ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61f22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK073054.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 3e-36
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 88 4e-14
4emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb... 88 4e-14
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 80 1e-11
7emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa... 80 1e-11
8gb|AY927891.1| Helicolenus sp. PJS-2005 isolate 23Tasmania contr... 44 0.56
9dbj|AK222432.1| Ciona intestinalis mRNA for zinc finger protein,... 42 2.2
10gb|AC135626.4| Homo sapiens chromosome 15, clone RP11-354B3, com... 42 2.2
11dbj|AK114118.1| Ciona intestinalis cDNA, clone:cicl030a08, full ... 42 2.2
12gb|AC145851.3| Dasypus novemcinctus clone VMRC5-509I16, complete... 40 8.8
13gb|AC167976.4| Mus musculus BAC clone RP23-167L5 from chromosome... 40 8.8
14gb|BT013301.1| Lycopersicon esculentum clone 134935F, mRNA sequence 40 8.8
15ref|XM_806204.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 8.8
16emb|AL139082.18| Human DNA sequence from clone RP11-248G5 on chr... 40 8.8
17gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 40 8.8
18gb|AY899923.1| Salmonella typhimurium isolate L4 plasmid CMY-2 b... 40 8.8
19gb|AC106806.2| Homo sapiens chromosome 5 clone RP11-510I6, compl... 40 8.8
20dbj|AB178966.1| Macaca fascicularis testis cDNA clone: QtsA-1033... 40 8.8
21gb|AC092393.3| Homo sapiens chromosome 1 clone RP4-736I12, compl... 40 8.8
22ref|NM_069897.2| Caenorhabditis elegans Dynein Light Chain famil... 40 8.8
23dbj|AB086650.2| Mus musculus gene for polyA polymerase, complete... 40 8.8
24gb|AE014848.1| Plasmodium falciparum 3D7 chromosome 12, section ... 40 8.8
25emb|Z68507.1|CEM18 Caenorhabditis elegans Cosmid M18, complete s... 40 8.8
26emb|BX296559.14| Zebrafish DNA sequence from clone CH211-285F17 ... 40 8.8
27gb|AY509004.1| Salmonella enterica subsp. enterica serovar Chole... 40 8.8
28gb|AC140350.3| Mus musculus BAC clone RP24-251F16 from 3, comple... 40 8.8
29gb|AC158526.3| Mus musculus BAC clone RP23-288A9 from chromosome... 40 8.8

>dbj|AK073054.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033005M04, full
           insert sequence
          Length = 1002

 Score =  161 bits (81), Expect = 3e-36
 Identities = 246/301 (81%)
 Strand = Plus / Minus

                                                                       
Query: 288 aggaaactgaccaatgtgatcctgggggcaacacctgtgcccgaacgcttcttgattgtt 347
           ||||| || ||||||||||| |||| || | |||||||||| || | ||||||||||| |
Sbjct: 840 aggaagctaaccaatgtgattctggagggagcacctgtgcctgatctcttcttgattgct 781

                                                                       
Query: 348 gttgtcttccacggctttccatcttgcacagtacccgtggtcgtcgacgttacgttgtag 407
           || || || ||| |||||||||||   || |||  |||||| || || | ||| || |||
Sbjct: 780 gtcgttttacacagctttccatctcttacggtagtcgtggttgtagatgatacattatag 721

                                                                       
Query: 408 aactcacacacaccatgtaatagcaacctctgaaatgggtcctggacattcaacacaagc 467
           ||||| || ||||| || || ||||| |||||||||||||||||||||||||  ||||||
Sbjct: 720 aactcgcatacaccgtgcaaaagcaatctctgaaatgggtcctggacattcagtacaagc 661

                                                                       
Query: 468 acatctttatcaatattgtcttcaatgaaggccctaatccgctcttcatatatttcaagc 527
           | ||||||| || || ||||||| ||||||| |||||  || ||||| ||||||||||| 
Sbjct: 660 atatctttaccactagtgtcttcgatgaaggtcctaactcgttcttcgtatatttcaaga 601

