ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61f17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463067.1| Oryza sativa (japonica cultivar-group), mRNA 127 4e-26
2dbj|AK099233.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 4e-26
3dbj|AK064786.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 4e-26
4gb|AY109070.1| Zea mays PCO136780 mRNA sequence 127 4e-26
5gb|BT018600.1| Zea mays clone EL01N0449B06.d mRNA sequence 113 5e-22
6gb|AY108423.1| Zea mays PCO136781 mRNA sequence 100 8e-18
7gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genom... 66 1e-07
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 66 1e-07
9gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic ... 66 1e-07
10dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
12dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
13dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
14gb|BT014218.1| Lycopersicon esculentum clone 133396F, mRNA sequence 60 7e-06
15ref|NM_104165.2| Arabidopsis thaliana unknown protein AT1G52870 ... 48 0.026
16ref|NM_104164.3| Arabidopsis thaliana unknown protein AT1G52870 ... 48 0.026
17gb|AF385726.1|AF385726 Arabidopsis thaliana At1g52870/F14G24_14 ... 48 0.026
18emb|BX814282.1|CNS0AC8U Arabidopsis thaliana Full-length cDNA Co... 48 0.026
19emb|BX815151.1|CNS0ABBR Arabidopsis thaliana Full-length cDNA Co... 48 0.026
20emb|BX815599.1|CNS0AAGX Arabidopsis thaliana Full-length cDNA Co... 48 0.026
21gb|AY085076.1| Arabidopsis thaliana clone 126586 mRNA, complete ... 48 0.026
22gb|BT002228.1| Arabidopsis thaliana At1g52870/F14G24_14 mRNA, co... 48 0.026
23emb|BX815481.1|CNS0ABCN Arabidopsis thaliana Full-length cDNA Co... 44 0.41
24ref|NM_116579.3| Arabidopsis thaliana unknown protein AT4G03410 ... 42 1.6
25ref|NM_202776.1| Arabidopsis thaliana unknown protein AT4G03410 ... 42 1.6
26gb|BT015863.1| Arabidopsis thaliana At4g03410 mRNA, complete cds 42 1.6
27gb|DQ146945.1| Pseudomonas fluorescens strain F protease (aprX) ... 42 1.6
28gb|AY298902.1| Pseudomonas fluorescens strain A506 extracellular... 42 1.6
29gb|BT008684.1| Arabidopsis thaliana clone RAFL21-17-H08 (R51095)... 42 1.6
30gb|AC090220.13| Homo sapiens chromosome 18, clone RP11-712P20, c... 42 1.6
31gb|AC099010.1| Drosophila melanogaster, chromosome 2L, region 27... 42 1.6
32gb|AC007977.12|AC007977 Drosophila melanogaster, chromosome 2L, ... 42 1.6
33emb|BX826658.1|CNS0A394 Arabidopsis thaliana Full-length cDNA Co... 42 1.6
34emb|BX826703.1|CNS0A36O Arabidopsis thaliana Full-length cDNA Co... 42 1.6
35gb|AE003615.3| Drosophila melanogaster chromosome 2L, section 24... 42 1.6
36gb|AC004277.1|AC004277 Drosophila melanogaster DNA sequence (P1 ... 42 1.6
37emb|AL671910.9| Mouse DNA sequence from clone RP23-245M12 on chr... 42 1.6
38gb|AC008097.5| Drosophila melanogaster clone BACR20D06, complete... 40 6.4
39gb|BT012319.1| Drosophila melanogaster AT29374 full insert cDNA 40 6.4
40gb|AC115754.7| Mus musculus chromosome 12, clone RP23-34D20, com... 40 6.4
41ref|NM_166103.1| Drosophila melanogaster CG30466-RA (CG30466), mRNA 40 6.4
42gb|AC166644.7| Mus musculus chromosome 1, clone RP23-375C6, comp... 40 6.4
43gb|AC156568.3| Mus musculus BAC clone RP23-291D3 from chromosome... 40 6.4
44gb|AC019018.9|AC019018 Arabidopsis thaliana chromosome 1 BAC F14... 40 6.4
45gb|AC016751.7| Homo sapiens BAC clone RP11-504O20 from 2, comple... 40 6.4
46gb|AY220758.1| Homo sapiens ataxia telangiectasia mutated (inclu... 40 6.4
47gb|AC008369.1|AC008369 Drosophila melanogaster, chromosome 2R, r... 40 6.4
48gb|AE003810.3| Drosophila melanogaster chromosome 2R, section 40... 40 6.4
49gb|AE003793.3| Drosophila melanogaster chromosome 2R, section 57... 40 6.4
50gb|AF123310.1|AF123310 Arabidopsis thaliana NAC domain protein N... 40 6.4
51dbj|AP001925.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.4
52dbj|AP005718.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.4
53gb|AC120132.11| Mus musculus chromosome 6, clone RP23-105D1, com... 40 6.4
54dbj|AP000838.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 6.4
55gb|U82828.1|HSU82828 Homo sapiens ataxia telangiectasia (ATM) ge... 40 6.4 
>ref|XM_463067.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1318

