ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61f24 |
|---|---|
| Clone Library Name | barley_pub |
>THTM_HUMAN (P25325) 3-mercaptopyruvate sulfurtransferase (EC 2.8.1.2) (MST)| Length = 296 Score = 59.7 bits (143), Expect(2) = 8e-11 Identities = 25/35 (71%), Positives = 27/35 (77%) Frame = -2 Query: 541 VLTCASGVTACILALGLYRIGKHDVPVYDGSWTEW 437 V TC SGVTAC +ALG Y GK DVP+YDGSW EW Sbjct: 244 VATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEW 278 Score = 26.6 bits (57), Expect(2) = 8e-11 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%) Frame = -3 Query: 669 GHIPGTVCVPFPEM--SDGAQTAP 604 GHIPGTV +PF + +G + +P Sbjct: 202 GHIPGTVNIPFTDFLSQEGLEKSP 225
>THTM_RAT (P97532) 3-mercaptopyruvate sulfurtransferase (EC 2.8.1.2) (MST)| Length = 296 Score = 57.0 bits (136), Expect(2) = 2e-10 Identities = 24/35 (68%), Positives = 26/35 (74%) Frame = -2 Query: 541 VLTCASGVTACILALGLYRIGKHDVPVYDGSWTEW 437 V TC SGVTAC + LG + GK DVPVYDGSW EW Sbjct: 244 VATCGSGVTACHVVLGAFLCGKPDVPVYDGSWVEW 278 Score = 27.7 bits (60), Expect(2) = 2e-10 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%) Frame = -3 Query: 669 GHIPGTVCVPFPEM--SDGAQTAP 604 GHIPG+V +PF E S+G + +P Sbjct: 202 GHIPGSVNIPFTEFLTSEGLEKSP 225
>THTM_MOUSE (Q99J99) 3-mercaptopyruvate sulfurtransferase (EC 2.8.1.2) (MST)| Length = 296 Score = 57.4 bits (137), Expect(2) = 4e-10 Identities = 24/35 (68%), Positives = 26/35 (74%) Frame = -2 Query: 541 VLTCASGVTACILALGLYRIGKHDVPVYDGSWTEW 437 V TC SGVTAC + LG + GK DVPVYDGSW EW Sbjct: 244 VATCGSGVTACHVVLGAFLCGKSDVPVYDGSWVEW 278 Score = 26.6 bits (57), Expect(2) = 4e-10 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%) Frame = -3 Query: 669 GHIPGTVCVPFPEM--SDGAQTAP 604 GHIPG+V +PF E ++G + +P Sbjct: 202 GHIPGSVNIPFTEFLTNEGLEKSP 225
>THTR_RAT (P24329) Thiosulfate sulfurtransferase (EC 2.8.1.1) (Rhodanese)| Length = 296 Score = 53.1 bits (126), Expect(2) = 5e-08 Identities = 22/35 (62%), Positives = 25/35 (71%) Frame = -2 Query: 541 VLTCASGVTACILALGLYRIGKHDVPVYDGSWTEW 437 + TC GVTAC +AL Y GK DV VYDGSW+EW Sbjct: 244 IATCRKGVTACHIALAAYLCGKPDVAVYDGSWSEW 278 Score = 23.5 bits (49), Expect(2) = 5e-08 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%) Frame = -3 Query: 672 SGHIPGTVCVPFPEM--SDGAQTAP 604 SGHI G+V VPF DG + +P Sbjct: 201 SGHIRGSVNVPFMNFLTEDGFEKSP 225
>THTR_CHICK (P25324) Thiosulfate sulfurtransferase (EC 2.8.1.1) (Rhodanese)| Length = 289 Score = 52.4 bits (124), Expect(2) = 7e-08 Identities = 22/33 (66%), Positives = 24/33 (72%) Frame = -2 Query: 535 TCASGVTACILALGLYRIGKHDVPVYDGSWTEW 437 TC GVTAC +AL Y GK DV VYDGSW+EW Sbjct: 243 TCRKGVTACHIALAAYLCGKPDVAVYDGSWSEW 275 Score = 23.9 bits (50), Expect(2) = 7e-08 Identities = 9/12 (75%), Positives = 10/12 (83%) Frame = -3 Query: 672 SGHIPGTVCVPF 637 SGHIPG V +PF Sbjct: 198 SGHIPGAVNMPF 209
