ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61f23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467920.1| Oryza sativa (japonica cultivar-group), mRNA 301 1e-78
2dbj|AK060417.1| Oryza sativa (japonica cultivar-group) cDNA clon... 301 1e-78
3gb|AY105969.1| Zea mays PCO131995 mRNA sequence 240 5e-60
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
5dbj|AP005002.3| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
6ref|NM_112804.3| Arabidopsis thaliana ATPREP1/ATZNMP; metalloend... 70 1e-08
7gb|AY091051.1| Arabidopsis thaliana putative metalloprotease (At... 70 1e-08
8gb|AY090240.1| Arabidopsis thaliana AT3g19170/MVI11_8 mRNA, comp... 70 1e-08
9gb|BT006362.1| Arabidopsis thaliana At3g19170/MVI11_8 gene, comp... 70 1e-08
10gb|BT002372.1| Arabidopsis thaliana clone U19043 putative metall... 70 1e-08
11dbj|AP000419.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 68 4e-08
12emb|AL589862.28| Human DNA sequence from clone GS1-165F21 on chr... 46 0.14
13gb|AF326573.1| Dengue virus type 4 strain 814669, complete genome 44 0.55
14gb|AY243469.1| Chimeric Dengue virus vector p4(Delta30)-D2-CME, ... 44 0.55
15gb|AY243468.1| Chimeric Dengue virus vector p4-D2-CME, complete ... 44 0.55
16gb|AY243467.1| Chimeric Dengue virus vector p4(Delta30)-D2-ME, c... 44 0.55
17gb|AY243466.1| Chimeric Dengue virus vector p4-D2-ME, complete s... 44 0.55
18gb|AY376438.1| Dengue virus vector p4(Delta30), complete sequence 44 0.55
19gb|AF375822.1|AF375822 Dengue virus type 4 recombinant clone 2A,... 44 0.55
20gb|AF326827.1| Dengue virus type 4 recombinant clone rDEN4del30,... 44 0.55
21gb|AF326826.1| Dengue virus type 4 recombinant clone 2Adel30, co... 44 0.55
22gb|AF326825.1| Dengue virus type 4 recombinant clone rDEN4, comp... 44 0.55
23gb|AF289029.1|AF289029 dengue virus type 4 China Guangzhou B5 st... 44 0.55
24gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complet... 44 0.55
25gb|AY947539.1| Dengue virus type 4 strain H241, complete genome 44 0.55
26gb|M14931.2|DENSTRA Dengue virus type 4 polyprotein precursor, g... 44 0.55
27gb|AY776330.1| Dengue virus type 4 strain Taiwan-2K0713 polyprot... 44 0.55
28gb|AY618993.1| Dengue virus type 4 strain ThD4_0734_00, complete... 44 0.55
29gb|AY618992.1| Dengue virus type 4 strain ThD4_0485_01, complete... 44 0.55
30gb|AY618991.1| Dengue virus type 4 strain ThD4_0087_77, complete... 44 0.55
31gb|AY618990.1| Dengue virus type 4 strain ThD4_0348_91, complete... 44 0.55
32gb|AY858050.1| Dengue virus type 4 strain SW38i polyprotein gene... 44 0.55
33gb|AY858049.1| Dengue virus type 4 strain SW36i polyprotein gene... 44 0.55
34gb|AY656168.1| Chimeric dengue virus vector p4(delta30)-D3L-ME, ... 44 0.55
35gb|AY656167.1| Chimeric dengue virus vector p4-D3L-ME, complete ... 44 0.55
36gb|AY648301.1| Dengue virus type 4 vector p4, complete sequence 44 0.55
37gb|AC115834.8| Mus musculus chromosome 3, clone RP24-159L1, comp... 42 2.2
38emb|Z81036.1|CEC16C2 Caenorhabditis elegans Cosmid C16C2, comple... 42 2.2
39emb|Z99119.2|BSUB0016 Bacillus subtilis complete genome (section... 42 2.2
40emb|X92428.1|ZMHOX1BGN Z.mays mRNA for Hox1b protein 42 2.2
41emb|AL731817.11| Mouse DNA sequence from clone RP23-3J16 on chro... 42 2.2
42gb|AC005375.4|AC005375 Homo sapiens chromosome 17, clone hRPK.38... 42 2.2
43gb|L17320.1|BACACKA Bacillus subtilis acetate kinase (ackA) gene... 42 2.2
44gb|AF008220.1|AF008220 Bacillus subtilis rrnB-dnaB genomic region 42 2.2
45ref|NM_152884.2| Danio rerio caspase b (caspb), mRNA 40 8.6
46gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118... 40 8.6
47gb|AC132339.3| Mus musculus BAC clone RP24-165O21 from chromosom... 40 8.6
48gb|CP000243.1| Escherichia coli UTI89, complete genome 40 8.6
49gb|AC091726.2| Gallus gallus clone WAG-126P17, complete sequence 40 8.6
50emb|AL078612.8|HSDJ65P5 Human DNA sequence from clone RP1-65P5 o... 40 8.6
51emb|AL021069.1|HS970D1 Human DNA sequence from clone RP5-970D1 o... 40 8.6
52emb|BX469930.13| Zebrafish DNA sequence from clone CH211-114L13 ... 40 8.6
53gb|DQ022755.1| Danio rerio caspase b (caspb) mRNA, complete cds 40 8.6
54gb|BC095000.1| Danio rerio caspase b, mRNA (cDNA clone MGC:10980... 40 8.6
55gb|AF327410.1|AF327410 Danio rerio Caspy2 (caspy2) mRNA, complet... 40 8.6
56gb|BC094169.1| Xenopus laevis cDNA clone MGC:115330 IMAGE:694890... 40 8.6
57gb|AC129207.4| Mus musculus chromosome 5 clone RP24-280N5, compl... 40 8.6
58emb|Z34802.1|CEM88 Caenorhabditis elegans Cosmid M88, complete s... 40 8.6 
>ref|XM_467920.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 675

