Clone Name | rbah61f22 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK073054.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033005M04, full insert sequence Length = 1002 Score = 161 bits (81), Expect = 3e-36 Identities = 246/301 (81%) Strand = Plus / Minus Query: 288 aggaaactgaccaatgtgatcctgggggcaacacctgtgcccgaacgcttcttgattgtt 347 ||||| || ||||||||||| |||| || | |||||||||| || | ||||||||||| | Sbjct: 840 aggaagctaaccaatgtgattctggagggagcacctgtgcctgatctcttcttgattgct 781 Query: 348 gttgtcttccacggctttccatcttgcacagtacccgtggtcgtcgacgttacgttgtag 407 || || || ||| ||||||||||| || ||| |||||| || || | ||| || ||| Sbjct: 780 gtcgttttacacagctttccatctcttacggtagtcgtggttgtagatgatacattatag 721 Query: 408 aactcacacacaccatgtaatagcaacctctgaaatgggtcctggacattcaacacaagc 467 ||||| || ||||| || || ||||| ||||||||||||||||||||||||| |||||| Sbjct: 720 aactcgcatacaccgtgcaaaagcaatctctgaaatgggtcctggacattcagtacaagc 661 Query: 468 acatctttatcaatattgtcttcaatgaaggccctaatccgctcttcatatatttcaagc 527 | ||||||| || || ||||||| ||||||| ||||| || ||||| ||||||||||| Sbjct: 660 atatctttaccactagtgtcttcgatgaaggtcctaactcgttcttcgtatatttcaaga 601 Query: 528 agttcaggtaggaagtttctcttcatagcttctcttgtttggcaatctatacgacgccaa 587 || || || ||||| |||||||| || |||||||||||||| | ||||||| || ||||| Sbjct: 600 agatctgggaggaaatttctctttatggcttctcttgtttgacgatctatatgatgccaa 541 Query: 588 g 588 | Sbjct: 540 g 540
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 87.7 bits (44), Expect = 4e-14 Identities = 83/96 (86%) Strand = Plus / Minus Query: 410 ctcacacacaccatgtaatagcaacctctgaaatgggtcctggacattcaacacaagcac 469 |||||| |||||||| | |||||||||||||| || ||||||||||||| |||||||| Sbjct: 2173555 ctcacatacaccatgcagaagcaacctctgaaacggatcctggacattcagtacaagcac 2173496 Query: 470 atctttatcaatattgtcttcaatgaaggccctaat 505 ||||||| || || |||||||||||||||||||| Sbjct: 2173495 atctttaccactagcatcttcaatgaaggccctaat 2173460 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 513 tcatatatttcaagcagttcaggtaggaagtttctcttcatagcttctcttgtttggcaa 572 |||||||| |||||||| || || ||||| |||||||| || |||||||||||||||| | Sbjct: 2172226 tcatatatgtcaagcagatctgggaggaaatttctctttatggcttctcttgtttggcga 2172167 Query: 573 tctatacgacgccaagcatt 592 ||||||||| |||||||||| Sbjct: 2172166 tctatacgatgccaagcatt 2172147 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 337 tcttgattgttgttgtcttccacggctttccatct 371 |||| |||||||| ||||||||| ||||||||||| Sbjct: 2173711 tcttaattgttgtcgtcttccacagctttccatct 2173677
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 87.7 bits (44), Expect = 4e-14 Identities = 83/96 (86%) Strand = Plus / Minus Query: 410 ctcacacacaccatgtaatagcaacctctgaaatgggtcctggacattcaacacaagcac 469 |||||| |||||||| | |||||||||||||| || ||||||||||||| |||||||| Sbjct: 2173499 ctcacatacaccatgcagaagcaacctctgaaacggatcctggacattcagtacaagcac 2173440 Query: 470 atctttatcaatattgtcttcaatgaaggccctaat 505 ||||||| || || |||||||||||||||||||| Sbjct: 2173439 atctttaccactagcatcttcaatgaaggccctaat 2173404 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 513 tcatatatttcaagcagttcaggtaggaagtttctcttcatagcttctcttgtttggcaa 572 |||||||| |||||||| || || ||||| |||||||| || |||||||||||||||| | Sbjct: 2172170 tcatatatgtcaagcagatctgggaggaaatttctctttatggcttctcttgtttggcga 2172111 Query: 573 tctatacgacgccaagcatt 592 ||||||||| |||||||||| Sbjct: 2172110 tctatacgatgccaagcatt 2172091 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 337 tcttgattgttgttgtcttccacggctttccatct 371 |||| |||||||| ||||||||| ||||||||||| Sbjct: 2173655 tcttaattgttgtcgtcttccacagctttccatct 2173621
>emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb0077O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132703 Score = 87.7 bits (44), Expect = 4e-14 Identities = 83/96 (86%) Strand = Plus / Minus Query: 410 ctcacacacaccatgtaatagcaacctctgaaatgggtcctggacattcaacacaagcac 469 |||||| |||||||| | |||||||||||||| || ||||||||||||| |||||||| Sbjct: 55779 ctcacatacaccatgcagaagcaacctctgaaacggatcctggacattcagtacaagcac 55720 Query: 470 atctttatcaatattgtcttcaatgaaggccctaat 505 ||||||| || || |||||||||||||||||||| Sbjct: 55719 atctttaccactagcatcttcaatgaaggccctaat 55684 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 513 tcatatatttcaagcagttcaggtaggaagtttctcttcatagcttctcttgtttggcaa 572 |||||||| |||||||| || || ||||| |||||||| || |||||||||||||||| | Sbjct: 54450 tcatatatgtcaagcagatctgggaggaaatttctctttatggcttctcttgtttggcga 54391 Query: 573 tctatacgacgccaagcatt 592 ||||||||| |||||||||| Sbjct: 54390 tctatacgatgccaagcatt 54371 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 337 tcttgattgttgttgtcttccacggctttccatct 371 |||| |||||||| ||||||||| ||||||||||| Sbjct: 55935 tcttaattgttgtcgtcttccacagctttccatct 55901
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 79.8 bits (40), Expect = 1e-11 Identities = 67/76 (88%) Strand = Plus / Minus Query: 429 agcaacctctgaaatgggtcctggacattcaacacaagcacatctttatcaatattgtct 488 ||||| ||||||||||||||||||||||||| ||||||| ||||||| || || ||||| Sbjct: 2130489 agcaatctctgaaatgggtcctggacattcagtacaagcatatctttaccactagtgtct 2130430 Query: 489 tcaatgaaggccctaa 504 || ||||||| ||||| Sbjct: 2130429 tcgatgaaggtcctaa 2130414 Score = 60.0 bits (30), Expect = 9e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 511 cttcatatatttcaagcagttcaggtaggaagtttctcttcatagcttctcttgtttggc 570 |||| ||||||||||| || || || ||||| |||||||| || |||||||||||||| | Sbjct: 2129492 cttcgtatatttcaagaagatctgggaggaaatttctctttatggcttctcttgtttgac 2129433 Query: 571 aatctatacgacgccaag 588 ||||||| || |||||| Sbjct: 2129432 gatctatatgatgccaag 2129415 Score = 56.0 bits (28), Expect = 1e-04 Identities = 70/84 (83%) Strand = Plus / Minus Query: 288 aggaaactgaccaatgtgatcctgggggcaacacctgtgcccgaacgcttcttgattgtt 347 ||||| || ||||||||||| |||| || | |||||||||| || | ||||||||||| | Sbjct: 2130716 aggaagctaaccaatgtgattctggagggagcacctgtgcctgatctcttcttgattgct 2130657 Query: 348 gttgtcttccacggctttccatct 371 || || || ||| ||||||||||| Sbjct: 2130656 gtcgttttacacagctttccatct 2130633
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 79.8 bits (40), Expect = 1e-11 Identities = 67/76 (88%) Strand = Plus / Minus Query: 429 agcaacctctgaaatgggtcctggacattcaacacaagcacatctttatcaatattgtct 488 ||||| ||||||||||||||||||||||||| ||||||| ||||||| || || ||||| Sbjct: 2138270 agcaatctctgaaatgggtcctggacattcagtacaagcatatctttaccactagtgtct 2138211 Query: 489 tcaatgaaggccctaa 504 || ||||||| ||||| Sbjct: 2138210 tcgatgaaggtcctaa 2138195 Score = 60.0 bits (30), Expect = 9e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 511 cttcatatatttcaagcagttcaggtaggaagtttctcttcatagcttctcttgtttggc 570 |||| ||||||||||| || || || ||||| |||||||| || |||||||||||||| | Sbjct: 2137273 cttcgtatatttcaagaagatctgggaggaaatttctctttatggcttctcttgtttgac 2137214 Query: 571 aatctatacgacgccaag 588 ||||||| || |||||| Sbjct: 2137213 gatctatatgatgccaag 2137196 Score = 56.0 bits (28), Expect = 1e-04 Identities = 70/84 (83%) Strand = Plus / Minus Query: 288 aggaaactgaccaatgtgatcctgggggcaacacctgtgcccgaacgcttcttgattgtt 347 ||||| || ||||||||||| |||| || | |||||||||| || | ||||||||||| | Sbjct: 2138497 aggaagctaaccaatgtgattctggagggagcacctgtgcctgatctcttcttgattgct 2138438 Query: 348 gttgtcttccacggctttccatct 371 || || || ||| ||||||||||| Sbjct: 2138437 gtcgttttacacagctttccatct 2138414
>emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 125593 Score = 79.8 bits (40), Expect = 1e-11 Identities = 67/76 (88%) Strand = Plus / Minus Query: 429 agcaacctctgaaatgggtcctggacattcaacacaagcacatctttatcaatattgtct 488 ||||| ||||||||||||||||||||||||| ||||||| ||||||| || || ||||| Sbjct: 27183 agcaatctctgaaatgggtcctggacattcagtacaagcatatctttaccactagtgtct 27124 Query: 489 tcaatgaaggccctaa 504 || ||||||| ||||| Sbjct: 27123 tcgatgaaggtcctaa 27108 Score = 60.0 bits (30), Expect = 9e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 511 cttcatatatttcaagcagttcaggtaggaagtttctcttcatagcttctcttgtttggc 570 |||| ||||||||||| || || || ||||| |||||||| || |||||||||||||| | Sbjct: 26186 cttcgtatatttcaagaagatctgggaggaaatttctctttatggcttctcttgtttgac 26127 Query: 571 aatctatacgacgccaag 588 ||||||| || |||||| Sbjct: 26126 gatctatatgatgccaag 26109 Score = 56.0 bits (28), Expect = 1e-04 Identities = 70/84 (83%) Strand = Plus / Minus Query: 288 aggaaactgaccaatgtgatcctgggggcaacacctgtgcccgaacgcttcttgattgtt 347 ||||| || ||||||||||| |||| || | |||||||||| || | ||||||||||| | Sbjct: 27410 aggaagctaaccaatgtgattctggagggagcacctgtgcctgatctcttcttgattgct 27351 Query: 348 gttgtcttccacggctttccatct 371 || || || ||| ||||||||||| Sbjct: 27350 gtcgttttacacagctttccatct 27327
>gb|AY927891.1| Helicolenus sp. PJS-2005 isolate 23Tasmania control region gene, complete sequence; mitochondrial Length = 443 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 157 taagcaaaacctaaagaaacaa 178 |||||||||||||||||||||| Sbjct: 199 taagcaaaacctaaagaaacaa 220
>dbj|AK222432.1| Ciona intestinalis mRNA for zinc finger protein, complete cds, clone: cibd006i17 Length = 2104 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 509 ctcttcatatatttcaagcag 529 ||||||||||||||||||||| Sbjct: 886 ctcttcatatatttcaagcag 866
>gb|AC135626.4| Homo sapiens chromosome 15, clone RP11-354B3, complete sequence Length = 180684 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 168 taaagaaacaactttggcttc 188 ||||||||||||||||||||| Sbjct: 72266 taaagaaacaactttggcttc 72246
>dbj|AK114118.1| Ciona intestinalis cDNA, clone:cicl030a08, full insert sequence Length = 1573 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 509 ctcttcatatatttcaagcag 529 ||||||||||||||||||||| Sbjct: 848 ctcttcatatatttcaagcag 828
>gb|AC145851.3| Dasypus novemcinctus clone VMRC5-509I16, complete sequence Length = 123145 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 540 aagtttctcttcatagcttc 559 |||||||||||||||||||| Sbjct: 33460 aagtttctcttcatagcttc 33479
>gb|AC167976.4| Mus musculus BAC clone RP23-167L5 from chromosome 3, complete sequence Length = 211791 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 599 aattaactcatcttcattca 618 |||||||||||||||||||| Sbjct: 183285 aattaactcatcttcattca 183266
>gb|BT013301.1| Lycopersicon esculentum clone 134935F, mRNA sequence Length = 1166 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 401 gttgtagaactcacacacaccatg 424 ||||||||||||||| |||||||| Sbjct: 741 gttgtagaactcacaaacaccatg 718
>ref|XM_806204.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509991.29) partial mRNA Length = 1266 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 ttgttgttgtcttccacggc 362 |||||||||||||||||||| Sbjct: 1143 ttgttgttgtcttccacggc 1124
>emb|AL139082.18| Human DNA sequence from clone RP11-248G5 on chromosome 13q14.3-21.1 Contains the 5' end of the ATP7B gene for ATPase, Cu++ transporting, beta polypeptide (Wilson disease), four novel genes, the NEK3 gene for NIMA (never in mitosis gene a)-related kinase 3, the 3' end of a novel gene and five CpG islands, complete sequence Length = 187691 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 ctttggcttctcccaggagc 198 |||||||||||||||||||| Sbjct: 90181 ctttggcttctcccaggagc 90162
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 taaagaaacaactttggctt 187 |||||||||||||||||||| Sbjct: 655336 taaagaaacaactttggctt 655317
