Clone Name | rbah61f17 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_463067.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1318 Score = 127 bits (64), Expect = 4e-26 Identities = 133/157 (84%) Strand = Plus / Minus Query: 227 tccttgcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcga 286 |||||||||||||||||||||| ||||||||||||| || || ||||||||||| || | Sbjct: 1093 tccttgcttcagatttctcgttggagtaagttgacagtattgtaacccagattaactcca 1034 Query: 287 cacagtcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtg 346 | ||||| ||||| | |||||||||||| | |||||| | |||| ||||| ||||||| Sbjct: 1033 cgcagtcaacccacagaagtctttgttcaacaggaactaggccatatgtaaccaagtgtg 974 Query: 347 caaatggccacagcttccatncagcagtaagcatggg 383 |||| ||||||| |||||| | |||||||||||||| Sbjct: 973 caaaaggccacaacttccagccggcagtaagcatggg 937
>dbj|AK099233.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098D10, full insert sequence Length = 1298 Score = 127 bits (64), Expect = 4e-26 Identities = 133/157 (84%) Strand = Plus / Minus Query: 227 tccttgcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcga 286 |||||||||||||||||||||| ||||||||||||| || || ||||||||||| || | Sbjct: 1093 tccttgcttcagatttctcgttggagtaagttgacagtattgtaacccagattaactcca 1034 Query: 287 cacagtcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtg 346 | ||||| ||||| | |||||||||||| | |||||| | |||| ||||| ||||||| Sbjct: 1033 cgcagtcaacccacagaagtctttgttcaacaggaactaggccatatgtaaccaagtgtg 974 Query: 347 caaatggccacagcttccatncagcagtaagcatggg 383 |||| ||||||| |||||| | |||||||||||||| Sbjct: 973 caaaaggccacaacttccagccggcagtaagcatggg 937
>dbj|AK064786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B17, full insert sequence Length = 1318 Score = 127 bits (64), Expect = 4e-26 Identities = 133/157 (84%) Strand = Plus / Minus Query: 227 tccttgcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcga 286 |||||||||||||||||||||| ||||||||||||| || || ||||||||||| || | Sbjct: 1093 tccttgcttcagatttctcgttggagtaagttgacagtattgtaacccagattaactcca 1034 Query: 287 cacagtcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtg 346 | ||||| ||||| | |||||||||||| | |||||| | |||| ||||| ||||||| Sbjct: 1033 cgcagtcaacccacagaagtctttgttcaacaggaactaggccatatgtaaccaagtgtg 974 Query: 347 caaatggccacagcttccatncagcagtaagcatggg 383 |||| ||||||| |||||| | |||||||||||||| Sbjct: 973 caaaaggccacaacttccagccggcagtaagcatggg 937
>gb|AY109070.1| Zea mays PCO136780 mRNA sequence Length = 706 Score = 127 bits (64), Expect = 4e-26 Identities = 133/157 (84%) Strand = Plus / Minus Query: 227 tccttgcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcga 286 ||||||| || || || ||||| ||||| || ||||| || |||||||||| | || | Sbjct: 498 tccttgcctctgacttttcgtttgagtacgtcgacaatattgtgacccagacaagctcca 439 Query: 287 cacagtcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtg 346 ||||||||||||| | ||||||||| || | |||||||||||||| |||||||||||||| Sbjct: 438 cacagtcgacccatagaagtctttgctcaacaggaaccacaccatatgtaattaagtgtg 379 Query: 347 caaatggccacagcttccatncagcagtaagcatggg 383 |||| ||||||| ||||||| |||| ||||||||||| Sbjct: 378 caaaaggccacaacttccatccagcggtaagcatggg 342
>gb|BT018600.1| Zea mays clone EL01N0449B06.d mRNA sequence Length = 1555 Score = 113 bits (57), Expect = 5e-22 Identities = 87/98 (88%) Strand = Plus / Minus Query: 286 acacagtcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgt 345 |||||||||||||| | ||||||||| || | |||||||||||||| ||||| |||||| Sbjct: 1190 acacagtcgacccatagaagtctttgctcaacaggaaccacaccatatgtaactaagtgc 1131 Query: 346 gcaaatggccacagcttccatncagcagtaagcatggg 383 ||||| ||||||| ||||||| |||||||||||||||| Sbjct: 1130 gcaaaaggccacaacttccatccagcagtaagcatggg 1093