                                                                       
Query: 528 agttcaggtaggaagtttctcttcatagcttctcttgtttggcaatctatacgacgccaa 587
           || || || ||||| |||||||| || |||||||||||||| | ||||||| || |||||
Sbjct: 600 agatctgggaggaaatttctctttatggcttctcttgtttgacgatctatatgatgccaa 541

            
Query: 588 g 588
           |
Sbjct: 540 g 540



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                           
Query: 410     ctcacacacaccatgtaatagcaacctctgaaatgggtcctggacattcaacacaagcac 469
               |||||| |||||||| |  |||||||||||||| || |||||||||||||  ||||||||
Sbjct: 2173555 ctcacatacaccatgcagaagcaacctctgaaacggatcctggacattcagtacaagcac 2173496

                                                   
Query: 470     atctttatcaatattgtcttcaatgaaggccctaat 505
               ||||||| || ||   ||||||||||||||||||||
Sbjct: 2173495 atctttaccactagcatcttcaatgaaggccctaat 2173460



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                           
Query: 513     tcatatatttcaagcagttcaggtaggaagtttctcttcatagcttctcttgtttggcaa 572
               |||||||| |||||||| || || ||||| |||||||| || |||||||||||||||| |
Sbjct: 2172226 tcatatatgtcaagcagatctgggaggaaatttctctttatggcttctcttgtttggcga 2172167

                                   
Query: 573     tctatacgacgccaagcatt 592
               ||||||||| ||||||||||
Sbjct: 2172166 tctatacgatgccaagcatt 2172147



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 337     tcttgattgttgttgtcttccacggctttccatct 371
               |||| |||||||| ||||||||| |||||||||||
Sbjct: 2173711 tcttaattgttgtcgtcttccacagctttccatct 2173677



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                           
Query: 410     ctcacacacaccatgtaatagcaacctctgaaatgggtcctggacattcaacacaagcac 469
               |||||| |||||||| |  |||||||||||||| || |||||||||||||  ||||||||
Sbjct: 2173499 ctcacatacaccatgcagaagcaacctctgaaacggatcctggacattcagtacaagcac 2173440

                                                   
Query: 470     atctttatcaatattgtcttcaatgaaggccctaat 505
               ||||||| || ||   ||||||||||||||||||||
Sbjct: 2173439 atctttaccactagcatcttcaatgaaggccctaat 2173404



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                           
Query: 513     tcatatatttcaagcagttcaggtaggaagtttctcttcatagcttctcttgtttggcaa 572
               |||||||| |||||||| || || ||||| |||||||| || |||||||||||||||| |
Sbjct: 2172170 tcatatatgtcaagcagatctgggaggaaatttctctttatggcttctcttgtttggcga 2172111

                                   
Query: 573     tctatacgacgccaagcatt 592
               ||||||||| ||||||||||
Sbjct: 2172110 tctatacgatgccaagcatt 2172091



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 337     tcttgattgttgttgtcttccacggctttccatct 371
               |||| |||||||| ||||||||| |||||||||||
Sbjct: 2173655 tcttaattgttgtcgtcttccacagctttccatct 2173621



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>emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb0077O07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132703

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                         
Query: 410   ctcacacacaccatgtaatagcaacctctgaaatgggtcctggacattcaacacaagcac 469
             |||||| |||||||| |  |||||||||||||| || |||||||||||||  ||||||||
Sbjct: 55779 ctcacatacaccatgcagaagcaacctctgaaacggatcctggacattcagtacaagcac 55720

                                                 
Query: 470   atctttatcaatattgtcttcaatgaaggccctaat 505
             ||||||| || ||   ||||||||||||||||||||
Sbjct: 55719 atctttaccactagcatcttcaatgaaggccctaat 55684



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                         
Query: 513   tcatatatttcaagcagttcaggtaggaagtttctcttcatagcttctcttgtttggcaa 572
             |||||||| |||||||| || || ||||| |||||||| || |||||||||||||||| |
Sbjct: 54450 tcatatatgtcaagcagatctgggaggaaatttctctttatggcttctcttgtttggcga 54391