 Score =  301 bits (152), Expect = 1e-78
 Identities = 263/300 (87%)
 Strand = Plus / Minus

                                                                       
Query: 322 tcacaggcacttcttgatgtctgaaaataacgacttctctttgtttgctgcctcgacgtc 381
           ||||||||||||||||| ||||||||| || |  || || ||||||||||| ||||||||
Sbjct: 372 tcacaggcacttcttgacgtctgaaaacaagggattttccttgtttgctgcttcgacgtc 313

                                                                       
Query: 382 gtcaggcgatgctacagccaccacaaccccattgtcgttgatcgtctcgacggcatcagc 441
            ||||| ||||| || || ||||| || || |||||||| || || ||||| ||||||||
Sbjct: 312 ctcaggtgatgcaacggcaaccacgacaccgttgtcgttaattgtttcgacagcatcagc 253

                                                                       
Query: 442 aaactccttgaaatccttcacgctggttgcgagtatctcttcacgcctttgctggcgttc 501
           |||||||||||||||||||| ||||||||  |||||||||||||| ||||||||||||||
Sbjct: 252 aaactccttgaaatccttcaagctggttgatagtatctcttcacgtctttgctggcgttc 193

                                                                       
Query: 502 ctcctcagtgatgcccaacaaataccgcatcagactgctgtaacctttagcatctggtag 561
           |||| | |||||||||| ||| || ||||| |||||||||||||||||||||||||| ||
Sbjct: 192 ctccaccgtgatgcccagcaagtatcgcattagactgctgtaacctttagcatctggcag 133

                                                                       
Query: 562 ctgataggaatcaacatcccctatggtgccaataatagcttttgtgagagcatcatcatc 621
           ||| ||||||||||| || |||||||| |||||||||||||||||||||  |||||||||
Sbjct: 132 ctggtaggaatcaacgtcacctatggtaccaataatagcttttgtgagacaatcatcatc 73
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>dbj|AK060417.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F01, full
           insert sequence
          Length = 675