 Score =  127 bits (64), Expect = 4e-26
 Identities = 133/157 (84%)
 Strand = Plus / Minus

                                                                        
Query: 227  tccttgcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcga 286
            |||||||||||||||||||||| |||||||||||||  || || ||||||||||| || |
Sbjct: 1093 tccttgcttcagatttctcgttggagtaagttgacagtattgtaacccagattaactcca 1034

                                                                        
Query: 287  cacagtcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtg 346
            | ||||| ||||| | |||||||||||| | |||||| |  |||| |||||  |||||||
Sbjct: 1033 cgcagtcaacccacagaagtctttgttcaacaggaactaggccatatgtaaccaagtgtg 974

                                                 
Query: 347  caaatggccacagcttccatncagcagtaagcatggg 383
            |||| ||||||| ||||||  | ||||||||||||||
Sbjct: 973  caaaaggccacaacttccagccggcagtaagcatggg 937
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>dbj|AK099233.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098D10, full
            insert sequence
          Length = 1298

 Score =  127 bits (64), Expect = 4e-26
 Identities = 133/157 (84%)
 Strand = Plus / Minus

                                                                        
Query: 227  tccttgcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcga 286
            |||||||||||||||||||||| |||||||||||||  || || ||||||||||| || |
Sbjct: 1093 tccttgcttcagatttctcgttggagtaagttgacagtattgtaacccagattaactcca 1034

                                                                        
Query: 287  cacagtcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtg 346
            | ||||| ||||| | |||||||||||| | |||||| |  |||| |||||  |||||||
Sbjct: 1033 cgcagtcaacccacagaagtctttgttcaacaggaactaggccatatgtaaccaagtgtg 974

                                                 
Query: 347  caaatggccacagcttccatncagcagtaagcatggg 383
            |||| ||||||| ||||||  | ||||||||||||||
Sbjct: 973  caaaaggccacaacttccagccggcagtaagcatggg 937
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>dbj|AK064786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B17, full
            insert sequence
          Length = 1318

 Score =  127 bits (64), Expect = 4e-26
 Identities = 133/157 (84%)
 Strand = Plus / Minus

                                                                        
Query: 227  tccttgcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcga 286
            |||||||||||||||||||||| |||||||||||||  || || ||||||||||| || |
Sbjct: 1093 tccttgcttcagatttctcgttggagtaagttgacagtattgtaacccagattaactcca 1034

                                                                        
Query: 287  cacagtcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtg 346
            | ||||| ||||| | |||||||||||| | |||||| |  |||| |||||  |||||||
Sbjct: 1033 cgcagtcaacccacagaagtctttgttcaacaggaactaggccatatgtaaccaagtgtg 974

                                                 
Query: 347  caaatggccacagcttccatncagcagtaagcatggg 383
            |||| ||||||| ||||||  | ||||||||||||||
Sbjct: 973  caaaaggccacaacttccagccggcagtaagcatggg 937
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>gb|AY109070.1| Zea mays PCO136780 mRNA sequence
          Length = 706

 Score =  127 bits (64), Expect = 4e-26
 Identities = 133/157 (84%)
 Strand = Plus / Minus

                                                                       
Query: 227 tccttgcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcga 286
           ||||||| || || || ||||| ||||| || ||||| || ||||||||||  |  || |
Sbjct: 498 tccttgcctctgacttttcgtttgagtacgtcgacaatattgtgacccagacaagctcca 439