>THTR_MOUSE (P52196) Thiosulfate sulfurtransferase (EC 2.8.1.1) (Rhodanese)| Length = 296 Score = 52.8 bits (125), Expect(2) = 9e-08 Identities = 22/35 (62%), Positives = 25/35 (71%) Frame = -2 Query: 541 VLTCASGVTACILALGLYRIGKHDVPVYDGSWTEW 437 + TC GVTAC +AL Y GK DV VYDGSW+EW Sbjct: 244 IATCRKGVTACHVALAAYLCGKPDVAVYDGSWSEW 278 Score = 23.1 bits (48), Expect(2) = 9e-08 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%) Frame = -3 Query: 672 SGHIPGTVCVPFPEM--SDGAQTAP 604 SGHI G+V +PF + DG + +P Sbjct: 201 SGHIRGSVNMPFMDFLTKDGFEKSP 225
>THTR_HUMAN (Q16762) Thiosulfate sulfurtransferase (EC 2.8.1.1) (Rhodanese)| Length = 296 Score = 52.8 bits (125), Expect(2) = 2e-07 Identities = 22/35 (62%), Positives = 25/35 (71%) Frame = -2 Query: 541 VLTCASGVTACILALGLYRIGKHDVPVYDGSWTEW 437 + TC GVTAC +AL Y GK DV VYDGSW+EW Sbjct: 244 IATCRKGVTACHVALAAYLCGKPDVAVYDGSWSEW 278 Score = 22.3 bits (46), Expect(2) = 2e-07 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%) Frame = -3 Query: 672 SGHIPGTVCVPFPEM--SDGAQTAP 604 SGHI G V +PF + DG + P Sbjct: 201 SGHIRGAVNMPFMDFLTEDGFEKGP 225
>THTR_BOVIN (P00586) Thiosulfate sulfurtransferase (EC 2.8.1.1) (Rhodanese)| Length = 296 Score = 51.6 bits (122), Expect(2) = 3e-07 Identities = 21/35 (60%), Positives = 24/35 (68%) Frame = -2 Query: 541 VLTCASGVTACILALGLYRIGKHDVPVYDGSWTEW 437 + TC GVTAC +AL Y GK DV +YDGSW EW Sbjct: 244 IATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEW 278 Score = 22.3 bits (46), Expect(2) = 3e-07 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%) Frame = -3 Query: 672 SGHIPGTVCVPFPEM--SDGAQTAP 604 SGHI G+V +PF DG + +P Sbjct: 201 SGHIRGSVNMPFMNFLTEDGFEKSP 225
>THTR_CRIGR (P46635) Thiosulfate sulfurtransferase (EC 2.8.1.1) (Rhodanese)| Length = 296 Score = 53.1 bits (126), Expect = 7e-07 Identities = 22/35 (62%), Positives = 25/35 (71%) Frame = -2 Query: 541 VLTCASGVTACILALGLYRIGKHDVPVYDGSWTEW 437 + TC GVTAC +AL Y GK DV VYDGSW+EW Sbjct: 244 IATCRKGVTACHIALAAYLCGKPDVAVYDGSWSEW 278
>THTM_ECOLI (P31142) 3-mercaptopyruvate sulfurtransferase (EC 2.8.1.2)| (Rhodanese-like protein) (MST) Length = 280 Score = 43.1 bits (100), Expect(2) = 8e-05 Identities = 17/40 (42%), Positives = 27/40 (67%) Frame = -2 Query: 541 VLTCASGVTACILALGLYRIGKHDVPVYDGSWTEWEALPD 422 +++C SGVTA ++ L L + +V +YDG+W+EW A D Sbjct: 234 IVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGARAD 273 Score = 22.7 bits (47), Expect(2) = 8e-05 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = -3 Query: 669 GHIPGTVCVPFPEM 628 GHIPG + VP+ E+ Sbjct: 193 GHIPGALNVPWTEL 206
