ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61f17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYM1_YARLI (Q6CAW5) Protein SYM1 51 1e-06
2SYM1_YEAST (Q06563) Protein SYM1 (Stress-inducible yeast MPV17 p... 45 7e-05
3SYM1_ASPFU (Q4WDZ0) Protein sym1 42 8e-04
4SYM1_ASHGO (Q754F0) Protein SYM1 41 0.001
5SYM1_KLULA (Q6CIY7) Protein SYM1 40 0.003
6SYM1_USTMA (Q4P9K6) Protein SYM1 39 0.009
7SYM1_CANGA (Q6FXJ3) Protein SYM1 39 0.009
8SYM1_NEUCR (Q7SCY7) Protein sym-1 38 0.011
9SYM1_GIBZE (Q4IPX8) Protein SYM1 37 0.025
10PXMP2_HUMAN (Q9NR77) Peroxisomal membrane protein 2 (22 kDa pero... 37 0.033
11MPV17_MOUSE (P19258) Protein Mpv17 (Mpv-17) 37 0.033
12SYM1_CRYNE (Q5KND6) Protein SYM1 37 0.033
13SYM1_DEBHA (Q6BMY0) Protein SYM1 37 0.033
14YD1E_SCHPO (Q10244) Hypothetical protein C4G9.14 in chromosome I 36 0.043
15MPV17_RAT (Q5BK62) Protein Mpv17 36 0.057
16PXMP2_MOUSE (P42925) Peroxisomal membrane protein 2 (22 kDa pero... 35 0.097
17PXMP2_RAT (Q07066) Peroxisomal membrane protein 2 (22 kDa peroxi... 35 0.13
18MPV17_HUMAN (P39210) Protein Mpv17 34 0.16
19MPV17_BOVIN (Q2KIN6) Protein Mpv17 34 0.16
20SYM1_CANAL (Q59Q43) Protein SYM1 33 0.37
21MPV17_CAEBR (Q60SZ2) Mpv17-like protein 32 0.82
22MPV17_CAEEL (Q7YWV6) Mpv17-like protein 32 1.1
23SYM1_ASPOR (Q2TXA2) Protein sym1 31 1.4
24MPV17_XENLA (Q66GV0) Protein Mpv17 31 1.4
25MPV17_BRARE (Q5TZ51) Protein Mpv17 30 4.1
26MPV17_DROME (Q9V492) Mpv17-like protein 29 5.3
27DPO4_PASMU (Q9CNG4) DNA polymerase IV (EC 2.7.7.7) (Pol IV) 29 5.3
28PRIA_BACSU (P94461) Primosomal protein N' (EC 3.6.1.-) (ATP-depe... 29 5.3
29DHCR7_MIMIV (Q5UQI4) Probable 7-dehydrocholesterol reductase (EC... 29 5.3
30RPOA_PRRSR (Q9WJB2) Replicase polyprotein 1ab (ORF1ab polyprotei... 29 6.9
31NODC_RHIME (P04341) N-acetylglucosaminyltransferase (EC 2.4.1.-)... 28 9.1

>SYM1_YARLI (Q6CAW5) Protein SYM1|
          Length = 202

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 25/75 (33%), Positives = 36/75 (48%)
 Frame = -2

Query: 458 YFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVEL 279
           YF  +G L  +SP  I+  LK   +  L   W +WP   L   G+VP   R+   +C  L
Sbjct: 92  YFSVMGLLEGKSPDTIWQSLKNQYWDTLKCGWMIWPAFQLFNFGIVPPNFRVLASNCCGL 151

Query: 278 IWVTILSTYSNEKSE 234
           +W T L+  +  K E
Sbjct: 152 VWNTFLAYQNANKME 166



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>SYM1_YEAST (Q06563) Protein SYM1 (Stress-inducible yeast MPV17 protein 1)|
          Length = 197

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 24/73 (32%), Positives = 34/73 (46%)
 Frame = -2

Query: 458 YFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVEL 279
           YF  +  +   S      ++K   +P L   W +WP    I   VVP++ RL  V+ V +
Sbjct: 110 YFTCMSIMEGRSFDVAKLKIKEQWWPTLLTNWAVWPLFQAINFSVVPLQHRLLAVNVVAI 169

Query: 278 IWVTILSTYSNEK 240
            W T LS Y N K
Sbjct: 170 FWNTYLS-YKNSK 181



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>SYM1_ASPFU (Q4WDZ0) Protein sym1|
          Length = 196

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = -2

Query: 404 ELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVTILSTYSNEKSE 234
           +L+   +P L A W +WPF  L+   +VP++ R+  V+ + + W   LS  +N  S+
Sbjct: 134 KLERSYWPALKANWTVWPFLQLVNFALVPLQFRVLTVNVLNIGWNCFLSLSNNVGSQ 190