>gb|AY108423.1| Zea mays PCO136781 mRNA sequence Length = 1394 Score = 99.6 bits (50), Expect = 8e-18 Identities = 83/95 (87%) Strand = Plus / Minus Query: 289 cagtcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtgca 348 ||||||||||| | ||||||||| || | |||||||||||||| ||||| |||||| ||| Sbjct: 871 cagtcgacccatagaagtctttgctcaacaggaaccacaccatatgtaactaagtgcgca 812 Query: 349 aatggccacagcttccatncagcagtaagcatggg 383 || ||||||| ||||||| |||| ||||||||||| Sbjct: 811 aaaggccacaacttccatccagctgtaagcatggg 777
>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence Length = 190055 Score = 65.9 bits (33), Expect = 1e-07 Identities = 79/95 (83%) Strand = Plus / Minus Query: 271 acccagattaattcgacacagtcgacccaganaagtctttgttcgataggaaccacacca 330 ||||||||||| || || ||||| ||||| | |||||||||||| | |||||| | ||| Sbjct: 872 acccagattaactccacgcagtcaacccacagaagtctttgttcaacaggaactaggcca 813 Query: 331 tntgtaattaagtgtgcaaatggccacagcttcca 365 | ||||| ||||||||||| ||||||| |||||| Sbjct: 812 tatgtaaccaagtgtgcaaaaggccacaacttcca 778 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 227 tccttgcttcagatttctcgttcgagtaa 255 |||||||||||||||||||||| |||||| Sbjct: 1031 tccttgcttcagatttctcgttggagtaa 1003
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 65.9 bits (33), Expect = 1e-07 Identities = 79/95 (83%) Strand = Plus / Minus Query: 271 acccagattaattcgacacagtcgacccaganaagtctttgttcgataggaaccacacca 330 ||||||||||| || || ||||| ||||| | |||||||||||| | |||||| | ||| Sbjct: 21307961 acccagattaactccacgcagtcaacccacagaagtctttgttcaacaggaactaggcca 21307902 Query: 331 tntgtaattaagtgtgcaaatggccacagcttcca 365 | ||||| ||||||||||| ||||||| |||||| Sbjct: 21307901 tatgtaaccaagtgtgcaaaaggccacaacttcca 21307867 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 227 tccttgcttcagatttctcgttcgagtaa 255 |||||||||||||||||||||| |||||| Sbjct: 21308120 tccttgcttcagatttctcgttggagtaa 21308092
>gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic sequence, complete sequence Length = 174910 Score = 65.9 bits (33), Expect = 1e-07 Identities = 79/95 (83%) Strand = Plus / Minus Query: 271 acccagattaattcgacacagtcgacccaganaagtctttgttcgataggaaccacacca 330 ||||||||||| || || ||||| ||||| | |||||||||||| | |||||| | ||| Sbjct: 163876 acccagattaactccacgcagtcaacccacagaagtctttgttcaacaggaactaggcca 163817 Query: 331 tntgtaattaagtgtgcaaatggccacagcttcca 365 | ||||| ||||||||||| ||||||| |||||| Sbjct: 163816 tatgtaaccaagtgtgcaaaaggccacaacttcca 163782 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 227 tccttgcttcagatttctcgttcgagtaa 255 |||||||||||||||||||||| |||||| Sbjct: 164035 tccttgcttcagatttctcgttggagtaa 164007
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 65.9 bits (33), Expect = 1e-07 Identities = 79/95 (83%) Strand = Plus / Minus Query: 271 acccagattaattcgacacagtcgacccaganaagtctttgttcgataggaaccacacca 330 ||||||||||| || || ||||| ||||| | |||||||||||| | |||||| | ||| Sbjct: 8591807 acccagattaactccacgcagtcaacccacagaagtctttgttcaacaggaactaggcca 8591748 Query: 331 tntgtaattaagtgtgcaaatggccacagcttcca 365 | ||||| ||||||||||| ||||||| |||||| Sbjct: 8591747 tatgtaaccaagtgtgcaaaaggccacaacttcca 8591713 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 227 tccttgcttcagatttctcgttcgagtaa 255 |||||||||||||||||||||| |||||| Sbjct: 8591966 tccttgcttcagatttctcgttggagtaa 8591938