                                                                       
Query: 287 cacagtcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtg 346
           ||||||||||||| | ||||||||| || | |||||||||||||| ||||||||||||||
Sbjct: 438 cacagtcgacccatagaagtctttgctcaacaggaaccacaccatatgtaattaagtgtg 379

                                                
Query: 347 caaatggccacagcttccatncagcagtaagcatggg 383
           |||| ||||||| ||||||| |||| |||||||||||
Sbjct: 378 caaaaggccacaacttccatccagcggtaagcatggg 342
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>gb|BT018600.1| Zea mays clone EL01N0449B06.d mRNA sequence
          Length = 1555

 Score =  113 bits (57), Expect = 5e-22
 Identities = 87/98 (88%)
 Strand = Plus / Minus

                                                                        
Query: 286  acacagtcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgt 345
            |||||||||||||| | ||||||||| || | |||||||||||||| ||||| |||||| 
Sbjct: 1190 acacagtcgacccatagaagtctttgctcaacaggaaccacaccatatgtaactaagtgc 1131

                                                  
Query: 346  gcaaatggccacagcttccatncagcagtaagcatggg 383
            ||||| ||||||| ||||||| ||||||||||||||||
Sbjct: 1130 gcaaaaggccacaacttccatccagcagtaagcatggg 1093
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>gb|AY108423.1| Zea mays PCO136781 mRNA sequence
          Length = 1394

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                       
Query: 289 cagtcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtgca 348
           ||||||||||| | ||||||||| || | |||||||||||||| ||||| |||||| |||
Sbjct: 871 cagtcgacccatagaagtctttgctcaacaggaaccacaccatatgtaactaagtgcgca 812

                                              
Query: 349 aatggccacagcttccatncagcagtaagcatggg 383
           || ||||||| ||||||| |||| |||||||||||
Sbjct: 811 aaaggccacaacttccatccagctgtaagcatggg 777
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>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence,
           complete sequence
          Length = 190055

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                       
Query: 271 acccagattaattcgacacagtcgacccaganaagtctttgttcgataggaaccacacca 330
           ||||||||||| || || ||||| ||||| | |||||||||||| | |||||| |  |||
Sbjct: 872 acccagattaactccacgcagtcaacccacagaagtctttgttcaacaggaactaggcca 813

                                              
Query: 331 tntgtaattaagtgtgcaaatggccacagcttcca 365
           | |||||  ||||||||||| ||||||| ||||||
Sbjct: 812 tatgtaaccaagtgtgcaaaaggccacaacttcca 778



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 227  tccttgcttcagatttctcgttcgagtaa 255
            |||||||||||||||||||||| ||||||
Sbjct: 1031 tccttgcttcagatttctcgttggagtaa 1003
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                            
Query: 271      acccagattaattcgacacagtcgacccaganaagtctttgttcgataggaaccacacca 330
                ||||||||||| || || ||||| ||||| | |||||||||||| | |||||| |  |||
Sbjct: 21307961 acccagattaactccacgcagtcaacccacagaagtctttgttcaacaggaactaggcca 21307902

                                                   
Query: 331      tntgtaattaagtgtgcaaatggccacagcttcca 365
                | |||||  ||||||||||| ||||||| ||||||
Sbjct: 21307901 tatgtaaccaagtgtgcaaaaggccacaacttcca 21307867



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 227      tccttgcttcagatttctcgttcgagtaa 255
                |||||||||||||||||||||| ||||||
Sbjct: 21308120 tccttgcttcagatttctcgttggagtaa 21308092
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>gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic sequence, complete
              sequence
          Length = 174910

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                          
Query: 271    acccagattaattcgacacagtcgacccaganaagtctttgttcgataggaaccacacca 330
              ||||||||||| || || ||||| ||||| | |||||||||||| | |||||| |  |||
Sbjct: 163876 acccagattaactccacgcagtcaacccacagaagtctttgttcaacaggaactaggcca 163817

                                                 
Query: 331    tntgtaattaagtgtgcaaatggccacagcttcca 365
              | |||||  ||||||||||| ||||||| ||||||
Sbjct: 163816 tatgtaaccaagtgtgcaaaaggccacaacttcca 163782