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>SYM1_ASHGO (Q754F0) Protein SYM1|
          Length = 182

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 22/76 (28%), Positives = 36/76 (47%)
 Frame = -2

Query: 458 YFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVEL 279
           Y+ A+  +   S   +   L    +  L A W +WP   L    +VP++ RL  V+ + +
Sbjct: 108 YYTAMALMEGGSLEDVRIRLSEKWWSTLLANWIVWPAFQLCNFSLVPVQHRLLTVNVLSI 167

Query: 278 IWVTILSTYSNEKSEA 231
            W T LS YSN  + +
Sbjct: 168 FWNTYLS-YSNSTASS 182



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>SYM1_KLULA (Q6CIY7) Protein SYM1|
          Length = 195

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -2

Query: 458 YFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVEL 279
           Y+  +  L  +S      +++   +P L   W +WP   LI   +VP+  RL  V+ + +
Sbjct: 108 YYGVMSILEGKSLVDAKKKIEDNWWPTLVTNWYVWPAFQLINFSLVPVHHRLFSVNIISI 167

Query: 278 IWVTILS 258
            W   LS
Sbjct: 168 FWNAFLS 174



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>SYM1_USTMA (Q4P9K6) Protein SYM1|
          Length = 199

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = -2

Query: 458 YFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVEL 279
           +F A   +   SP    +++    +P L   W LW     +   +VP  QRL +V+ V +
Sbjct: 103 FFGATTIMEGGSPDQAKNKIIHNWWPTLKTAWGLWIPVQTLNMALVPPSQRLLFVNVVSI 162

Query: 278 IWVTILSTYSNEKSE 234
            W T LS  S   S+
Sbjct: 163 FWNTFLSIKSAAASD 177



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>SYM1_CANGA (Q6FXJ3) Protein SYM1|
          Length = 210

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = -2

Query: 458 YFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVEL 279
           YF  +  L          ++K   +  L   W +WP   ++   +VP++ RL   + V +
Sbjct: 122 YFGCMSLLEGHGLGAAREKIKLQWWDTLKTNWCVWPLFQMVNFSLVPLQHRLLAANVVAI 181

Query: 278 IWVTILSTYSNEK 240
            W T LS Y+N +
Sbjct: 182 FWNTFLS-YTNSQ 193



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>SYM1_NEUCR (Q7SCY7) Protein sym-1|
          Length = 190

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -2

Query: 404 ELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVTILS 258
           +L+   +  L+  W +WPF  ++   VVP++ R+ +V+ + + W   LS
Sbjct: 119 KLQKNYWEALSTNWMVWPFVQMVNFKVVPLDHRVLFVNVISIGWNCYLS 167



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>SYM1_GIBZE (Q4IPX8) Protein SYM1|
          Length = 175

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = -2

Query: 386 FPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVTILSTYSNE 243
           +P L A W +WP   +I   ++P++ RL + + + + W + LS  +++
Sbjct: 128 WPALKANWMVWPAVQVINFSLIPLQYRLFFANIIAIGWNSYLSWVNSQ 175



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>PXMP2_HUMAN (Q9NR77) Peroxisomal membrane protein 2 (22 kDa peroxisomal|
           membrane protein)
          Length = 194

 Score = 36.6 bits (83), Expect = 0.033
 Identities = 14/68 (20%), Positives = 32/68 (47%)
 Frame = -2

Query: 458 YFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVEL 279
           +F+ + FL  +      ++++   +P L   W++W     I    VP++ R+ + +   L
Sbjct: 124 FFLIMNFLEGKDASAFAAKMRGGFWPALRMNWRVWTPLQFININYVPLKFRVLFANLAAL 183

Query: 278 IWVTILST 255
            W   L++
Sbjct: 184 FWYAYLAS 191



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>MPV17_MOUSE (P19258) Protein Mpv17 (Mpv-17)|
          Length = 176

 Score = 36.6 bits (83), Expect = 0.033
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = -2

Query: 446 LGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVT 267
           +G L   S    +++LK      L   + LWP   L    +VP+  RL  V CV ++W +
Sbjct: 108 VGILNGMSAQDNWAKLKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAIVWNS 167

Query: 266 ILS 258
            LS
Sbjct: 168 YLS 170



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>SYM1_CRYNE (Q5KND6) Protein SYM1|
          Length = 190

 Score = 36.6 bits (83), Expect = 0.033
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = -2

Query: 464 SXYFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCV 285
           S +F A+ F+  +       +     FP L A W L+    ++  G+VP++ RL  V+ V
Sbjct: 102 SGFFTAMTFMEGKDFNAAKVKWHESFFPTLQANWMLFIPFQILNMGLVPLQYRLLAVNAV 161