 Score =  301 bits (152), Expect = 1e-78
 Identities = 263/300 (87%)
 Strand = Plus / Minus

                                                                       
Query: 322 tcacaggcacttcttgatgtctgaaaataacgacttctctttgtttgctgcctcgacgtc 381
           ||||||||||||||||| ||||||||| || |  || || ||||||||||| ||||||||
Sbjct: 372 tcacaggcacttcttgacgtctgaaaacaagggattttccttgtttgctgcttcgacgtc 313

                                                                       
Query: 382 gtcaggcgatgctacagccaccacaaccccattgtcgttgatcgtctcgacggcatcagc 441
            ||||| ||||| || || ||||| || || |||||||| || || ||||| ||||||||
Sbjct: 312 ctcaggtgatgcaacggcaaccacgacaccgttgtcgttaattgtttcgacagcatcagc 253

                                                                       
Query: 442 aaactccttgaaatccttcacgctggttgcgagtatctcttcacgcctttgctggcgttc 501
           |||||||||||||||||||| ||||||||  |||||||||||||| ||||||||||||||
Sbjct: 252 aaactccttgaaatccttcaagctggttgatagtatctcttcacgtctttgctggcgttc 193

                                                                       
Query: 502 ctcctcagtgatgcccaacaaataccgcatcagactgctgtaacctttagcatctggtag 561
           |||| | |||||||||| ||| || ||||| |||||||||||||||||||||||||| ||
Sbjct: 192 ctccaccgtgatgcccagcaagtatcgcattagactgctgtaacctttagcatctggcag 133

                                                                       
Query: 562 ctgataggaatcaacatcccctatggtgccaataatagcttttgtgagagcatcatcatc 621
           ||| ||||||||||| || |||||||| |||||||||||||||||||||  |||||||||
Sbjct: 132 ctggtaggaatcaacgtcacctatggtaccaataatagcttttgtgagacaatcatcatc 73
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>gb|AY105969.1| Zea mays PCO131995 mRNA sequence
          Length = 1779

 Score =  240 bits (121), Expect = 5e-60
 Identities = 196/221 (88%)
 Strand = Plus / Minus

                                                                        
Query: 401  accacaaccccattgtcgttgatcgtctcgacggcatcagcaaactccttgaaatccttc 460
            ||||| ||||||||||| ||||| || || || |||||||| ||||||||||||||||||
Sbjct: 1657 accacgaccccattgtccttgatggtttcaacagcatcagcgaactccttgaaatccttc 1598

                                                                        
Query: 461  acgctggttgcgagtatctcttcacgcctttgctggcgttcctcctcagtgatgcccaac 520
              ||| ||||| |||||||||||||| ||||||||||||||||| || |||||||||| |
Sbjct: 1597 gggcttgttgctagtatctcttcacgtctttgctggcgttcctcatccgtgatgcccagc 1538

                                                                        
Query: 521  aaataccgcatcagactgctgtaacctttagcatctggtagctgataggaatcaacatcc 580
            ||||| | ||| || ||||||||||||||||||||||||||||| ||||  |||||||| 
Sbjct: 1537 aaatatctcattaggctgctgtaacctttagcatctggtagctggtaggcgtcaacatcg 1478

                                                     
Query: 581  cctatggtgccaataatagcttttgtgagagcatcatcatc 621
            |||||||| |||||||||||||||||||| |||||||||||
Sbjct: 1477 cctatggttccaataatagcttttgtgagtgcatcatcatc 1437
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  121 bits (61), Expect = 3e-24
 Identities = 124/145 (85%)
 Strand = Plus / Minus

                                                                            
Query: 322      tcacaggcacttcttgatgtctgaaaataacgacttctctttgtttgctgcctcgacgtc 381
                ||||||||||||||||| ||||||||| || |  || || ||||||||||| ||||||||
Sbjct: 32087614 tcacaggcacttcttgacgtctgaaaacaagggattttccttgtttgctgcttcgacgtc 32087555