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 227    tccttgcttcagatttctcgttcgagtaa 255
              |||||||||||||||||||||| ||||||
Sbjct: 164035 tccttgcttcagatttctcgttggagtaa 164007
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                           
Query: 271     acccagattaattcgacacagtcgacccaganaagtctttgttcgataggaaccacacca 330
               ||||||||||| || || ||||| ||||| | |||||||||||| | |||||| |  |||
Sbjct: 8591807 acccagattaactccacgcagtcaacccacagaagtctttgttcaacaggaactaggcca 8591748

                                                  
Query: 331     tntgtaattaagtgtgcaaatggccacagcttcca 365
               | |||||  ||||||||||| ||||||| ||||||
Sbjct: 8591747 tatgtaaccaagtgtgcaaaaggccacaacttcca 8591713



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                            
Query: 227     tccttgcttcagatttctcgttcgagtaa 255
               |||||||||||||||||||||| ||||||
Sbjct: 8591966 tccttgcttcagatttctcgttggagtaa 8591938
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                            
Query: 271      acccagattaattcgacacagtcgacccaganaagtctttgttcgataggaaccacacca 330
                ||||||||||| || || ||||| ||||| | |||||||||||| | |||||| |  |||
Sbjct: 21300990 acccagattaactccacgcagtcaacccacagaagtctttgttcaacaggaactaggcca 21300931

                                                   
Query: 331      tntgtaattaagtgtgcaaatggccacagcttcca 365
                | |||||  ||||||||||| ||||||| ||||||
Sbjct: 21300930 tatgtaaccaagtgtgcaaaaggccacaacttcca 21300896



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 227      tccttgcttcagatttctcgttcgagtaa 255
                |||||||||||||||||||||| ||||||
Sbjct: 21301149 tccttgcttcagatttctcgttggagtaa 21301121
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>dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0079G12
          Length = 139796

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                          
Query: 271    acccagattaattcgacacagtcgacccaganaagtctttgttcgataggaaccacacca 330
              ||||||||||| || || ||||| ||||| | |||||||||||| | |||||| |  |||
Sbjct: 113017 acccagattaactccacgcagtcaacccacagaagtctttgttcaacaggaactaggcca 112958

                                                 
Query: 331    tntgtaattaagtgtgcaaatggccacagcttcca 365
              | |||||  ||||||||||| ||||||| ||||||
Sbjct: 112957 tatgtaaccaagtgtgcaaaaggccacaacttcca 112923



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 227    tccttgcttcagatttctcgttcgagtaa 255
              |||||||||||||||||||||| ||||||
Sbjct: 113176 tccttgcttcagatttctcgttggagtaa 113148
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>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0057D11
          Length = 190790

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                         
Query: 271   acccagattaattcgacacagtcgacccaganaagtctttgttcgataggaaccacacca 330
             ||||||||||| || || ||||| ||||| | |||||||||||| | |||||| |  |||
Sbjct: 21603 acccagattaactccacgcagtcaacccacagaagtctttgttcaacaggaactaggcca 21544

                                                
Query: 331   tntgtaattaagtgtgcaaatggccacagcttcca 365
             | |||||  ||||||||||| ||||||| ||||||
Sbjct: 21543 tatgtaaccaagtgtgcaaaaggccacaacttcca 21509



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 227   tccttgcttcagatttctcgttcgagtaa 255
             |||||||||||||||||||||| ||||||
Sbjct: 21762 tccttgcttcagatttctcgttggagtaa 21734
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>gb|BT014218.1| Lycopersicon esculentum clone 133396F, mRNA sequence
          Length = 1477

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 286  acacagtcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgt 345
            |||||||| ||||| | ||| |||||||| |  ||||  ||||||| ||||||||  || 
Sbjct: 1065 acacagtcaacccaaagaagcctttgttcaaccggaattacaccatatgtaattagatga 1006

                                
Query: 346  gcaaatggccacagcttcca 365
            ||||||||||||||||||||
Sbjct: 1005 gcaaatggccacagcttcca 986
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>ref|NM_104165.2| Arabidopsis thaliana unknown protein AT1G52870 transcript variant
            AT1G52870.1 mRNA, complete cds
          Length = 1391

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 106/134 (79%)
 Strand = Plus / Minus

                                                                        
Query: 232  gcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcgacacag 291
            ||||| |||||||||||||||||||| || |  || |||||||| || |  || || || 
Sbjct: 1136 gcttctgatttctcgttcgagtaagtcgaaagtatagtgacccaaataagctccacgcaa 1077