                                 
Query: 573   tctatacgacgccaagcatt 592
             ||||||||| ||||||||||
Sbjct: 54390 tctatacgatgccaagcatt 54371



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 337   tcttgattgttgttgtcttccacggctttccatct 371
             |||| |||||||| ||||||||| |||||||||||
Sbjct: 55935 tcttaattgttgtcgtcttccacagctttccatct 55901



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                           
Query: 429     agcaacctctgaaatgggtcctggacattcaacacaagcacatctttatcaatattgtct 488
               ||||| |||||||||||||||||||||||||  ||||||| ||||||| || || |||||
Sbjct: 2130489 agcaatctctgaaatgggtcctggacattcagtacaagcatatctttaccactagtgtct 2130430

                               
Query: 489     tcaatgaaggccctaa 504
               || ||||||| |||||
Sbjct: 2130429 tcgatgaaggtcctaa 2130414



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                           
Query: 511     cttcatatatttcaagcagttcaggtaggaagtttctcttcatagcttctcttgtttggc 570
               |||| ||||||||||| || || || ||||| |||||||| || |||||||||||||| |
Sbjct: 2129492 cttcgtatatttcaagaagatctgggaggaaatttctctttatggcttctcttgtttgac 2129433

                                 
Query: 571     aatctatacgacgccaag 588
                ||||||| || ||||||
Sbjct: 2129432 gatctatatgatgccaag 2129415



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 70/84 (83%)
 Strand = Plus / Minus

                                                                           
Query: 288     aggaaactgaccaatgtgatcctgggggcaacacctgtgcccgaacgcttcttgattgtt 347
               ||||| || ||||||||||| |||| || | |||||||||| || | ||||||||||| |
Sbjct: 2130716 aggaagctaaccaatgtgattctggagggagcacctgtgcctgatctcttcttgattgct 2130657

                                       
Query: 348     gttgtcttccacggctttccatct 371
               || || || ||| |||||||||||
Sbjct: 2130656 gtcgttttacacagctttccatct 2130633



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                           
Query: 429     agcaacctctgaaatgggtcctggacattcaacacaagcacatctttatcaatattgtct 488
               ||||| |||||||||||||||||||||||||  ||||||| ||||||| || || |||||
Sbjct: 2138270 agcaatctctgaaatgggtcctggacattcagtacaagcatatctttaccactagtgtct 2138211

                               
Query: 489     tcaatgaaggccctaa 504
               || ||||||| |||||
Sbjct: 2138210 tcgatgaaggtcctaa 2138195



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                           
Query: 511     cttcatatatttcaagcagttcaggtaggaagtttctcttcatagcttctcttgtttggc 570
               |||| ||||||||||| || || || ||||| |||||||| || |||||||||||||| |
Sbjct: 2137273 cttcgtatatttcaagaagatctgggaggaaatttctctttatggcttctcttgtttgac 2137214

                                 
Query: 571     aatctatacgacgccaag 588
                ||||||| || ||||||
Sbjct: 2137213 gatctatatgatgccaag 2137196



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 70/84 (83%)
 Strand = Plus / Minus

                                                                           
Query: 288     aggaaactgaccaatgtgatcctgggggcaacacctgtgcccgaacgcttcttgattgtt 347
               ||||| || ||||||||||| |||| || | |||||||||| || | ||||||||||| |
Sbjct: 2138497 aggaagctaaccaatgtgattctggagggagcacctgtgcctgatctcttcttgattgct 2138438

                                       
Query: 348     gttgtcttccacggctttccatct 371
               || || || ||| |||||||||||
Sbjct: 2138437 gtcgttttacacagctttccatct 2138414



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>emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 125593

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                         
Query: 429   agcaacctctgaaatgggtcctggacattcaacacaagcacatctttatcaatattgtct 488
             ||||| |||||||||||||||||||||||||  ||||||| ||||||| || || |||||
Sbjct: 27183 agcaatctctgaaatgggtcctggacattcagtacaagcatatctttaccactagtgtct 27124

                             
Query: 489   tcaatgaaggccctaa 504
             || ||||||| |||||
Sbjct: 27123 tcgatgaaggtcctaa 27108