                                                                            
Query: 382      gtcaggcgatgctacagccaccacaaccccattgtcgttgatcgtctcgacggcatcagc 441
                 ||||| ||||| || || ||||| || || |||||||| || || ||||| ||||||||
Sbjct: 32087554 ctcaggtgatgcaacggcaaccacgacaccgttgtcgttaattgtttcgacagcatcagc 32087495

                                         
Query: 442      aaactccttgaaatccttcacgctg 466
                |||||||||||||||||||| ||||
Sbjct: 32087494 aaactccttgaaatccttcaagctg 32087470



 Score =  115 bits (58), Expect = 2e-22
 Identities = 79/86 (91%)
 Strand = Plus / Minus

                                                                            
Query: 536      ctgctgtaacctttagcatctggtagctgataggaatcaacatcccctatggtgccaata 595
                ||||||||||||||||||||||| ||||| ||||||||||| || |||||||| ||||||
Sbjct: 32086972 ctgctgtaacctttagcatctggcagctggtaggaatcaacgtcacctatggtaccaata 32086913

                                          
Query: 596      atagcttttgtgagagcatcatcatc 621
                |||||||||||||||  |||||||||
Sbjct: 32086912 atagcttttgtgagacaatcatcatc 32086887



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                            
Query: 464      ctggttgcgagtatctcttcacgcctttgctggcgttcctcctcagtgatgcccaacaaa 523
                |||||||  |||||||||||||| |||||||||||||||||| | |||||||||| ||| 
Sbjct: 32087370 ctggttgatagtatctcttcacgtctttgctggcgttcctccaccgtgatgcccagcaag 32087311

                               
Query: 524      taccgcatcagactg 538
                || ||||| ||||||
Sbjct: 32087310 tatcgcattagactg 32087296
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>dbj|AP005002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0486G03
          Length = 146713

 Score =  121 bits (61), Expect = 3e-24
 Identities = 124/145 (85%)
 Strand = Plus / Minus

                                                                         
Query: 322   tcacaggcacttcttgatgtctgaaaataacgacttctctttgtttgctgcctcgacgtc 381
             ||||||||||||||||| ||||||||| || |  || || ||||||||||| ||||||||
Sbjct: 24270 tcacaggcacttcttgacgtctgaaaacaagggattttccttgtttgctgcttcgacgtc 24211

                                                                         
Query: 382   gtcaggcgatgctacagccaccacaaccccattgtcgttgatcgtctcgacggcatcagc 441
              ||||| ||||| || || ||||| || || |||||||| || || ||||| ||||||||
Sbjct: 24210 ctcaggtgatgcaacggcaaccacgacaccgttgtcgttaattgtttcgacagcatcagc 24151

                                      
Query: 442   aaactccttgaaatccttcacgctg 466
             |||||||||||||||||||| ||||
Sbjct: 24150 aaactccttgaaatccttcaagctg 24126



 Score =  115 bits (58), Expect = 2e-22
 Identities = 79/86 (91%)
 Strand = Plus / Minus

                                                                         
Query: 536   ctgctgtaacctttagcatctggtagctgataggaatcaacatcccctatggtgccaata 595
             ||||||||||||||||||||||| ||||| ||||||||||| || |||||||| ||||||
Sbjct: 23628 ctgctgtaacctttagcatctggcagctggtaggaatcaacgtcacctatggtaccaata 23569

                                       
Query: 596   atagcttttgtgagagcatcatcatc 621
             |||||||||||||||  |||||||||
Sbjct: 23568 atagcttttgtgagacaatcatcatc 23543



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                         
Query: 464   ctggttgcgagtatctcttcacgcctttgctggcgttcctcctcagtgatgcccaacaaa 523
             |||||||  |||||||||||||| |||||||||||||||||| | |||||||||| ||| 
Sbjct: 24026 ctggttgatagtatctcttcacgtctttgctggcgttcctccaccgtgatgcccagcaag 23967

