ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61f17 |
|---|---|
| Clone Library Name | barley_pub |
>SYM1_YARLI (Q6CAW5) Protein SYM1| Length = 202 Score = 51.2 bits (121), Expect = 1e-06 Identities = 25/75 (33%), Positives = 36/75 (48%) Frame = -2 Query: 458 YFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVEL 279 YF +G L +SP I+ LK + L W +WP L G+VP R+ +C L Sbjct: 92 YFSVMGLLEGKSPDTIWQSLKNQYWDTLKCGWMIWPAFQLFNFGIVPPNFRVLASNCCGL 151 Query: 278 IWVTILSTYSNEKSE 234 +W T L+ + K E Sbjct: 152 VWNTFLAYQNANKME 166
>SYM1_YEAST (Q06563) Protein SYM1 (Stress-inducible yeast MPV17 protein 1)| Length = 197 Score = 45.4 bits (106), Expect = 7e-05 Identities = 24/73 (32%), Positives = 34/73 (46%) Frame = -2 Query: 458 YFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVEL 279 YF + + S ++K +P L W +WP I VVP++ RL V+ V + Sbjct: 110 YFTCMSIMEGRSFDVAKLKIKEQWWPTLLTNWAVWPLFQAINFSVVPLQHRLLAVNVVAI 169 Query: 278 IWVTILSTYSNEK 240 W T LS Y N K Sbjct: 170 FWNTYLS-YKNSK 181
>SYM1_ASPFU (Q4WDZ0) Protein sym1| Length = 196 Score = 42.0 bits (97), Expect = 8e-04 Identities = 18/57 (31%), Positives = 32/57 (56%) Frame = -2 Query: 404 ELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVTILSTYSNEKSE 234 +L+ +P L A W +WPF L+ +VP++ R+ V+ + + W LS +N S+ Sbjct: 134 KLERSYWPALKANWTVWPFLQLVNFALVPLQFRVLTVNVLNIGWNCFLSLSNNVGSQ 190
>SYM1_ASHGO (Q754F0) Protein SYM1| Length = 182 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/76 (28%), Positives = 36/76 (47%) Frame = -2 Query: 458 YFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVEL 279 Y+ A+ + S + L + L A W +WP L +VP++ RL V+ + + Sbjct: 108 YYTAMALMEGGSLEDVRIRLSEKWWSTLLANWIVWPAFQLCNFSLVPVQHRLLTVNVLSI 167 Query: 278 IWVTILSTYSNEKSEA 231 W T LS YSN + + Sbjct: 168 FWNTYLS-YSNSTASS 182
>SYM1_KLULA (Q6CIY7) Protein SYM1| Length = 195 Score = 40.0 bits (92), Expect = 0.003 Identities = 18/67 (26%), Positives = 31/67 (46%) Frame = -2 Query: 458 YFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVEL 279 Y+ + L +S +++ +P L W +WP LI +VP+ RL V+ + + Sbjct: 108 YYGVMSILEGKSLVDAKKKIEDNWWPTLVTNWYVWPAFQLINFSLVPVHHRLFSVNIISI 167 Query: 278 IWVTILS 258 W LS Sbjct: 168 FWNAFLS 174
>SYM1_USTMA (Q4P9K6) Protein SYM1| Length = 199 Score = 38.5 bits (88), Expect = 0.009 Identities = 22/75 (29%), Positives = 34/75 (45%) Frame = -2 Query: 458 YFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVEL 279 +F A + SP +++ +P L W LW + +VP QRL +V+ V + Sbjct: 103 FFGATTIMEGGSPDQAKNKIIHNWWPTLKTAWGLWIPVQTLNMALVPPSQRLLFVNVVSI 162 Query: 278 IWVTILSTYSNEKSE 234 W T LS S S+ Sbjct: 163 FWNTFLSIKSAAASD 177
>SYM1_CANGA (Q6FXJ3) Protein SYM1| Length = 210 Score = 38.5 bits (88), Expect = 0.009 Identities = 19/73 (26%), Positives = 33/73 (45%) Frame = -2 Query: 458 YFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVEL 279 YF + L ++K + L W +WP ++ +VP++ RL + V + Sbjct: 122 YFGCMSLLEGHGLGAAREKIKLQWWDTLKTNWCVWPLFQMVNFSLVPLQHRLLAANVVAI 181 Query: 278 IWVTILSTYSNEK 240 W T LS Y+N + Sbjct: 182 FWNTFLS-YTNSQ 193