>THTM_ECO57 (P58388) 3-mercaptopyruvate sulfurtransferase (EC 2.8.1.2)| (Rhodanese-like protein) (MST) Length = 280 Score = 43.1 bits (100), Expect(2) = 8e-05 Identities = 17/40 (42%), Positives = 27/40 (67%) Frame = -2 Query: 541 VLTCASGVTACILALGLYRIGKHDVPVYDGSWTEWEALPD 422 +++C SGVTA ++ L L + +V +YDG+W+EW A D Sbjct: 234 IVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGARAD 273 Score = 22.7 bits (47), Expect(2) = 8e-05 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = -3 Query: 669 GHIPGTVCVPFPEM 628 GHIPG + VP+ E+ Sbjct: 193 GHIPGALNVPWTEL 206
>THTM_SCHPO (Q9USJ1) Putative 3-mercaptopyruvate sulfurtransferase (EC 2.8.1.2)| (MST) Length = 298 Score = 36.6 bits (83), Expect(2) = 3e-04 Identities = 20/54 (37%), Positives = 29/54 (53%) Frame = -2 Query: 559 PLITRFVLTCASGVTACILALGLYRIGKHDVPVYDGSWTEWEALPDNDYPIVTS 398 P+IT +C SGVTA +L L G DV VYD SW+ + + D ++ + Sbjct: 247 PIIT----SCGSGVTASVLFAALKECGFKDVRVYDESWSGYGKRANEDSSLLAT 296 Score = 27.3 bits (59), Expect(2) = 3e-04 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -3 Query: 672 SGHIPGTVCVPFPEMSDGAQTAP 604 SGHIP ++ +PF E + TAP Sbjct: 204 SGHIPTSINIPFTETTAAGITAP 226
>THTR_YEAST (Q08686) Putative thiosulfate sulfurtransferase (EC 2.8.1.1)| Length = 304 Score = 38.1 bits (87), Expect(2) = 0.001 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = -2 Query: 541 VLTCASGVTACILALGLYRIGKHDVPVYDGSWTEW 437 + +C +GV+ I+ L G +V +YDGSWTEW Sbjct: 256 ICSCGTGVSGVIIKTALELAGVPNVRLYDGSWTEW 290 Score = 23.9 bits (50), Expect(2) = 0.001 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = -3 Query: 672 SGHIPGTVCVPFPEMSD 622 SGHIPGT +P+ + D Sbjct: 205 SGHIPGTQPLPYGSLLD 221
>THT3_MYCTU (Q59570) Putative thiosulfate sulfurtransferase sseB (EC 2.8.1.1)| Length = 284 Score = 35.4 bits (80), Expect(2) = 0.035 Identities = 15/36 (41%), Positives = 23/36 (63%) Frame = -2 Query: 532 CASGVTACILALGLYRIGKHDVPVYDGSWTEWEALP 425 C SGV+A ++ L IG+ D ++ GSW+EW + P Sbjct: 241 CGSGVSAAVIVAALAVIGQ-DAELFPGSWSEWSSDP 275 Score = 21.2 bits (43), Expect(2) = 0.035 Identities = 7/11 (63%), Positives = 9/11 (81%) Frame = -3 Query: 672 SGHIPGTVCVP 640 +GHIPG + VP Sbjct: 195 AGHIPGAINVP 205