                            
Query: 524   taccgcatcagactg 538
             || ||||| ||||||
Sbjct: 23966 tatcgcattagactg 23952
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>ref|NM_112804.3| Arabidopsis thaliana ATPREP1/ATZNMP; metalloendopeptidase AT3G19170
            (ATPREP1/ATZNMP) mRNA, complete cds
          Length = 3466

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                        
Query: 535  actgctgtaacctttagcatctggtagctgataggaatcaacatcccctatggtgccaat 594
            |||||| |||||||| ||||| ||||  || || ||||||||||| || |||||||||||
Sbjct: 3096 actgctataacctttggcatcaggtaattggtatgaatcaacatcaccgatggtgccaat 3037

                           
Query: 595  aatagcttttgtgag 609
            ||||||||| |||||
Sbjct: 3036 aatagctttagtgag 3022
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>gb|AY091051.1| Arabidopsis thaliana putative metalloprotease (At3g19170) mRNA,
            complete cds
          Length = 3475

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                        
Query: 535  actgctgtaacctttagcatctggtagctgataggaatcaacatcccctatggtgccaat 594
            |||||| |||||||| ||||| ||||  || || ||||||||||| || |||||||||||
Sbjct: 3094 actgctataacctttggcatcaggtaattggtatgaatcaacatcaccgatggtgccaat 3035

                           
Query: 595  aatagcttttgtgag 609
            ||||||||| |||||
Sbjct: 3034 aatagctttagtgag 3020
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>gb|AY090240.1| Arabidopsis thaliana AT3g19170/MVI11_8 mRNA, complete cds
          Length = 3463

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                        
Query: 535  actgctgtaacctttagcatctggtagctgataggaatcaacatcccctatggtgccaat 594
            |||||| |||||||| ||||| ||||  || || ||||||||||| || |||||||||||
Sbjct: 3096 actgctataacctttggcatcaggtaattggtatgaatcaacatcaccgatggtgccaat 3037

                           
Query: 595  aatagcttttgtgag 609
            ||||||||| |||||
Sbjct: 3036 aatagctttagtgag 3022
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>gb|BT006362.1| Arabidopsis thaliana At3g19170/MVI11_8 gene, complete cds
          Length = 3243

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                        
Query: 535  actgctgtaacctttagcatctggtagctgataggaatcaacatcccctatggtgccaat 594
            |||||| |||||||| ||||| ||||  || || ||||||||||| || |||||||||||
Sbjct: 3030 actgctataacctttggcatcaggtaattggtatgaatcaacatcaccgatggtgccaat 2971

                           
Query: 595  aatagcttttgtgag 609
            ||||||||| |||||
Sbjct: 2970 aatagctttagtgag 2956
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>gb|BT002372.1| Arabidopsis thaliana clone U19043 putative metalloprotease
            (At3g19170) mRNA, complete cds
          Length = 3274

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                        
Query: 535  actgctgtaacctttagcatctggtagctgataggaatcaacatcccctatggtgccaat 594
            |||||| |||||||| ||||| ||||  || || ||||||||||| || |||||||||||
Sbjct: 3030 actgctataacctttggcatcaggtaattggtatgaatcaacatcaccgatggtgccaat 2971

                           
Query: 595  aatagcttttgtgag 609
            ||||||||| |||||
Sbjct: 2970 aatagctttagtgag 2956
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>dbj|AP000419.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVI11
          Length = 81875

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                         
Query: 536   ctgctgtaacctttagcatctggtagctgataggaatcaacatcccctatggtgccaata 595
             ||||| |||||||| ||||| ||||  || || ||||||||||| || ||||||||||||
Sbjct: 21068 ctgctataacctttggcatcaggtaattggtatgaatcaacatcaccgatggtgccaata 21127