                                                                        
Query: 292  tcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtgcaaat 351
            || ||||||| ||||| |||||| |  || |||| ||| | ||| || || || ||||||
Sbjct: 1076 tctacccagagaagtcgttgttctactgggaccaaaccgtatgtgatcaaatgagcaaat 1017

                          
Query: 352  ggccacagcttcca 365
            ||||| ||||||||
Sbjct: 1016 ggccaaagcttcca 1003
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>ref|NM_104164.3| Arabidopsis thaliana unknown protein AT1G52870 transcript variant
            AT1G52870.2 mRNA, complete cds
          Length = 1395

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 106/134 (79%)
 Strand = Plus / Minus

                                                                        
Query: 232  gcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcgacacag 291
            ||||| |||||||||||||||||||| || |  || |||||||| || |  || || || 
Sbjct: 1140 gcttctgatttctcgttcgagtaagtcgaaagtatagtgacccaaataagctccacgcaa 1081

                                                                        
Query: 292  tcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtgcaaat 351
            || ||||||| ||||| |||||| |  || |||| ||| | ||| || || || ||||||
Sbjct: 1080 tctacccagagaagtcgttgttctactgggaccaaaccgtatgtgatcaaatgagcaaat 1021

                          
Query: 352  ggccacagcttcca 365
            ||||| ||||||||
Sbjct: 1020 ggccaaagcttcca 1007
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>gb|AF385726.1|AF385726 Arabidopsis thaliana At1g52870/F14G24_14 mRNA, complete cds
          Length = 1353

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 106/134 (79%)
 Strand = Plus / Minus

                                                                        
Query: 232  gcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcgacacag 291
            ||||| |||||||||||||||||||| || |  || |||||||| || |  || || || 
Sbjct: 1098 gcttctgatttctcgttcgagtaagtcgaaagtatagtgacccaaataagctccacgcaa 1039

                                                                        
Query: 292  tcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtgcaaat 351
            || ||||||| ||||| |||||| |  || |||| ||| | ||| || || || ||||||
Sbjct: 1038 tctacccagagaagtcgttgttctactgggaccaaaccgtatgtgatcaaatgagcaaat 979

                          
Query: 352  ggccacagcttcca 365
            ||||| ||||||||
Sbjct: 978  ggccaaagcttcca 965
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>emb|BX814282.1|CNS0AC8U Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB66ZA06 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1279

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 106/134 (79%)
 Strand = Plus / Minus

                                                                        
Query: 232  gcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcgacacag 291
            ||||| |||||||||||||||||||| || |  || |||||||| || |  || || || 
Sbjct: 1063 gcttctgatttctcgttcgagtaagtcgaaagtatagtgacccaaataagctccacgcaa 1004

                                                                        
Query: 292  tcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtgcaaat 351
            || ||||||| ||||| |||||| |  || |||| ||| | ||| || || || ||||||
Sbjct: 1003 tctacccagagaagtcgttgttctactgggaccaaaccgtatgtcatcaaatgagcaaat 944

                          
Query: 352  ggccacagcttcca 365
            ||||| ||||||||
Sbjct: 943  ggccaaagcttcca 930
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>emb|BX815151.1|CNS0ABBR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS38ZE12 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1301

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 106/134 (79%)
 Strand = Plus / Minus

                                                                        
Query: 232  gcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcgacacag 291
            ||||| |||||||||||||||||||| || |  || |||||||| || |  || || || 
Sbjct: 1090 gcttctgatttctcgttcgagtaagtggaaagtatagtgacccaaataagctccacgcaa 1031

                                                                        
Query: 292  tcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtgcaaat 351
            || ||||||| ||||| |||||| |  || |||| ||| | ||| || || || ||||||
Sbjct: 1030 tctacccagagaagtcgttgttctactgggaccaaaccgtatgtgatcaaatgagcaaat 971

                          
Query: 352  ggccacagcttcca 365
            ||||| ||||||||
Sbjct: 970  ggccaaagcttcca 957
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>emb|BX815599.1|CNS0AAGX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS76ZA01 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1335

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 106/134 (79%)
 Strand = Plus / Minus