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                         
Query: 511   cttcatatatttcaagcagttcaggtaggaagtttctcttcatagcttctcttgtttggc 570
             |||| ||||||||||| || || || ||||| |||||||| || |||||||||||||| |
Sbjct: 26186 cttcgtatatttcaagaagatctgggaggaaatttctctttatggcttctcttgtttgac 26127

                               
Query: 571   aatctatacgacgccaag 588
              ||||||| || ||||||
Sbjct: 26126 gatctatatgatgccaag 26109



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 70/84 (83%)
 Strand = Plus / Minus

                                                                         
Query: 288   aggaaactgaccaatgtgatcctgggggcaacacctgtgcccgaacgcttcttgattgtt 347
             ||||| || ||||||||||| |||| || | |||||||||| || | ||||||||||| |
Sbjct: 27410 aggaagctaaccaatgtgattctggagggagcacctgtgcctgatctcttcttgattgct 27351

                                     
Query: 348   gttgtcttccacggctttccatct 371
             || || || ||| |||||||||||
Sbjct: 27350 gtcgttttacacagctttccatct 27327



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>gb|AY927891.1| Helicolenus sp. PJS-2005 isolate 23Tasmania control region gene,
           complete sequence; mitochondrial
          Length = 443

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 157 taagcaaaacctaaagaaacaa 178
           ||||||||||||||||||||||
Sbjct: 199 taagcaaaacctaaagaaacaa 220



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>dbj|AK222432.1| Ciona intestinalis mRNA for zinc finger protein, complete cds,
           clone: cibd006i17
          Length = 2104

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 509 ctcttcatatatttcaagcag 529
           |||||||||||||||||||||
Sbjct: 886 ctcttcatatatttcaagcag 866



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>gb|AC135626.4| Homo sapiens chromosome 15, clone RP11-354B3, complete sequence
          Length = 180684

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 168   taaagaaacaactttggcttc 188
             |||||||||||||||||||||
Sbjct: 72266 taaagaaacaactttggcttc 72246



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>dbj|AK114118.1| Ciona intestinalis cDNA, clone:cicl030a08, full insert sequence
          Length = 1573

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 509 ctcttcatatatttcaagcag 529
           |||||||||||||||||||||
Sbjct: 848 ctcttcatatatttcaagcag 828



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>gb|AC145851.3| Dasypus novemcinctus clone VMRC5-509I16, complete sequence
          Length = 123145

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 540   aagtttctcttcatagcttc 559
             ||||||||||||||||||||
Sbjct: 33460 aagtttctcttcatagcttc 33479



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>gb|AC167976.4| Mus musculus BAC clone RP23-167L5 from chromosome 3, complete sequence
          Length = 211791

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 599    aattaactcatcttcattca 618
              ||||||||||||||||||||
Sbjct: 183285 aattaactcatcttcattca 183266



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>gb|BT013301.1| Lycopersicon esculentum clone 134935F, mRNA sequence
          Length = 1166

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 401 gttgtagaactcacacacaccatg 424
           ||||||||||||||| ||||||||
Sbjct: 741 gttgtagaactcacaaacaccatg 718



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>ref|XM_806204.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053509991.29) partial mRNA
          Length = 1266

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 343  ttgttgttgtcttccacggc 362
            ||||||||||||||||||||
Sbjct: 1143 ttgttgttgtcttccacggc 1124



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>emb|AL139082.18| Human DNA sequence from clone RP11-248G5 on chromosome 13q14.3-21.1
             Contains the 5' end of the ATP7B gene for ATPase, Cu++
             transporting, beta polypeptide (Wilson disease), four
             novel genes,  the NEK3 gene for NIMA (never in mitosis
             gene a)-related kinase 3, the 3' end of a novel gene and
             five CpG islands, complete sequence
          Length = 187691

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   ctttggcttctcccaggagc 198
             ||||||||||||||||||||
Sbjct: 90181 ctttggcttctcccaggagc 90162