                           
Query: 596   atagcttttgtgag 609
             |||||||| |||||
Sbjct: 21128 atagctttagtgag 21141
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>emb|AL589862.28| Human DNA sequence from clone GS1-165F21 on chromosome 10 Contains the 5'
              end of the PAX2 gene for paired box gene 2 and fifteen CpG
              islands, complete sequence
          Length = 187101

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 214    tacagcgccagaccattcttctt 236
              |||||||||||||||||||||||
Sbjct: 139014 tacagcgccagaccattcttctt 138992
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>gb|AF326573.1| Dengue virus type 4 strain 814669, complete genome
          Length = 10649

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6364 gcaaactccttgaaatccttca 6343
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>gb|AY243469.1| Chimeric Dengue virus vector p4(Delta30)-D2-CME, complete sequence
          Length = 15237

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6362 gcaaactccttgaaatccttca 6341
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>gb|AY243468.1| Chimeric Dengue virus vector p4-D2-CME, complete sequence
          Length = 15268

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6362 gcaaactccttgaaatccttca 6341
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>gb|AY243467.1| Chimeric Dengue virus vector p4(Delta30)-D2-ME, complete sequence
          Length = 15239

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6364 gcaaactccttgaaatccttca 6343
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>gb|AY243466.1| Chimeric Dengue virus vector p4-D2-ME, complete sequence
          Length = 15270

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6364 gcaaactccttgaaatccttca 6343
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>gb|AY376438.1| Dengue virus vector p4(Delta30), complete sequence
          Length = 15239

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6364 gcaaactccttgaaatccttca 6343
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>gb|AF375822.1|AF375822 Dengue virus type 4 recombinant clone 2A, complete genome
          Length = 10649

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6364 gcaaactccttgaaatccttca 6343
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>gb|AF326827.1| Dengue virus type 4 recombinant clone rDEN4del30, complete sequence
          Length = 10618

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6364 gcaaactccttgaaatccttca 6343
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>gb|AF326826.1| Dengue virus type 4 recombinant clone 2Adel30, complete sequence
          Length = 10618

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6364 gcaaactccttgaaatccttca 6343
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>gb|AF326825.1| Dengue virus type 4 recombinant clone rDEN4, complete sequence
          Length = 10649

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6364 gcaaactccttgaaatccttca 6343
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>gb|AF289029.1|AF289029 dengue virus type 4 China Guangzhou B5 strain genomic RNA,complete
            cds
          Length = 10665

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6364 gcaaactccttgaaatccttca 6343
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>gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complete sequence
          Length = 87248

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 16    acagcagcttggcgtacaaccgtctt 41
             ||||||||||||| ||||||||||||
Sbjct: 13338 acagcagcttggcttacaaccgtctt 13313
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>gb|AY947539.1| Dengue virus type 4 strain H241, complete genome
          Length = 10643

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6356 gcaaactccttgaaatccttca 6335
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>gb|M14931.2|DENSTRA Dengue virus type 4 polyprotein precursor, gene, complete cds
          Length = 10648

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6364 gcaaactccttgaaatccttca 6343
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>gb|AY776330.1| Dengue virus type 4 strain Taiwan-2K0713 polyprotein gene, complete
            cds
          Length = 10353

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6341 gcaaactccttgaaatccttca 6320
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>gb|AY618993.1| Dengue virus type 4 strain ThD4_0734_00, complete genome
          Length = 10653

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6365 gcaaactccttgaaatccttca 6344
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>gb|AY618992.1| Dengue virus type 4 strain ThD4_0485_01, complete genome
          Length = 10649

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6364 gcaaactccttgaaatccttca 6343
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>gb|AY618991.1| Dengue virus type 4 strain ThD4_0087_77, complete genome
          Length = 10650

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6364 gcaaactccttgaaatccttca 6343
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>gb|AY618990.1| Dengue virus type 4 strain ThD4_0348_91, complete genome
          Length = 10650