Query: 284 ELIWVTILS 258
            + W   LS
Sbjct: 162 NIPWNAFLS 170



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>SYM1_DEBHA (Q6BMY0) Protein SYM1|
          Length = 206

 Score = 36.6 bits (83), Expect = 0.033
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -2

Query: 458 YFVALGFLRW-ESPFXIFSE-LKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCV 285
           Y+  +  L + ++P  +  E L A  F  L   W +WP   L    ++P++ RL  V+  
Sbjct: 114 YYSVMSVLEFHDNPLQVAREKLHAHWFNTLKTNWVVWPTFQLFNFALIPVQFRLLVVNIF 173

Query: 284 ELIWVTILSTYSNEKSE 234
            + W   LS+  N K +
Sbjct: 174 SIGWNCYLSSVLNHKHD 190



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>YD1E_SCHPO (Q10244) Hypothetical protein C4G9.14 in chromosome I|
          Length = 221

 Score = 36.2 bits (82), Expect = 0.043
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = -2

Query: 458 YFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVEL 279
           +F+ +G    +S   + S  +   +P L A + LWP   L     VP+  ++ + + V +
Sbjct: 145 FFLFMGITECKSYERLKSYFRKHYWPTLKANYILWPAVQLFNFTFVPLVLQVIFANAVSM 204

Query: 278 IWVTILS 258
           +W   LS
Sbjct: 205 VWTAYLS 211



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>MPV17_RAT (Q5BK62) Protein Mpv17|
          Length = 176

 Score = 35.8 bits (81), Expect = 0.057
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = -2

Query: 446 LGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVT 267
           +G L   S    +++LK      L   + LWP   L    +VP+  RL  V CV ++W +
Sbjct: 108 VGVLNGMSAQDNWAKLKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVVWNS 167

Query: 266 ILS 258
            LS
Sbjct: 168 YLS 170



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>PXMP2_MOUSE (P42925) Peroxisomal membrane protein 2 (22 kDa peroxisomal|
           membrane protein)
          Length = 193

 Score = 35.0 bits (79), Expect = 0.097
 Identities = 13/68 (19%), Positives = 32/68 (47%)
 Frame = -2

Query: 458 YFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVEL 279
           +F  +  L  ++     +++++  +P L   W++W     I    VP++ R+ + +   L
Sbjct: 123 FFFVMNLLEGKNVSVFVAKMRSGFWPALQMNWRMWTPLQFININYVPLQFRVLFANMAAL 182

Query: 278 IWVTILST 255
            W   L++
Sbjct: 183 FWYAYLAS 190



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>PXMP2_RAT (Q07066) Peroxisomal membrane protein 2 (22 kDa peroxisomal|
           membrane protein)
          Length = 193

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 13/68 (19%), Positives = 32/68 (47%)
 Frame = -2

Query: 458 YFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVEL 279
           +F  +  L  ++     +++++  +P L   W++W     I    VP++ R+ + +   L
Sbjct: 123 FFFVMNLLEGKNISVFVAKMRSGFWPALQMNWRMWTPLQFININYVPLQFRVLFANMAAL 182

Query: 278 IWVTILST 255
            W   L++
Sbjct: 183 FWYAYLAS 190



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>MPV17_HUMAN (P39210) Protein Mpv17|
          Length = 176

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 377 LTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVTILS 258
           L   + LWP   L    +VP+  RL  V CV +IW + LS
Sbjct: 131 LITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLS 170



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>MPV17_BOVIN (Q2KIN6) Protein Mpv17|
          Length = 176

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 377 LTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVTILS 258
           L   + LWP   L    +VP+  RL  V CV +IW + LS
Sbjct: 131 LITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLS 170



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>SYM1_CANAL (Q59Q43) Protein SYM1|
          Length = 195

 Score = 33.1 bits (74), Expect = 0.37
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -2

Query: 458 YFVALGFLRWESPFX--IFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCV 285
           Y+ ++  L    PF   I  +     +  L + W +WP        ++P++ RL  V+ +
Sbjct: 120 YYSSMTILENRQPFLDNIIDKFNTSWWITLKSNWLVWPLFQFFNFYLLPVQFRLLAVNII 179

Query: 284 ELIWVTILS 258
            + W T LS
Sbjct: 180 SIGWNTYLS 188



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>MPV17_CAEBR (Q60SZ2) Mpv17-like protein|
          Length = 189

 Score = 32.0 bits (71), Expect = 0.82
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = -2

Query: 470 WNSXYFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVD 291
           +N+   V L  L   S      ++K   + + T+  +LWP   LI    VP+  R+  + 
Sbjct: 97  FNAIILVNLRLLEGFSFSKSVDKMKNDWYDVYTSSLRLWPAVQLINFYFVPLNYRVILIQ 156