                                                                        
Query: 232  gcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcgacacag 291
            ||||| |||||||||||||||||||| || |  || |||||||| || |  || || || 
Sbjct: 1083 gcttctgatttctcgttcgagtaagtcgaaagtatagtgacccaaatgagctccacgcaa 1024

                                                                        
Query: 292  tcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtgcaaat 351
            || ||||||| ||||| |||||| |  || |||| ||| | ||| || || || ||||||
Sbjct: 1023 tctacccagagaagtcgttgttctactgggaccaaaccgtatgtgatcaaatgagcaaat 964

                          
Query: 352  ggccacagcttcca 365
            ||||| ||||||||
Sbjct: 963  ggccaaagcttcca 950
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>gb|AY085076.1| Arabidopsis thaliana clone 126586 mRNA, complete sequence
          Length = 1335

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 106/134 (79%)
 Strand = Plus / Minus

                                                                        
Query: 232  gcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcgacacag 291
            ||||| |||||||||||||||||||| || |  || |||||||| || |  || || || 
Sbjct: 1129 gcttctgatttctcgttcgagtaagtcgaaagtatagtgacccaaataagctccacgcaa 1070

                                                                        
Query: 292  tcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtgcaaat 351
            || ||||||| ||||| |||||| |  || |||| ||| | ||| || || || ||||||
Sbjct: 1069 tctacccagagaagtcgttgttctactgggaccaaaccgtatgtgatcaaatgagcaaat 1010

                          
Query: 352  ggccacagcttcca 365
            ||||| ||||||||
Sbjct: 1009 ggccaaagcttcca 996
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>gb|BT002228.1| Arabidopsis thaliana At1g52870/F14G24_14 mRNA, complete cds
          Length = 1101

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 106/134 (79%)
 Strand = Plus / Minus

                                                                        
Query: 232  gcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcgacacag 291
            ||||| |||||||||||||||||||| || |  || |||||||| || |  || || || 
Sbjct: 1031 gcttctgatttctcgttcgagtaagtcgaaagtatagtgacccaaataagctccacgcaa 972

                                                                        
Query: 292  tcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtgcaaat 351
            || ||||||| ||||| |||||| |  || |||| ||| | ||| || || || ||||||
Sbjct: 971  tctacccagagaagtcgttgttctactgggaccaaaccgtatgtgatcaaatgagcaaat 912

                          
Query: 352  ggccacagcttcca 365
            ||||| ||||||||
Sbjct: 911  ggccaaagcttcca 898
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>emb|BX815481.1|CNS0ABCN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS65ZB12 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1294

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 232  gcttcagatttctcgttcgagtaagt 257
            ||||| ||||||||||||||||||||
Sbjct: 1083 gcttctgatttctcgttcgagtaagt 1058
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>ref|NM_116579.3| Arabidopsis thaliana unknown protein AT4G03410 transcript variant
            AT4G03410.1 mRNA, complete cds
          Length = 1768

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 235  tcagatttctcgttcgagtaagttgacaagatggtgaccca 275
            |||| ||| ||||||||||||||||| || || ||||||||
Sbjct: 1641 tcagctttttcgttcgagtaagttgataatatagtgaccca 1601
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>ref|NM_202776.1| Arabidopsis thaliana unknown protein AT4G03410 transcript variant
            AT4G03410.2 mRNA, complete cds
          Length = 1883

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 235  tcagatttctcgttcgagtaagttgacaagatggtgaccca 275
            |||| ||| ||||||||||||||||| || || ||||||||
Sbjct: 1641 tcagctttttcgttcgagtaagttgataatatagtgaccca 1601
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>gb|BT015863.1| Arabidopsis thaliana At4g03410 mRNA, complete cds
          Length = 954

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 235 tcagatttctcgttcgagtaagttgacaagatggtgaccca 275
           |||| ||| ||||||||||||||||| || || ||||||||
Sbjct: 902 tcagctttttcgttcgagtaagttgataatatagtgaccca 862
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>gb|DQ146945.1| Pseudomonas fluorescens strain F protease (aprX) gene, complete cds
          Length = 1607

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 304 agtctttgttcgataggaacc 324
           |||||||||||||||||||||
Sbjct: 47  agtctttgttcgataggaacc 27
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>gb|AY298902.1| Pseudomonas fluorescens strain A506 extracellular alkaline
           metalloprotease (aprX) gene, complete cds
          Length = 2431