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6364 gcaaactccttgaaatccttca 6343
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>gb|AY858050.1| Dengue virus type 4 strain SW38i polyprotein gene, partial cds
          Length = 10516

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6253 gcaaactccttgaaatccttca 6232
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>gb|AY858049.1| Dengue virus type 4 strain SW36i polyprotein gene, partial cds
          Length = 10114

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 5851 gcaaactccttgaaatccttca 5830
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>gb|AY656168.1| Chimeric dengue virus vector p4(delta30)-D3L-ME, complete sequence
          Length = 15256

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6381 gcaaactccttgaaatccttca 6360
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>gb|AY656167.1| Chimeric dengue virus vector p4-D3L-ME, complete sequence
          Length = 15287

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6381 gcaaactccttgaaatccttca 6360
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>gb|AY648301.1| Dengue virus type 4 vector p4, complete sequence
          Length = 15270

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 440  gcaaactccttgaaatccttca 461
            ||||||||||||||||||||||
Sbjct: 6364 gcaaactccttgaaatccttca 6343
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>gb|AC115834.8| Mus musculus chromosome 3, clone RP24-159L1, complete sequence
          Length = 175998

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 354    acttctctttgtttgctgcct 374
              |||||||||||||||||||||
Sbjct: 101268 acttctctttgtttgctgcct 101248
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>emb|Z81036.1|CEC16C2 Caenorhabditis elegans Cosmid C16C2, complete sequence
          Length = 21917

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 331   cttcttgatgtctgaaaataa 351
             |||||||||||||||||||||
Sbjct: 15091 cttcttgatgtctgaaaataa 15111
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>emb|Z99119.2|BSUB0016 Bacillus subtilis complete genome (section 16 of 21): from 3013458 to
            3213379
          Length = 199922

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 339  tgtctgaaaataacgacttct 359
            |||||||||||||||||||||
Sbjct: 2059 tgtctgaaaataacgacttct 2039
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>emb|X92428.1|ZMHOX1BGN Z.mays mRNA for Hox1b protein
          Length = 2790

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 221  ccagaccattcttcttcatca 241
            |||||||||||||||||||||
Sbjct: 1632 ccagaccattcttcttcatca 1612
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>emb|AL731817.11| Mouse DNA sequence from clone RP23-3J16 on chromosome 11 Contains a
             novel gene and the 3' end of a novel gene, complete
             sequence
          Length = 103582

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 244   gaagcaaaactctgaagaacc 264
             |||||||||||||||||||||
Sbjct: 23966 gaagcaaaactctgaagaacc 23986
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>gb|AC005375.4|AC005375 Homo sapiens chromosome 17, clone hRPK.388_F_14, complete sequence
          Length = 149030

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 121   taattatttcccctaaaaatg 141
             |||||||||||||||||||||
Sbjct: 90915 taattatttcccctaaaaatg 90895
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>gb|L17320.1|BACACKA Bacillus subtilis acetate kinase (ackA) gene, complete cds
          Length = 1951

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 339 tgtctgaaaataacgacttct 359
           |||||||||||||||||||||
Sbjct: 519 tgtctgaaaataacgacttct 539
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>gb|AF008220.1|AF008220 Bacillus subtilis rrnB-dnaB genomic region
          Length = 220060

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 339    tgtctgaaaataacgacttct 359
              |||||||||||||||||||||
Sbjct: 162648 tgtctgaaaataacgacttct 162668
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>ref|NM_152884.2| Danio rerio caspase b (caspb), mRNA
          Length = 1812

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 aagcaaaactctgaagaacc 264
           ||||||||||||||||||||
Sbjct: 329 aagcaaaactctgaagaacc 348
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>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome
          Length = 1827111

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 12     cctaacagcagcttggcgtacaac 35
              ||||||||| ||||||||||||||
Sbjct: 609609 cctaacagctgcttggcgtacaac 609632
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>gb|AC132339.3| Mus musculus BAC clone RP24-165O21 from chromosome 5, complete sequence
          Length = 152574