Query: 290 CVELIWVTILS 258
            V   W + LS
Sbjct: 157 VVAFFWNSWLS 167



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>MPV17_CAEEL (Q7YWV6) Mpv17-like protein|
          Length = 181

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 18/71 (25%), Positives = 29/71 (40%)
 Frame = -2

Query: 470 WNSXYFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVD 291
           +N+     L  L+ +S    +  LK   F +     K+WPF  ++    VP+  R+    
Sbjct: 97  FNAAILFNLRLLQHQSAEKSWDLLKEDWFNIYATSLKVWPFVQVVNLCFVPLNYRVILNQ 156

Query: 290 CVELIWVTILS 258
            V   W   LS
Sbjct: 157 VVAFFWNCYLS 167



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>SYM1_ASPOR (Q2TXA2) Protein sym1|
          Length = 173

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 383 PMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVTILS 258
           P   A   +WP    +   +VP+E R+  V+ V L W  +LS
Sbjct: 125 PSYKANLTIWPLVQGVNFSIVPLEYRVLVVNLVSLGWNCLLS 166



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>MPV17_XENLA (Q66GV0) Protein Mpv17|
          Length = 177

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 413 IFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVTILSTYSNE 243
           I+ +LK      L   + +WP   +     +P+  RL  V  V +IW + LS  +N+
Sbjct: 120 IWGKLKRDYKDALITNYYIWPAVQVANFYFIPLYHRLAVVQFVAIIWNSYLSWKANK 176



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>MPV17_BRARE (Q5TZ51) Protein Mpv17|
          Length = 177

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 377 LTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVTILSTYSNE 243
           L + + LWP   +     +P+  RL  V  V ++W + LS  +N+
Sbjct: 132 LISNYYLWPPVQIANFYFIPLHHRLAVVQIVAVVWNSYLSWKANK 176



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>MPV17_DROME (Q9V492) Mpv17-like protein|
          Length = 168

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 380 MLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVTILSTYSN 246
           +L   + LWP A ++    VP+  ++ +   + L+W   LS   N
Sbjct: 123 ILVRNYMLWPAAQMLNFRFVPLGYQVLYAQFIALVWNCYLSMILN 167



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>DPO4_PASMU (Q9CNG4) DNA polymerase IV (EC 2.7.7.7) (Pol IV)|
          Length = 355

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 38  CNRCKAFFFTHAALATNCXYNLYNPNITKPEQFPLFQSIKQQNHEV 175
           CN     F  H+A++T   + L    I  P   PL++ + QQ H++
Sbjct: 44  CNYEARKFGLHSAMSTAQAFKLCPNLILLPVNMPLYKQVSQQIHQI 89



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>PRIA_BACSU (P94461) Primosomal protein N' (EC 3.6.1.-) (ATP-dependent helicase|
           priA) (Replication factor Y)
          Length = 805

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 123 FVMLGLYKLYXQLVASAACVKKKALHLLQANCAGQTK 13
           +  L L  +  + VA AA   +K  H L+ANC   TK
Sbjct: 707 YYYLALVTVSHEEVAKAAVTAEKIAHFLKANCGADTK 743



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>DHCR7_MIMIV (Q5UQI4) Probable 7-dehydrocholesterol reductase (EC 1.3.1.21)|
           (7-DHC reductase) (Sterol delta-7-reductase)
          Length = 447

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 41  NRCKAFFFTHAALATNCXYNLYNPNITKPEQFPLFQSI 154
           N  +AF  TH  +  +C Y L++P I       +F S+
Sbjct: 127 NGLQAFIITHVLVIMSCYYGLFSPTIIMDNWGSIFWSV 164



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>RPOA_PRRSR (Q9WJB2) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
            Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
            papain-like cysteine proteinase (EC 3.4.22.-)
            (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
            (EC 3.4.22.-) (PCP
          Length = 3960

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 363  EAVAICTLNYXWCGSYRTKTXLGRLCRINLGHHLV 259
            + V  CTL   +CG  +T+T LG    I L H  V
Sbjct: 2822 QTVTPCTLKKQYCGKKKTRTILGTNNFIALAHRAV 2856



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>NODC_RHIME (P04341) N-acetylglucosaminyltransferase (EC 2.4.1.-) (Nodulation|
           protein C)
          Length = 426

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = -2

Query: 455 FVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELI 276
           F+AL  LR  SPF  F  +      +L A   +   AHLI    VP    L  + C+ +I
Sbjct: 290 FLALPLLRGLSPFLAFDAVGQNIGQLLLALSVVTGLAHLIMTATVPWWTILI-IACMTII 348

Query: 275 WVTILSTYSNE 243
             ++++ ++ +
Sbjct: 349 RCSVVALHARQ 359


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,864,457
Number of Sequences: 219361
Number of extensions: 935895
Number of successful extensions: 1909
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1909
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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