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 65.9 bits (33), Expect = 1e-07 Identities = 79/95 (83%) Strand = Plus / Minus Query: 271 acccagattaattcgacacagtcgacccaganaagtctttgttcgataggaaccacacca 330 ||||||||||| || || ||||| ||||| | |||||||||||| | |||||| | ||| Sbjct: 21300990 acccagattaactccacgcagtcaacccacagaagtctttgttcaacaggaactaggcca 21300931 Query: 331 tntgtaattaagtgtgcaaatggccacagcttcca 365 | ||||| ||||||||||| ||||||| |||||| Sbjct: 21300930 tatgtaaccaagtgtgcaaaaggccacaacttcca 21300896 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 227 tccttgcttcagatttctcgttcgagtaa 255 |||||||||||||||||||||| |||||| Sbjct: 21301149 tccttgcttcagatttctcgttggagtaa 21301121
>dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0079G12 Length = 139796 Score = 65.9 bits (33), Expect = 1e-07 Identities = 79/95 (83%) Strand = Plus / Minus Query: 271 acccagattaattcgacacagtcgacccaganaagtctttgttcgataggaaccacacca 330 ||||||||||| || || ||||| ||||| | |||||||||||| | |||||| | ||| Sbjct: 113017 acccagattaactccacgcagtcaacccacagaagtctttgttcaacaggaactaggcca 112958 Query: 331 tntgtaattaagtgtgcaaatggccacagcttcca 365 | ||||| ||||||||||| ||||||| |||||| Sbjct: 112957 tatgtaaccaagtgtgcaaaaggccacaacttcca 112923 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 227 tccttgcttcagatttctcgttcgagtaa 255 |||||||||||||||||||||| |||||| Sbjct: 113176 tccttgcttcagatttctcgttggagtaa 113148
>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0057D11 Length = 190790 Score = 65.9 bits (33), Expect = 1e-07 Identities = 79/95 (83%) Strand = Plus / Minus Query: 271 acccagattaattcgacacagtcgacccaganaagtctttgttcgataggaaccacacca 330 ||||||||||| || || ||||| ||||| | |||||||||||| | |||||| | ||| Sbjct: 21603 acccagattaactccacgcagtcaacccacagaagtctttgttcaacaggaactaggcca 21544 Query: 331 tntgtaattaagtgtgcaaatggccacagcttcca 365 | ||||| ||||||||||| ||||||| |||||| Sbjct: 21543 tatgtaaccaagtgtgcaaaaggccacaacttcca 21509 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 227 tccttgcttcagatttctcgttcgagtaa 255 |||||||||||||||||||||| |||||| Sbjct: 21762 tccttgcttcagatttctcgttggagtaa 21734
>gb|BT014218.1| Lycopersicon esculentum clone 133396F, mRNA sequence Length = 1477 Score = 60.0 bits (30), Expect = 7e-06 Identities = 67/80 (83%) Strand = Plus / Minus Query: 286 acacagtcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgt 345 |||||||| ||||| | ||| |||||||| | |||| ||||||| |||||||| || Sbjct: 1065 acacagtcaacccaaagaagcctttgttcaaccggaattacaccatatgtaattagatga 1006 Query: 346 gcaaatggccacagcttcca 365 |||||||||||||||||||| Sbjct: 1005 gcaaatggccacagcttcca 986
>ref|NM_104165.2| Arabidopsis thaliana unknown protein AT1G52870 transcript variant AT1G52870.1 mRNA, complete cds Length = 1391 Score = 48.1 bits (24), Expect = 0.026 Identities = 106/134 (79%) Strand = Plus / Minus Query: 232 gcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcgacacag 291 ||||| |||||||||||||||||||| || | || |||||||| || | || || || Sbjct: 1136 gcttctgatttctcgttcgagtaagtcgaaagtatagtgacccaaataagctccacgcaa 1077 Query: 292 tcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtgcaaat 351 || ||||||| ||||| |||||| | || |||| ||| | ||| || || || |||||| Sbjct: 1076 tctacccagagaagtcgttgttctactgggaccaaaccgtatgtgatcaaatgagcaaat 1017 Query: 352 ggccacagcttcca 365 ||||| |||||||| Sbjct: 1016 ggccaaagcttcca 1003
>ref|NM_104164.3| Arabidopsis thaliana unknown protein AT1G52870 transcript variant AT1G52870.2 mRNA, complete cds Length = 1395 Score = 48.1 bits (24), Expect = 0.026 Identities = 106/134 (79%) Strand = Plus / Minus Query: 232 gcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcgacacag 291 ||||| |||||||||||||||||||| || | || |||||||| || | || || || Sbjct: 1140 gcttctgatttctcgttcgagtaagtcgaaagtatagtgacccaaataagctccacgcaa 1081 Query: 292 tcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtgcaaat 351 || ||||||| ||||| |||||| | || |||| ||| | ||| || || || |||||| Sbjct: 1080 tctacccagagaagtcgttgttctactgggaccaaaccgtatgtgatcaaatgagcaaat 1021 Query: 352 ggccacagcttcca 365 ||||| |||||||| Sbjct: 1020 ggccaaagcttcca 1007
