttccctagatgtatcat 97182



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>gb|AC140027.11| Medicago truncatula clone mth2-5m21, complete sequence
          Length = 131365

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    gatgtaactattgataaaac 70
             ||||||||||||||||||||
Sbjct: 60063 gatgtaactattgataaaac 60082



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>emb|AL031313.1|HS581F12 Human DNA sequence from clone RP4-581F12 on chromosome Xq21 Contains an
              eukaryotic translation initiation factor 3, subunit 1
              alpha, 35kDa (EIF3S1) pseudogene and a ribosomal protein
              L22 (RPL22) pseudogene, complete sequence
          Length = 166949

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     tttgttaaacagcagaacaa 35
              ||||||||||||||||||||
Sbjct: 164717 tttgttaaacagcagaacaa 164698



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>emb|BX323855.5| Zebrafish DNA sequence from clone CH211-134O20 in linkage group 7,
             complete sequence
          Length = 124192

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 48    ctagatgtaactattgataaaaca 71
             |||||||| |||||||||||||||
Sbjct: 79313 ctagatgtcactattgataaaaca 79290



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>dbj|AK140508.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:B930015K11 product:hypothetical
           protein, full insert sequence
          Length = 758

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  attttccctagatgtatcat 95
           ||||||||||||||||||||
Sbjct: 437 attttccctagatgtatcat 418



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>emb|AL672042.8| Mouse DNA sequence from clone RP23-91P22 on chromosome X, complete
             sequence
          Length = 198740

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    tctctagatgtaactattga 64
             ||||||||||||||||||||
Sbjct: 61039 tctctagatgtaactattga 61058


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,696,267
Number of Sequences: 3902068
Number of extensions: 3696267
Number of successful extensions: 66179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66138
Number of HSP's gapped (non-prelim): 41
length of query: 543
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 520
effective length of database: 17,143,297,704
effective search space: 8914514806080
effective search space used: 8914514806080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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