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 304 agtctttgttcgataggaacc 324
           |||||||||||||||||||||
Sbjct: 840 agtctttgttcgataggaacc 820
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>gb|BT008684.1| Arabidopsis thaliana clone RAFL21-17-H08 (R51095) unknown protein
           (At4g03410) mRNA, complete cds
          Length = 1179

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 235 tcagatttctcgttcgagtaagttgacaagatggtgaccca 275
           |||| ||| ||||||||||||||||| || || ||||||||
Sbjct: 956 tcagctttttcgttcgagtaagttgataatatagtgaccca 916
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>gb|AC090220.13| Homo sapiens chromosome 18, clone RP11-712P20, complete sequence
          Length = 194334

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     atttctttttcgttttgtttg 21
             |||||||||||||||||||||
Sbjct: 83356 atttctttttcgttttgtttg 83376
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>gb|AC099010.1| Drosophila melanogaster, chromosome 2L, region 27B-27C, BAC clone
             BACR20B21, complete sequence
          Length = 166512

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 7     ttttcgttttgtttggccagc 27
             |||||||||||||||||||||
Sbjct: 51335 ttttcgttttgtttggccagc 51355
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>gb|AC007977.12|AC007977 Drosophila melanogaster, chromosome 2L, region 27C-27C, BAC clone
             BACR13J07, complete sequence
          Length = 174287

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     ttttcgttttgtttggccagc 27
             |||||||||||||||||||||
Sbjct: 28351 ttttcgttttgtttggccagc 28331
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>emb|BX826658.1|CNS0A394 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB51ZG12 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1894

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 235  tcagatttctcgttcgagtaagttgacaagatggtgaccca 275
            |||| ||| ||||||||||||||||| || || ||||||||
Sbjct: 1643 tcagctttttcgttcgagtaagttgataatatagtgaccca 1603
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>emb|BX826703.1|CNS0A36O Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB56ZD08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1167

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 235 tcagatttctcgttcgagtaagttgacaagatggtgaccca 275
           |||| ||| ||||||||||||||||| || || ||||||||
Sbjct: 965 tcagctttttcgttcgagtaagttgataatatagtgaccca 925
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>gb|AE003615.3| Drosophila melanogaster chromosome 2L, section 24 of 83 of the complete
              sequence
          Length = 270751

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 7      ttttcgttttgtttggccagc 27
              |||||||||||||||||||||
Sbjct: 164845 ttttcgttttgtttggccagc 164825
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>gb|AC004277.1|AC004277 Drosophila melanogaster DNA sequence (P1 DS01321 (D143)), complete
            sequence
          Length = 82849

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 7    ttttcgttttgtttggccagc 27
            |||||||||||||||||||||
Sbjct: 9411 ttttcgttttgtttggccagc 9431
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>emb|AL671910.9| Mouse DNA sequence from clone RP23-245M12 on chromosome X, complete
              sequence
          Length = 141713

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 154    aaaacagcaaaaccatgaagt 174
              |||||||||||||||||||||
Sbjct: 107128 aaaacagcaaaaccatgaagt 107148
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>gb|AC008097.5| Drosophila melanogaster clone BACR20D06, complete sequence
          Length = 185670

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    ccaacataacgaagccggag 130
              ||||||||||||||||||||
Sbjct: 135933 ccaacataacgaagccggag 135952
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>gb|BT012319.1| Drosophila melanogaster AT29374 full insert cDNA
          Length = 1189

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 312 ttcgataggaaccacaccat 331
           ||||||||||||||||||||
Sbjct: 371 ttcgataggaaccacaccat 352
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>gb|AC115754.7| Mus musculus chromosome 12, clone RP23-34D20, complete sequence
          Length = 217173

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      tttctttttcgttttgtttg 21
              ||||||||||||||||||||
Sbjct: 112262 tttctttttcgttttgtttg 112281
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>ref|NM_166103.1| Drosophila melanogaster CG30466-RA (CG30466), mRNA
          Length = 1227

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 312 ttcgataggaaccacaccat 331
           ||||||||||||||||||||
Sbjct: 785 ttcgataggaaccacaccat 766
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>gb|AC166644.7| Mus musculus chromosome 1, clone RP23-375C6, complete sequence
          Length = 175851