>SYM1_NEUCR (Q7SCY7) Protein sym-1| Length = 190 Score = 38.1 bits (87), Expect = 0.011 Identities = 14/49 (28%), Positives = 28/49 (57%) Frame = -2 Query: 404 ELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVTILS 258 +L+ + L+ W +WPF ++ VVP++ R+ +V+ + + W LS Sbjct: 119 KLQKNYWEALSTNWMVWPFVQMVNFKVVPLDHRVLFVNVISIGWNCYLS 167
>SYM1_GIBZE (Q4IPX8) Protein SYM1| Length = 175 Score = 37.0 bits (84), Expect = 0.025 Identities = 13/48 (27%), Positives = 28/48 (58%) Frame = -2 Query: 386 FPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVTILSTYSNE 243 +P L A W +WP +I ++P++ RL + + + + W + LS +++ Sbjct: 128 WPALKANWMVWPAVQVINFSLIPLQYRLFFANIIAIGWNSYLSWVNSQ 175
>PXMP2_HUMAN (Q9NR77) Peroxisomal membrane protein 2 (22 kDa peroxisomal| membrane protein) Length = 194 Score = 36.6 bits (83), Expect = 0.033 Identities = 14/68 (20%), Positives = 32/68 (47%) Frame = -2 Query: 458 YFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVEL 279 +F+ + FL + ++++ +P L W++W I VP++ R+ + + L Sbjct: 124 FFLIMNFLEGKDASAFAAKMRGGFWPALRMNWRVWTPLQFININYVPLKFRVLFANLAAL 183 Query: 278 IWVTILST 255 W L++ Sbjct: 184 FWYAYLAS 191
>MPV17_MOUSE (P19258) Protein Mpv17 (Mpv-17)| Length = 176 Score = 36.6 bits (83), Expect = 0.033 Identities = 20/63 (31%), Positives = 30/63 (47%) Frame = -2 Query: 446 LGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVT 267 +G L S +++LK L + LWP L +VP+ RL V CV ++W + Sbjct: 108 VGILNGMSAQDNWAKLKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAIVWNS 167 Query: 266 ILS 258 LS Sbjct: 168 YLS 170
>SYM1_CRYNE (Q5KND6) Protein SYM1| Length = 190 Score = 36.6 bits (83), Expect = 0.033 Identities = 20/69 (28%), Positives = 33/69 (47%) Frame = -2 Query: 464 SXYFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCV 285 S +F A+ F+ + + FP L A W L+ ++ G+VP++ RL V+ V Sbjct: 102 SGFFTAMTFMEGKDFNAAKVKWHESFFPTLQANWMLFIPFQILNMGLVPLQYRLLAVNAV 161 Query: 284 ELIWVTILS 258 + W LS Sbjct: 162 NIPWNAFLS 170
>SYM1_DEBHA (Q6BMY0) Protein SYM1| Length = 206 Score = 36.6 bits (83), Expect = 0.033 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Frame = -2 Query: 458 YFVALGFLRW-ESPFXIFSE-LKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCV 285 Y+ + L + ++P + E L A F L W +WP L ++P++ RL V+ Sbjct: 114 YYSVMSVLEFHDNPLQVAREKLHAHWFNTLKTNWVVWPTFQLFNFALIPVQFRLLVVNIF 173 Query: 284 ELIWVTILSTYSNEKSE 234 + W LS+ N K + Sbjct: 174 SIGWNCYLSSVLNHKHD 190
>YD1E_SCHPO (Q10244) Hypothetical protein C4G9.14 in chromosome I| Length = 221 Score = 36.2 bits (82), Expect = 0.043 Identities = 17/67 (25%), Positives = 32/67 (47%) Frame = -2 Query: 458 YFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVEL 279 +F+ +G +S + S + +P L A + LWP L VP+ ++ + + V + Sbjct: 145 FFLFMGITECKSYERLKSYFRKHYWPTLKANYILWPAVQLFNFTFVPLVLQVIFANAVSM 204 Query: 278 IWVTILS 258 +W LS Sbjct: 205 VWTAYLS 211
>MPV17_RAT (Q5BK62) Protein Mpv17| Length = 176 Score = 35.8 bits (81), Expect = 0.057 Identities = 20/63 (31%), Positives = 30/63 (47%) Frame = -2 Query: 446 LGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVT 267 +G L S +++LK L + LWP L +VP+ RL V CV ++W + Sbjct: 108 VGVLNGMSAQDNWAKLKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVVWNS 167 Query: 266 ILS 258 LS Sbjct: 168 YLS 170