>THTM_PSEAE (Q9I452) Probable 3-mercaptopyruvate sulfurtransferase (EC 2.8.1.2)| (Rhodanese-like protein) (MST) Length = 284 Score = 33.9 bits (76), Expect(2) = 0.035 Identities = 19/51 (37%), Positives = 24/51 (47%) Frame = -2 Query: 553 ITRFVLTCASGVTACILALGLYRIGKHDVPVYDGSWTEWEALPDNDYPIVT 401 + V C SGVTAC L G +Y GSW+EW + D P+ T Sbjct: 234 VDELVAYCGSGVTACHNLFALSLAGFPLPRLYAGSWSEW--ITDPRRPVAT 282 Score = 22.7 bits (47), Expect(2) = 0.035 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%) Frame = -3 Query: 672 SGHIPGTVCVPFPEM--SDGAQTAP 604 +GHIPG C F + SDG P Sbjct: 194 AGHIPGAQCAAFTDNLGSDGRFLPP 218
>THTR_METTH (O26719) Putative thiosulfate sulfurtransferase (EC 2.8.1.1)| Length = 286 Score = 32.3 bits (72), Expect(2) = 0.058 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Frame = -2 Query: 547 RFVLTCASGVTACILALGLYR--IGKHDVPVYDGSWTEWEALPDNDYPIVT 401 + + +C +G A L L+R +G DV +Y+GS+TEW + DN P VT Sbjct: 234 KIICSCGTGREATNEFL-LFRWYLGYPDVRIYEGSFTEWTQIEDN--PTVT 281 Score = 23.5 bits (49), Expect(2) = 0.058 Identities = 8/16 (50%), Positives = 12/16 (75%) Frame = -3 Query: 669 GHIPGTVCVPFPEMSD 622 GHIPG V +P+ ++ D Sbjct: 192 GHIPGAVNLPWADLMD 207
>THTR_SYNP7 (P27477) Putative thiosulfate sulfurtransferase precursor (EC| 2.8.1.1) (Rhodanese-like protein) Length = 320 Score = 31.2 bits (69), Expect(2) = 0.26 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%) Frame = -2 Query: 541 VLTCASGVTACILALGLYRIGKHD-VPVYDGSWTEWEA 431 ++TC++G A + L L + K+ V +Y+GSWTE+ A Sbjct: 271 IVTCSTGREASLQYLVLKHLLKYPKVRIYEGSWTEYSA 308 Score = 22.3 bits (46), Expect(2) = 0.26 Identities = 7/17 (41%), Positives = 12/17 (70%) Frame = -3 Query: 672 SGHIPGTVCVPFPEMSD 622 +GHIPG +P+P ++ Sbjct: 219 NGHIPGARNIPWPTFTE 235
>NUKM_TRYBB (Q26783) NADH-ubiquinone oxidoreductase 20 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-20KD) (CI-20KD) Length = 202 Score = 33.1 bits (74), Expect = 0.79 Identities = 19/51 (37%), Positives = 27/51 (52%) Frame = -3 Query: 249 TMANVYRPIMRKSHVERVNIKFVLMLYLCDNVGNVLAFLADVMRVK*MGCE 97 T+ N PI+R +V+ VN K+V+ + C N G F V+R GCE Sbjct: 114 TVTNKMAPILRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLR----GCE 160
>THT2_MYCTU (P96888) Putative thiosulfate sulfurtransferase sseA (EC 2.8.1.1)| Length = 297 Score = 32.0 bits (71), Expect = 1.8 Identities = 12/16 (75%), Positives = 13/16 (81%) Frame = -2 Query: 484 IGKHDVPVYDGSWTEW 437 +GK DV YDGSWTEW Sbjct: 262 LGKADVRNYDGSWTEW 277
>THT2_MYCBO (Q7TWT6) Putative thiosulfate sulfurtransferase sseA (EC 2.8.1.1)| Length = 297 Score = 32.0 bits (71), Expect = 1.8 Identities = 12/16 (75%), Positives = 13/16 (81%) Frame = -2 Query: 484 IGKHDVPVYDGSWTEW 437 +GK DV YDGSWTEW Sbjct: 262 LGKADVRNYDGSWTEW 277
>YNJE_ECOLI (P78067) Putative thiosulfate sulfurtransferase ynjE precursor (EC| 2.8.1.1) Length = 435 Score = 31.6 bits (70), Expect = 2.3 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = -2 Query: 532 CASGVTACILALGLYRIGKHDVPVYDGSWTEWEALPDNDYPIVT 401 C +G A + +G +V VYDG W EW + P N P+ T Sbjct: 385 CGTGWRASETFMYARAMGWKNVSVYDGGWYEWSSDPKN--PVAT 426