>gb|AF385726.1|AF385726 Arabidopsis thaliana At1g52870/F14G24_14 mRNA, complete cds Length = 1353 Score = 48.1 bits (24), Expect = 0.026 Identities = 106/134 (79%) Strand = Plus / Minus Query: 232 gcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcgacacag 291 ||||| |||||||||||||||||||| || | || |||||||| || | || || || Sbjct: 1098 gcttctgatttctcgttcgagtaagtcgaaagtatagtgacccaaataagctccacgcaa 1039 Query: 292 tcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtgcaaat 351 || ||||||| ||||| |||||| | || |||| ||| | ||| || || || |||||| Sbjct: 1038 tctacccagagaagtcgttgttctactgggaccaaaccgtatgtgatcaaatgagcaaat 979 Query: 352 ggccacagcttcca 365 ||||| |||||||| Sbjct: 978 ggccaaagcttcca 965
>emb|BX814282.1|CNS0AC8U Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB66ZA06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1279 Score = 48.1 bits (24), Expect = 0.026 Identities = 106/134 (79%) Strand = Plus / Minus Query: 232 gcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcgacacag 291 ||||| |||||||||||||||||||| || | || |||||||| || | || || || Sbjct: 1063 gcttctgatttctcgttcgagtaagtcgaaagtatagtgacccaaataagctccacgcaa 1004 Query: 292 tcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtgcaaat 351 || ||||||| ||||| |||||| | || |||| ||| | ||| || || || |||||| Sbjct: 1003 tctacccagagaagtcgttgttctactgggaccaaaccgtatgtcatcaaatgagcaaat 944 Query: 352 ggccacagcttcca 365 ||||| |||||||| Sbjct: 943 ggccaaagcttcca 930
>emb|BX815151.1|CNS0ABBR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS38ZE12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1301 Score = 48.1 bits (24), Expect = 0.026 Identities = 106/134 (79%) Strand = Plus / Minus Query: 232 gcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcgacacag 291 ||||| |||||||||||||||||||| || | || |||||||| || | || || || Sbjct: 1090 gcttctgatttctcgttcgagtaagtggaaagtatagtgacccaaataagctccacgcaa 1031 Query: 292 tcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtgcaaat 351 || ||||||| ||||| |||||| | || |||| ||| | ||| || || || |||||| Sbjct: 1030 tctacccagagaagtcgttgttctactgggaccaaaccgtatgtgatcaaatgagcaaat 971 Query: 352 ggccacagcttcca 365 ||||| |||||||| Sbjct: 970 ggccaaagcttcca 957
>emb|BX815599.1|CNS0AAGX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS76ZA01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1335 Score = 48.1 bits (24), Expect = 0.026 Identities = 106/134 (79%) Strand = Plus / Minus Query: 232 gcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcgacacag 291 ||||| |||||||||||||||||||| || | || |||||||| || | || || || Sbjct: 1083 gcttctgatttctcgttcgagtaagtcgaaagtatagtgacccaaatgagctccacgcaa 1024 Query: 292 tcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtgcaaat 351 || ||||||| ||||| |||||| | || |||| ||| | ||| || || || |||||| Sbjct: 1023 tctacccagagaagtcgttgttctactgggaccaaaccgtatgtgatcaaatgagcaaat 964 Query: 352 ggccacagcttcca 365 ||||| |||||||| Sbjct: 963 ggccaaagcttcca 950
>gb|AY085076.1| Arabidopsis thaliana clone 126586 mRNA, complete sequence Length = 1335 Score = 48.1 bits (24), Expect = 0.026 Identities = 106/134 (79%) Strand = Plus / Minus Query: 232 gcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcgacacag 291 ||||| |||||||||||||||||||| || | || |||||||| || | || || || Sbjct: 1129 gcttctgatttctcgttcgagtaagtcgaaagtatagtgacccaaataagctccacgcaa 1070 Query: 292 tcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtgcaaat 351 || ||||||| ||||| |||||| | || |||| ||| | ||| || || || |||||| Sbjct: 1069 tctacccagagaagtcgttgttctactgggaccaaaccgtatgtgatcaaatgagcaaat 1010 Query: 352 ggccacagcttcca 365 ||||| |||||||| Sbjct: 1009 ggccaaagcttcca 996