>PXMP2_MOUSE (P42925) Peroxisomal membrane protein 2 (22 kDa peroxisomal| membrane protein) Length = 193 Score = 35.0 bits (79), Expect = 0.097 Identities = 13/68 (19%), Positives = 32/68 (47%) Frame = -2 Query: 458 YFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVEL 279 +F + L ++ +++++ +P L W++W I VP++ R+ + + L Sbjct: 123 FFFVMNLLEGKNVSVFVAKMRSGFWPALQMNWRMWTPLQFININYVPLQFRVLFANMAAL 182 Query: 278 IWVTILST 255 W L++ Sbjct: 183 FWYAYLAS 190
>PXMP2_RAT (Q07066) Peroxisomal membrane protein 2 (22 kDa peroxisomal| membrane protein) Length = 193 Score = 34.7 bits (78), Expect = 0.13 Identities = 13/68 (19%), Positives = 32/68 (47%) Frame = -2 Query: 458 YFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVEL 279 +F + L ++ +++++ +P L W++W I VP++ R+ + + L Sbjct: 123 FFFVMNLLEGKNISVFVAKMRSGFWPALQMNWRMWTPLQFININYVPLQFRVLFANMAAL 182 Query: 278 IWVTILST 255 W L++ Sbjct: 183 FWYAYLAS 190
>MPV17_HUMAN (P39210) Protein Mpv17| Length = 176 Score = 34.3 bits (77), Expect = 0.16 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -2 Query: 377 LTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVTILS 258 L + LWP L +VP+ RL V CV +IW + LS Sbjct: 131 LITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLS 170
>MPV17_BOVIN (Q2KIN6) Protein Mpv17| Length = 176 Score = 34.3 bits (77), Expect = 0.16 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -2 Query: 377 LTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVTILS 258 L + LWP L +VP+ RL V CV +IW + LS Sbjct: 131 LITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLS 170
>SYM1_CANAL (Q59Q43) Protein SYM1| Length = 195 Score = 33.1 bits (74), Expect = 0.37 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Frame = -2 Query: 458 YFVALGFLRWESPFX--IFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCV 285 Y+ ++ L PF I + + L + W +WP ++P++ RL V+ + Sbjct: 120 YYSSMTILENRQPFLDNIIDKFNTSWWITLKSNWLVWPLFQFFNFYLLPVQFRLLAVNII 179 Query: 284 ELIWVTILS 258 + W T LS Sbjct: 180 SIGWNTYLS 188
>MPV17_CAEBR (Q60SZ2) Mpv17-like protein| Length = 189 Score = 32.0 bits (71), Expect = 0.82 Identities = 19/71 (26%), Positives = 31/71 (43%) Frame = -2 Query: 470 WNSXYFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVD 291 +N+ V L L S ++K + + T+ +LWP LI VP+ R+ + Sbjct: 97 FNAIILVNLRLLEGFSFSKSVDKMKNDWYDVYTSSLRLWPAVQLINFYFVPLNYRVILIQ 156 Query: 290 CVELIWVTILS 258 V W + LS Sbjct: 157 VVAFFWNSWLS 167
>MPV17_CAEEL (Q7YWV6) Mpv17-like protein| Length = 181 Score = 31.6 bits (70), Expect = 1.1 Identities = 18/71 (25%), Positives = 29/71 (40%) Frame = -2 Query: 470 WNSXYFVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVD 291 +N+ L L+ +S + LK F + K+WPF ++ VP+ R+ Sbjct: 97 FNAAILFNLRLLQHQSAEKSWDLLKEDWFNIYATSLKVWPFVQVVNLCFVPLNYRVILNQ 156 Query: 290 CVELIWVTILS 258 V W LS Sbjct: 157 VVAFFWNCYLS 167
>SYM1_ASPOR (Q2TXA2) Protein sym1| Length = 173 Score = 31.2 bits (69), Expect = 1.4 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = -2 Query: 383 PMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVTILS 258 P A +WP + +VP+E R+ V+ V L W +LS Sbjct: 125 PSYKANLTIWPLVQGVNFSIVPLEYRVLVVNLVSLGWNCLLS 166