>MURE_CHLTE (Q8KGC9) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 508 Score = 30.4 bits (67), Expect = 5.1 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = -2 Query: 529 ASGVTACILALGLYRIGKHDVPV 461 ASGV A + GL RIG HD+P+ Sbjct: 141 ASGVAAGYIGTGLCRIGNHDIPL 163
>HGP3_HAEIN (P44836) Probable hemoglobin and hemoglobin-haptoglobin-binding| protein 3 precursor Length = 1084 Score = 30.0 bits (66), Expect = 6.7 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = -3 Query: 315 DISLWQTLHQSRYRGYRKKTICTMAN 238 + SLW T H +Y G+ +KT+ +M N Sbjct: 570 EFSLWHTQHSLKYGGFYEKTLKSMVN 595
>VG67_ICHV1 (Q00107) Hypothetical gene 67 protein| Length = 1556 Score = 30.0 bits (66), Expect = 6.7 Identities = 23/97 (23%), Positives = 41/97 (42%) Frame = -2 Query: 559 PLITRFVLTCASGVTACILALGLYRIGKHDVPVYDGSWTEWEALPDNDYPIVTSTGS*IR 380 P+ V G T +G + + ++P +WT + +PD Y V +TG+ Sbjct: 924 PIFEHMVQRAVDGHTTLRNTVGAVELFR-EIPGIINTWTSYRVVPDRGYVPVGATGAMAV 982 Query: 379 HSEVMNAAVASCGIQRRLSAQ*YFPLANFASKSIQRL 269 M + + LS + +P AN+ S++I L Sbjct: 983 SDAPMREQLMALTSDTELSFK--YPRANWYSENILSL 1017
>TBB_LEIME (P21148) Tubulin beta chain (Beta tubulin)| Length = 445 Score = 30.0 bits (66), Expect = 6.7 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 6/41 (14%) Frame = +3 Query: 552 IKGNACLLELFR*L------ICREERFVHHQTSQGMEHIQF 656 I N C+ E+FR + + R +RF+H T +GM+ ++F Sbjct: 370 IGNNTCIQEMFRRVGEQFTGMFRRKRFLHWYTGEGMDEMEF 410
>NUOB_RICPR (Q9ZDH2) NADH-quinone oxidoreductase chain B (EC 1.6.99.5) (NADH| dehydrogenase I, chain B) (NDH-1, chain B) Length = 174 Score = 26.9 bits (58), Expect(2) = 9.5 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = -3 Query: 249 TMANVYRPIMRKSHVERVNIKFVLMLYLCDNVGNVLAFLADVMRVK*MGCE 97 T+ N P +RK + + K+VL + C N G F V+R GC+ Sbjct: 84 TLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVR----GCD 130 Score = 21.2 bits (43), Expect(2) = 9.5 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = -1 Query: 302 GKLCIKVDTEVIEKKLFVLWPMSIG 228 G L KVD + + LWPM+ G Sbjct: 20 GFLLSKVDEVISWARANSLWPMTFG 44 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,796,456 Number of Sequences: 219361 Number of extensions: 2116656 Number of successful extensions: 5377 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 5209 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5377 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6598423128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