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 502    ctcctcagtgatgcccaaca 521
              ||||||||||||||||||||
Sbjct: 113551 ctcctcagtgatgcccaaca 113570
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 415     gtcgttgatcgtctcgacggcatcagcaaact 446
               |||||| || ||||||||| ||||||||||||
Sbjct: 3791993 gtcgttcattgtctcgacgccatcagcaaact 3791962
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>gb|AC091726.2| Gallus gallus clone WAG-126P17, complete sequence
          Length = 129285

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    tgagcactgattgcagaggg 64
             ||||||||||||||||||||
Sbjct: 58108 tgagcactgattgcagaggg 58127
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>emb|AL078612.8|HSDJ65P5 Human DNA sequence from clone RP1-65P5 on chromosome 11p13 Contains the
             RCN1 gene for EF-hand calcium binding domain protein
             reticulocalbin 1, a seudogene similar to part of EIF4A
             (Eukaryotic Initiation Factor 4A), ESTs, STSs, GSSs and a
             putative CpG island, complete sequence
          Length = 94497

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   cacttcttgatgtctgaaaa 348
             ||||||||||||||||||||
Sbjct: 46257 cacttcttgatgtctgaaaa 46276
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>emb|AL021069.1|HS970D1 Human DNA sequence from clone RP5-970D1 on chromosome 1q24 Contains the
             3' end of a variant of the gene for expressed in
             hematopoietic cells (heart, liver) (HLL), complete
             sequence
          Length = 100496

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   aactaattatttcccctaaa 137
             ||||||||||||||||||||
Sbjct: 64950 aactaattatttcccctaaa 64969
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>emb|BX469930.13| Zebrafish DNA sequence from clone CH211-114L13 in linkage group 1,
             complete sequence
          Length = 183380

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   aagcaaaactctgaagaacc 264
             ||||||||||||||||||||
Sbjct: 49785 aagcaaaactctgaagaacc 49804
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>gb|DQ022755.1| Danio rerio caspase b (caspb) mRNA, complete cds
          Length = 1215

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 aagcaaaactctgaagaacc 264
           ||||||||||||||||||||
Sbjct: 292 aagcaaaactctgaagaacc 311
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>gb|BC095000.1| Danio rerio caspase b, mRNA (cDNA clone MGC:109807 IMAGE:7255283),
           complete cds
          Length = 1812

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 aagcaaaactctgaagaacc 264
           ||||||||||||||||||||
Sbjct: 329 aagcaaaactctgaagaacc 348
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>gb|AF327410.1|AF327410 Danio rerio Caspy2 (caspy2) mRNA, complete cds
          Length = 1215

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 aagcaaaactctgaagaacc 264
           ||||||||||||||||||||
Sbjct: 292 aagcaaaactctgaagaacc 311
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>gb|BC094169.1| Xenopus laevis cDNA clone MGC:115330 IMAGE:6948906, complete cds
          Length = 4388

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 497  cgttcctcctcagtgatgcc 516
            ||||||||||||||||||||
Sbjct: 1179 cgttcctcctcagtgatgcc 1160
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>gb|AC129207.4| Mus musculus chromosome 5 clone RP24-280N5, complete sequence
          Length = 165994

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 502    ctcctcagtgatgcccaaca 521
              ||||||||||||||||||||
Sbjct: 117889 ctcctcagtgatgcccaaca 117870
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>emb|Z34802.1|CEM88 Caenorhabditis elegans Cosmid M88, complete sequence
          Length = 32723

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 332  ttcttgatgtctgaaaataa 351
            ||||||||||||||||||||
Sbjct: 8409 ttcttgatgtctgaaaataa 8428


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,629,921
Number of Sequences: 3902068
Number of extensions: 5629921
Number of successful extensions: 113031
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112856
Number of HSP's gapped (non-prelim): 175
length of query: 628
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 605
effective length of database: 17,143,297,704
effective search space: 10371695110920
effective search space used: 10371695110920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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