>gb|BT002228.1| Arabidopsis thaliana At1g52870/F14G24_14 mRNA, complete cds Length = 1101 Score = 48.1 bits (24), Expect = 0.026 Identities = 106/134 (79%) Strand = Plus / Minus Query: 232 gcttcagatttctcgttcgagtaagttgacaagatggtgacccagattaattcgacacag 291 ||||| |||||||||||||||||||| || | || |||||||| || | || || || Sbjct: 1031 gcttctgatttctcgttcgagtaagtcgaaagtatagtgacccaaataagctccacgcaa 972 Query: 292 tcgacccaganaagtctttgttcgataggaaccacaccatntgtaattaagtgtgcaaat 351 || ||||||| ||||| |||||| | || |||| ||| | ||| || || || |||||| Sbjct: 971 tctacccagagaagtcgttgttctactgggaccaaaccgtatgtgatcaaatgagcaaat 912 Query: 352 ggccacagcttcca 365 ||||| |||||||| Sbjct: 911 ggccaaagcttcca 898
>emb|BX815481.1|CNS0ABCN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS65ZB12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1294 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 232 gcttcagatttctcgttcgagtaagt 257 ||||| |||||||||||||||||||| Sbjct: 1083 gcttctgatttctcgttcgagtaagt 1058
>ref|NM_116579.3| Arabidopsis thaliana unknown protein AT4G03410 transcript variant AT4G03410.1 mRNA, complete cds Length = 1768 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 235 tcagatttctcgttcgagtaagttgacaagatggtgaccca 275 |||| ||| ||||||||||||||||| || || |||||||| Sbjct: 1641 tcagctttttcgttcgagtaagttgataatatagtgaccca 1601
>ref|NM_202776.1| Arabidopsis thaliana unknown protein AT4G03410 transcript variant AT4G03410.2 mRNA, complete cds Length = 1883 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 235 tcagatttctcgttcgagtaagttgacaagatggtgaccca 275 |||| ||| ||||||||||||||||| || || |||||||| Sbjct: 1641 tcagctttttcgttcgagtaagttgataatatagtgaccca 1601
>gb|BT015863.1| Arabidopsis thaliana At4g03410 mRNA, complete cds Length = 954 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 235 tcagatttctcgttcgagtaagttgacaagatggtgaccca 275 |||| ||| ||||||||||||||||| || || |||||||| Sbjct: 902 tcagctttttcgttcgagtaagttgataatatagtgaccca 862
>gb|DQ146945.1| Pseudomonas fluorescens strain F protease (aprX) gene, complete cds Length = 1607 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 agtctttgttcgataggaacc 324 ||||||||||||||||||||| Sbjct: 47 agtctttgttcgataggaacc 27
>gb|AY298902.1| Pseudomonas fluorescens strain A506 extracellular alkaline metalloprotease (aprX) gene, complete cds Length = 2431 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 agtctttgttcgataggaacc 324 ||||||||||||||||||||| Sbjct: 840 agtctttgttcgataggaacc 820
>gb|BT008684.1| Arabidopsis thaliana clone RAFL21-17-H08 (R51095) unknown protein (At4g03410) mRNA, complete cds Length = 1179 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 235 tcagatttctcgttcgagtaagttgacaagatggtgaccca 275 |||| ||| ||||||||||||||||| || || |||||||| Sbjct: 956 tcagctttttcgttcgagtaagttgataatatagtgaccca 916
>gb|AC090220.13| Homo sapiens chromosome 18, clone RP11-712P20, complete sequence Length = 194334 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 atttctttttcgttttgtttg 21 ||||||||||||||||||||| Sbjct: 83356 atttctttttcgttttgtttg 83376
>gb|AC099010.1| Drosophila melanogaster, chromosome 2L, region 27B-27C, BAC clone BACR20B21, complete sequence Length = 166512 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 ttttcgttttgtttggccagc 27 ||||||||||||||||||||| Sbjct: 51335 ttttcgttttgtttggccagc 51355