>gb|AY899923.1| Salmonella typhimurium isolate L4 plasmid CMY-2 beta-lactamase (blaCMY-2), Blc (blc), SugE (sugE), and FinQ (finQ) genes, complete cds; and TrbA (trbA) gene, partial cds Length = 5429 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 taatttacatatgtgtacatccta 158 ||||||| |||||||||||||||| Sbjct: 3962 taatttagatatgtgtacatccta 3939
>gb|AC106806.2| Homo sapiens chromosome 5 clone RP11-510I6, complete sequence Length = 162485 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 473 tttatcaatattgtcttcaa 492 |||||||||||||||||||| Sbjct: 86297 tttatcaatattgtcttcaa 86316
>dbj|AB178966.1| Macaca fascicularis testis cDNA clone: QtsA-10335, similar to human Nedd4 binding protein 2 (N4BP2), mRNA, RefSeq: NM_018177.2 Length = 2681 Score = 40.1 bits (20), Expect = 8.8 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 605 ctcatcttcattcataagattcttctgc 632 ||||||||||||||||| |||||||||| Sbjct: 1527 ctcatcttcattcataa-attcttctgc 1501
>gb|AC092393.3| Homo sapiens chromosome 1 clone RP4-736I12, complete sequence Length = 90526 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 agaaacaactttggcttctc 190 |||||||||||||||||||| Sbjct: 22764 agaaacaactttggcttctc 22745
>ref|NM_069897.2| Caenorhabditis elegans Dynein Light Chain family member (dlc-2) (dlc-2) mRNA, complete cds Length = 459 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 cacatctttatcaatattgt 486 |||||||||||||||||||| Sbjct: 191 cacatctttatcaatattgt 172
>dbj|AB086650.2| Mus musculus gene for polyA polymerase, complete cds Length = 15896 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gtagaactcacacacaccat 423 |||||||||||||||||||| Sbjct: 5951 gtagaactcacacacaccat 5970
>gb|AE014848.1| Plasmodium falciparum 3D7 chromosome 12, section 5 of 9 of the complete sequence Length = 250707 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 601 ttaactcatcttcattcata 620 |||||||||||||||||||| Sbjct: 18792 ttaactcatcttcattcata 18811
>emb|Z68507.1|CEM18 Caenorhabditis elegans Cosmid M18, complete sequence Length = 26542 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 467 cacatctttatcaatattgt 486 |||||||||||||||||||| Sbjct: 11344 cacatctttatcaatattgt 11363
>emb|BX296559.14| Zebrafish DNA sequence from clone CH211-285F17 in linkage group 24, complete sequence Length = 171695 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 cttcttgattgttgttgtct 354 |||||||||||||||||||| Sbjct: 8971 cttcttgattgttgttgtct 8952
>gb|AY509004.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 plasmid pSC138, complete sequence Length = 138742 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 taatttacatatgtgtacatccta 158 ||||||| |||||||||||||||| Sbjct: 73159 taatttagatatgtgtacatccta 73136
>gb|AC140350.3| Mus musculus BAC clone RP24-251F16 from 3, complete sequence Length = 162787 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 599 aattaactcatcttcattca 618 |||||||||||||||||||| Sbjct: 22917 aattaactcatcttcattca 22898
>gb|AC158526.3| Mus musculus BAC clone RP23-288A9 from chromosome 12, complete sequence Length = 236362 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gtagaactcacacacaccat 423 |||||||||||||||||||| Sbjct: 26811 gtagaactcacacacaccat 26792 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,393,120 Number of Sequences: 3902068 Number of extensions: 6393120 Number of successful extensions: 121715 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 121513 Number of HSP's gapped (non-prelim): 202 length of query: 645 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 622 effective length of database: 17,143,297,704 effective search space: 10663131171888 effective search space used: 10663131171888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)