>MPV17_XENLA (Q66GV0) Protein Mpv17| Length = 177 Score = 31.2 bits (69), Expect = 1.4 Identities = 16/57 (28%), Positives = 27/57 (47%) Frame = -2 Query: 413 IFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVTILSTYSNE 243 I+ +LK L + +WP + +P+ RL V V +IW + LS +N+ Sbjct: 120 IWGKLKRDYKDALITNYYIWPAVQVANFYFIPLYHRLAVVQFVAIIWNSYLSWKANK 176
>MPV17_BRARE (Q5TZ51) Protein Mpv17| Length = 177 Score = 29.6 bits (65), Expect = 4.1 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = -2 Query: 377 LTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVTILSTYSNE 243 L + + LWP + +P+ RL V V ++W + LS +N+ Sbjct: 132 LISNYYLWPPVQIANFYFIPLHHRLAVVQIVAVVWNSYLSWKANK 176
>MPV17_DROME (Q9V492) Mpv17-like protein| Length = 168 Score = 29.3 bits (64), Expect = 5.3 Identities = 12/45 (26%), Positives = 22/45 (48%) Frame = -2 Query: 380 MLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELIWVTILSTYSN 246 +L + LWP A ++ VP+ ++ + + L+W LS N Sbjct: 123 ILVRNYMLWPAAQMLNFRFVPLGYQVLYAQFIALVWNCYLSMILN 167
>DPO4_PASMU (Q9CNG4) DNA polymerase IV (EC 2.7.7.7) (Pol IV)| Length = 355 Score = 29.3 bits (64), Expect = 5.3 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = +2 Query: 38 CNRCKAFFFTHAALATNCXYNLYNPNITKPEQFPLFQSIKQQNHEV 175 CN F H+A++T + L I P PL++ + QQ H++ Sbjct: 44 CNYEARKFGLHSAMSTAQAFKLCPNLILLPVNMPLYKQVSQQIHQI 89
>PRIA_BACSU (P94461) Primosomal protein N' (EC 3.6.1.-) (ATP-dependent helicase| priA) (Replication factor Y) Length = 805 Score = 29.3 bits (64), Expect = 5.3 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = -1 Query: 123 FVMLGLYKLYXQLVASAACVKKKALHLLQANCAGQTK 13 + L L + + VA AA +K H L+ANC TK Sbjct: 707 YYYLALVTVSHEEVAKAAVTAEKIAHFLKANCGADTK 743
>DHCR7_MIMIV (Q5UQI4) Probable 7-dehydrocholesterol reductase (EC 1.3.1.21)| (7-DHC reductase) (Sterol delta-7-reductase) Length = 447 Score = 29.3 bits (64), Expect = 5.3 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = +2 Query: 41 NRCKAFFFTHAALATNCXYNLYNPNITKPEQFPLFQSI 154 N +AF TH + +C Y L++P I +F S+ Sbjct: 127 NGLQAFIITHVLVIMSCYYGLFSPTIIMDNWGSIFWSV 164
>RPOA_PRRSR (Q9WJB2) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP Length = 3960 Score = 28.9 bits (63), Expect = 6.9 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -1 Query: 363 EAVAICTLNYXWCGSYRTKTXLGRLCRINLGHHLV 259 + V CTL +CG +T+T LG I L H V Sbjct: 2822 QTVTPCTLKKQYCGKKKTRTILGTNNFIALAHRAV 2856
>NODC_RHIME (P04341) N-acetylglucosaminyltransferase (EC 2.4.1.-) (Nodulation| protein C) Length = 426 Score = 28.5 bits (62), Expect = 9.1 Identities = 20/71 (28%), Positives = 34/71 (47%) Frame = -2 Query: 455 FVALGFLRWESPFXIFSELKAXXFPMLTAXWKLWPFAHLITXGVVPIEQRLXWVDCVELI 276 F+AL LR SPF F + +L A + AHLI VP L + C+ +I Sbjct: 290 FLALPLLRGLSPFLAFDAVGQNIGQLLLALSVVTGLAHLIMTATVPWWTILI-IACMTII 348 Query: 275 WVTILSTYSNE 243 ++++ ++ + Sbjct: 349 RCSVVALHARQ 359 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,864,457 Number of Sequences: 219361 Number of extensions: 935895 Number of successful extensions: 1909 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 1886 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1909 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