>gb|AC007977.12|AC007977 Drosophila melanogaster, chromosome 2L, region 27C-27C, BAC clone BACR13J07, complete sequence Length = 174287 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 ttttcgttttgtttggccagc 27 ||||||||||||||||||||| Sbjct: 28351 ttttcgttttgtttggccagc 28331
>emb|BX826658.1|CNS0A394 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB51ZG12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1894 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 235 tcagatttctcgttcgagtaagttgacaagatggtgaccca 275 |||| ||| ||||||||||||||||| || || |||||||| Sbjct: 1643 tcagctttttcgttcgagtaagttgataatatagtgaccca 1603
>emb|BX826703.1|CNS0A36O Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB56ZD08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1167 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 235 tcagatttctcgttcgagtaagttgacaagatggtgaccca 275 |||| ||| ||||||||||||||||| || || |||||||| Sbjct: 965 tcagctttttcgttcgagtaagttgataatatagtgaccca 925
>gb|AE003615.3| Drosophila melanogaster chromosome 2L, section 24 of 83 of the complete sequence Length = 270751 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 ttttcgttttgtttggccagc 27 ||||||||||||||||||||| Sbjct: 164845 ttttcgttttgtttggccagc 164825
>gb|AC004277.1|AC004277 Drosophila melanogaster DNA sequence (P1 DS01321 (D143)), complete sequence Length = 82849 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 ttttcgttttgtttggccagc 27 ||||||||||||||||||||| Sbjct: 9411 ttttcgttttgtttggccagc 9431
>emb|AL671910.9| Mouse DNA sequence from clone RP23-245M12 on chromosome X, complete sequence Length = 141713 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 aaaacagcaaaaccatgaagt 174 ||||||||||||||||||||| Sbjct: 107128 aaaacagcaaaaccatgaagt 107148
>gb|AC008097.5| Drosophila melanogaster clone BACR20D06, complete sequence Length = 185670 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 ccaacataacgaagccggag 130 |||||||||||||||||||| Sbjct: 135933 ccaacataacgaagccggag 135952
>gb|BT012319.1| Drosophila melanogaster AT29374 full insert cDNA Length = 1189 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 ttcgataggaaccacaccat 331 |||||||||||||||||||| Sbjct: 371 ttcgataggaaccacaccat 352
>gb|AC115754.7| Mus musculus chromosome 12, clone RP23-34D20, complete sequence Length = 217173 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 tttctttttcgttttgtttg 21 |||||||||||||||||||| Sbjct: 112262 tttctttttcgttttgtttg 112281
>ref|NM_166103.1| Drosophila melanogaster CG30466-RA (CG30466), mRNA Length = 1227 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 ttcgataggaaccacaccat 331 |||||||||||||||||||| Sbjct: 785 ttcgataggaaccacaccat 766
>gb|AC166644.7| Mus musculus chromosome 1, clone RP23-375C6, complete sequence Length = 175851 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gcaaaaccatgaagtatgtg 179 |||||||||||||||||||| Sbjct: 151070 gcaaaaccatgaagtatgtg 151089
>gb|AC156568.3| Mus musculus BAC clone RP23-291D3 from chromosome 12, complete sequence Length = 224350 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 152 ataaaacagcaaaaccatgaagta 175 ||||||||||||||||| |||||| Sbjct: 76991 ataaaacagcaaaaccaggaagta 76968
>gb|AC019018.9|AC019018 Arabidopsis thaliana chromosome 1 BAC F14G24 genomic sequence, complete sequence Length = 126253 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 232 gcttcagatttctcgttcgagtaa 255 ||||| |||||||||||||||||| Sbjct: 56605 gcttctgatttctcgttcgagtaa 56582