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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    taaagaaacaactttggctt 187
              ||||||||||||||||||||
Sbjct: 655336 taaagaaacaactttggctt 655317



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>gb|AY899923.1| Salmonella typhimurium isolate L4 plasmid CMY-2 beta-lactamase
            (blaCMY-2), Blc (blc), SugE (sugE), and FinQ (finQ)
            genes, complete cds; and TrbA (trbA) gene, partial cds
          Length = 5429

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 135  taatttacatatgtgtacatccta 158
            ||||||| ||||||||||||||||
Sbjct: 3962 taatttagatatgtgtacatccta 3939



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>gb|AC106806.2| Homo sapiens chromosome 5 clone RP11-510I6, complete sequence
          Length = 162485

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 473   tttatcaatattgtcttcaa 492
             ||||||||||||||||||||
Sbjct: 86297 tttatcaatattgtcttcaa 86316



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>dbj|AB178966.1| Macaca fascicularis testis cDNA clone: QtsA-10335, similar to human
            Nedd4 binding protein 2 (N4BP2), mRNA, RefSeq:
            NM_018177.2
          Length = 2681

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                        
Query: 605  ctcatcttcattcataagattcttctgc 632
            ||||||||||||||||| ||||||||||
Sbjct: 1527 ctcatcttcattcataa-attcttctgc 1501



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>gb|AC092393.3| Homo sapiens chromosome 1 clone RP4-736I12, complete sequence
          Length = 90526

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   agaaacaactttggcttctc 190
             ||||||||||||||||||||
Sbjct: 22764 agaaacaactttggcttctc 22745



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>ref|NM_069897.2| Caenorhabditis elegans Dynein Light Chain family member (dlc-2)
           (dlc-2) mRNA, complete cds
          Length = 459

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 467 cacatctttatcaatattgt 486
           ||||||||||||||||||||
Sbjct: 191 cacatctttatcaatattgt 172



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>dbj|AB086650.2| Mus musculus gene for polyA polymerase, complete cds
          Length = 15896

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 404  gtagaactcacacacaccat 423
            ||||||||||||||||||||
Sbjct: 5951 gtagaactcacacacaccat 5970



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>gb|AE014848.1| Plasmodium falciparum 3D7 chromosome 12, section 5 of 9 of the complete
             sequence
          Length = 250707

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 601   ttaactcatcttcattcata 620
             ||||||||||||||||||||
Sbjct: 18792 ttaactcatcttcattcata 18811



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>emb|Z68507.1|CEM18 Caenorhabditis elegans Cosmid M18, complete sequence
          Length = 26542

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 467   cacatctttatcaatattgt 486
             ||||||||||||||||||||
Sbjct: 11344 cacatctttatcaatattgt 11363



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>emb|BX296559.14| Zebrafish DNA sequence from clone CH211-285F17 in linkage group 24,
            complete sequence
          Length = 171695

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 335  cttcttgattgttgttgtct 354
            ||||||||||||||||||||
Sbjct: 8971 cttcttgattgttgttgtct 8952



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>gb|AY509004.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
             plasmid pSC138, complete sequence
          Length = 138742

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 135   taatttacatatgtgtacatccta 158
             ||||||| ||||||||||||||||
Sbjct: 73159 taatttagatatgtgtacatccta 73136



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>gb|AC140350.3| Mus musculus BAC clone RP24-251F16 from 3, complete sequence
          Length = 162787

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 599   aattaactcatcttcattca 618
             ||||||||||||||||||||
Sbjct: 22917 aattaactcatcttcattca 22898



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>gb|AC158526.3| Mus musculus BAC clone RP23-288A9 from chromosome 12, complete sequence
          Length = 236362

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 404   gtagaactcacacacaccat 423
             ||||||||||||||||||||
Sbjct: 26811 gtagaactcacacacaccat 26792


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,393,120
Number of Sequences: 3902068
Number of extensions: 6393120
Number of successful extensions: 121715
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 121513
Number of HSP's gapped (non-prelim): 202
length of query: 645
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 622
effective length of database: 17,143,297,704
effective search space: 10663131171888
effective search space used: 10663131171888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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