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    gcaaaaccatgaagtatgtg 179
              ||||||||||||||||||||
Sbjct: 151070 gcaaaaccatgaagtatgtg 151089
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>gb|AC156568.3| Mus musculus BAC clone RP23-291D3 from chromosome 12, complete sequence
          Length = 224350

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 152   ataaaacagcaaaaccatgaagta 175
             ||||||||||||||||| ||||||
Sbjct: 76991 ataaaacagcaaaaccaggaagta 76968
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>gb|AC019018.9|AC019018 Arabidopsis thaliana chromosome 1 BAC F14G24 genomic sequence, complete
             sequence
          Length = 126253

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 232   gcttcagatttctcgttcgagtaa 255
             ||||| ||||||||||||||||||
Sbjct: 56605 gcttctgatttctcgttcgagtaa 56582
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>gb|AC016751.7| Homo sapiens BAC clone RP11-504O20 from 2, complete sequence
          Length = 176379

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     gttttgtttggccagcacaa 31
              ||||||||||||||||||||
Sbjct: 113662 gttttgtttggccagcacaa 113643
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>gb|AY220758.1| Homo sapiens ataxia telangiectasia mutated (includes complementation
              groups A, C and D) (ATM) gene, partial cds
          Length = 115612

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 169    tgaagtatgtgctntctggagtt 191
              ||||||||||||| |||||||||
Sbjct: 106036 tgaagtatgtgctgtctggagtt 106058
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>gb|AC008369.1|AC008369 Drosophila melanogaster, chromosome 2R, region 52A4-52B4, P1 clones
             BACR48C01 and DS08592, complete sequence
          Length = 192366

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   ttcgataggaaccacaccat 331
             ||||||||||||||||||||
Sbjct: 85816 ttcgataggaaccacaccat 85797
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>gb|AE003810.3| Drosophila melanogaster chromosome 2R, section 40 of 73 of the complete
              sequence
          Length = 271178

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    ttcgataggaaccacaccat 331
              ||||||||||||||||||||
Sbjct: 163174 ttcgataggaaccacaccat 163155
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>gb|AE003793.3| Drosophila melanogaster chromosome 2R, section 57 of 73 of the complete
             sequence
          Length = 271902

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   ccaacataacgaagccggag 130
             ||||||||||||||||||||
Sbjct: 78426 ccaacataacgaagccggag 78445
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>gb|AF123310.1|AF123310 Arabidopsis thaliana NAC domain protein NAM gene, complete cds
          Length = 4669

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 232  gcttcagatttctcgttcgagtaa 255
            ||||| ||||||||||||||||||
Sbjct: 4454 gcttctgatttctcgttcgagtaa 4477
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>dbj|AP001925.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-241D13, complete
              sequence
          Length = 180163

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 169    tgaagtatgtgctntctggagtt 191
              ||||||||||||| |||||||||
Sbjct: 161292 tgaagtatgtgctgtctggagtt 161314
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>dbj|AP005718.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-415G10, complete
            sequence
          Length = 186104

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 169  tgaagtatgtgctntctggagtt 191
            ||||||||||||| |||||||||
Sbjct: 3360 tgaagtatgtgctgtctggagtt 3382
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>gb|AC120132.11| Mus musculus chromosome 6, clone RP23-105D1, complete sequence
          Length = 203185

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     tacaatttatacaatcccaa 114
              ||||||||||||||||||||
Sbjct: 100998 tacaatttatacaatcccaa 101017
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>dbj|AP000838.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-21A6, complete
             sequence
          Length = 109666

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 169   tgaagtatgtgctntctggagtt 191
             ||||||||||||| |||||||||
Sbjct: 50477 tgaagtatgtgctgtctggagtt 50499
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>gb|U82828.1|HSU82828 Homo sapiens ataxia telangiectasia (ATM) gene, complete cds
          Length = 184490

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 169    tgaagtatgtgctntctggagtt 191
              ||||||||||||| |||||||||
Sbjct: 114916 tgaagtatgtgctgtctggagtt 114938


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,811,971
Number of Sequences: 3902068
Number of extensions: 2811971
Number of successful extensions: 50187
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50053
Number of HSP's gapped (non-prelim): 126
length of query: 471
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 449
effective length of database: 17,147,199,772
effective search space: 7699092697628
effective search space used: 7699092697628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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