>gb|AC016751.7| Homo sapiens BAC clone RP11-504O20 from 2, complete sequence Length = 176379 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 gttttgtttggccagcacaa 31 |||||||||||||||||||| Sbjct: 113662 gttttgtttggccagcacaa 113643
>gb|AY220758.1| Homo sapiens ataxia telangiectasia mutated (includes complementation groups A, C and D) (ATM) gene, partial cds Length = 115612 Score = 40.1 bits (20), Expect = 6.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 169 tgaagtatgtgctntctggagtt 191 ||||||||||||| ||||||||| Sbjct: 106036 tgaagtatgtgctgtctggagtt 106058
>gb|AC008369.1|AC008369 Drosophila melanogaster, chromosome 2R, region 52A4-52B4, P1 clones BACR48C01 and DS08592, complete sequence Length = 192366 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 ttcgataggaaccacaccat 331 |||||||||||||||||||| Sbjct: 85816 ttcgataggaaccacaccat 85797
>gb|AE003810.3| Drosophila melanogaster chromosome 2R, section 40 of 73 of the complete sequence Length = 271178 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 ttcgataggaaccacaccat 331 |||||||||||||||||||| Sbjct: 163174 ttcgataggaaccacaccat 163155
>gb|AE003793.3| Drosophila melanogaster chromosome 2R, section 57 of 73 of the complete sequence Length = 271902 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 ccaacataacgaagccggag 130 |||||||||||||||||||| Sbjct: 78426 ccaacataacgaagccggag 78445
>gb|AF123310.1|AF123310 Arabidopsis thaliana NAC domain protein NAM gene, complete cds Length = 4669 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 gcttcagatttctcgttcgagtaa 255 ||||| |||||||||||||||||| Sbjct: 4454 gcttctgatttctcgttcgagtaa 4477
>dbj|AP001925.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-241D13, complete sequence Length = 180163 Score = 40.1 bits (20), Expect = 6.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 169 tgaagtatgtgctntctggagtt 191 ||||||||||||| ||||||||| Sbjct: 161292 tgaagtatgtgctgtctggagtt 161314
>dbj|AP005718.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-415G10, complete sequence Length = 186104 Score = 40.1 bits (20), Expect = 6.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 169 tgaagtatgtgctntctggagtt 191 ||||||||||||| ||||||||| Sbjct: 3360 tgaagtatgtgctgtctggagtt 3382
>gb|AC120132.11| Mus musculus chromosome 6, clone RP23-105D1, complete sequence Length = 203185 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 tacaatttatacaatcccaa 114 |||||||||||||||||||| Sbjct: 100998 tacaatttatacaatcccaa 101017
>dbj|AP000838.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-21A6, complete sequence Length = 109666 Score = 40.1 bits (20), Expect = 6.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 169 tgaagtatgtgctntctggagtt 191 ||||||||||||| ||||||||| Sbjct: 50477 tgaagtatgtgctgtctggagtt 50499
>gb|U82828.1|HSU82828 Homo sapiens ataxia telangiectasia (ATM) gene, complete cds Length = 184490 Score = 40.1 bits (20), Expect = 6.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 169 tgaagtatgtgctntctggagtt 191 ||||||||||||| ||||||||| Sbjct: 114916 tgaagtatgtgctgtctggagtt 114938 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,811,971 Number of Sequences: 3902068 Number of extensions: 2811971 Number of successful extensions: 50187 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50053 Number of HSP's gapped (non-prelim): 126 length of query: 471 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 449 effective length of database: 17,147,199,772 effective search space: 7699092697628 effective search space used: 7699092697628 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)