ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61f16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IP5P3_ARATH (Q9LR47) Type I inositol-1,4,5-trisphosphate 5-phosp... 40 0.006
2ATG9_CANAL (Q5ANC9) Autophagy-related protein 9 32 1.3
3VGLB_GPCMV (Q69024) Glycoprotein B precursor 32 1.3
4MRE11_COPCI (Q9UVN9) Double-strand break repair protein MRE11 32 2.2
5CAT1_CLOKL (P38946) Succinyl-CoA:coenzyme A transferase (EC 2.8.... 31 2.8
6HERC2_DROME (Q9VR91) HECT domain and RCC1-like domain-containing... 30 4.8
7BZFB_HUMAN (Q9NVA1) Basic FGF-repressed Zic-binding protein (bFZb) 30 6.3
8SYQ_PSEAE (Q9I2U8) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 30 6.3
9BZFB_MOUSE (Q9CWU6) Basic FGF-repressed Zic-binding protein (mbFZb) 30 6.3
10O10Z1_HUMAN (Q8NGY1) Olfactory receptor 10Z1 30 8.2
11YIA2_YEAST (P40559) Hypothetical 108.4 kDa protein in BET1-PAN1 ... 30 8.2
12RP1_HUMAN (P56715) Oxygen-regulated protein 1 (Retinitis pigment... 30 8.2

>IP5P3_ARATH (Q9LR47) Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 (EC|
           3.1.3.56) (Cotyledon vascular pattern 2 protein)
          Length = 609

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 22/53 (41%), Positives = 32/53 (60%)
 Frame = -1

Query: 654 FSDHRPVYSIFTAEVKLPSQAQFGSFTRSSSLMGVDELPYPTYPRSYTDINFY 496
           FSDHRPVY IF AEV+        + + S+S +  +EL    Y R YT+++F+
Sbjct: 559 FSDHRPVYGIFCAEVESAHNRIKRTTSYSASRVQAEEL--LPYSRGYTELSFF 609



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>ATG9_CANAL (Q5ANC9) Autophagy-related protein 9|
          Length = 952

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 69  CYITSGNQAKKKKNPSLPFQSHKPLRKR-EGKKNKWHATKLASAVSDYSIYYLNSRLELP 245
           CY    N  +K KN        K  RKR + K NK+  TK+ + +S  ++   NS +E+ 
Sbjct: 750 CYFAMFNFEEKDKNMMSDLNKSKKRRKRMKNKMNKYGKTKMVNPISGKTV---NSEIEMT 806

Query: 246 CIS 254
            IS
Sbjct: 807 KIS 809



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>VGLB_GPCMV (Q69024) Glycoprotein B precursor|
          Length = 901

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 12/33 (36%), Positives = 24/33 (72%)
 Frame = +2

Query: 554 PIRELERVKLPNWAWLGSFTSAVKMLYTGLWSE 652
           P+R + R ++ + +W G++TSA+ +LY G++ E
Sbjct: 3   PVRGIARSRILSCSWRGTWTSALTILYLGVYCE 35



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>MRE11_COPCI (Q9UVN9) Double-strand break repair protein MRE11|
          Length = 731

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +1

Query: 1   SNGGCSFLLFD*NDSAEPSQPAL--VTLHQETKQKRRKIQAFPSRATNRSGKGRGKK 165
           + GG +F + D +D  EP  P        + T  K+   +A   +AT  + +GRGKK
Sbjct: 581 TGGGATFNMSDDDDDDEPPPPPKRRAATSRATTTKKAPAKAPAKKATTTTARGRGKK 637



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>CAT1_CLOKL (P38946) Succinyl-CoA:coenzyme A transferase (EC 2.8.3.-)|
          Length = 538

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
 Frame = +3

Query: 117 LPFQSHKPLRKREGKKNKWHATKLASAVSDYSIYYLNSRLELPCISVA-------FVPAQ 275
           +P+Q++  +RK+    +  +A    S ++ Y  Y +  ++++  I           +P+ 
Sbjct: 128 IPYQTNSDMRKKINDGSIKYADMHLSHMAQYINYSVIPKVDIAIIEAVAITEEGDIIPST 187

Query: 276 GWLESIKTVHNQQTAQIFLN----LELKGSS*VSAICCTPGNIPIPGTLGGTKFHQAYSY 443
           G   +   V N     + +N    LEL+G + +  +   P   PIP    G +    Y  
Sbjct: 188 GIGNTATFVENADKVIVEINEAQPLELEGMADIYTLKNPPRREPIPIVNAGNRIGTTYVT 247

Query: 444 SGTEE 458
            G+E+
Sbjct: 248 CGSEK 252



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>HERC2_DROME (Q9VR91) HECT domain and RCC1-like domain-containing protein 2|
          Length = 4912

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
 Frame = +1

Query: 418  RSFIRPTPTLAPKKECLGWLH--------GDAQSVKVDICVTAWISWVWQLIHPH*GAGT 573
            R+ I P P+++     LGWL+        GD   + +++    W+S    L+    G   
Sbjct: 2056 RTIIYPKPSMSNISYALGWLNLGFIRAISGDCPRLCLELSTPGWLSHYLSLLEQPAG--- 2112

Query: 574  SEAAELGLARQLHLRR 621
                E G+ RQLH  R
Sbjct: 2113 ---NEAGVYRQLHCLR 2125



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>BZFB_HUMAN (Q9NVA1) Basic FGF-repressed Zic-binding protein (bFZb)|
          Length = 299

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -1

Query: 621 TAEVKLPSQAQFGSFTRSSSLMG-VDELPYPTYPRSYTDINFY*LCIPMEPAKTFFLRCQ 445
           T +   P + + G+FT+    MG    L Y  +      +  Y  C+     + FFLRCQ
Sbjct: 79  TKDSPQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRMYTSCVEKTDFEEFFLRCQ 138



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>SYQ_PSEAE (Q9I2U8) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 556

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 654 FSDHRPVYSIFTAEVKLPSQAQFGSFTR 571
           F DHRP+Y  F A + +P+Q +   F+R
Sbjct: 235 FEDHRPLYEWFLANLPVPAQPRQYEFSR 262



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>BZFB_MOUSE (Q9CWU6) Basic FGF-repressed Zic-binding protein (mbFZb)|
          Length = 295

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = -1

Query: 645 HRPVYSIFTAEVKLPSQAQFGSFTRSSSLMG-VDELPYPTYPRSYTDINFY*LCIPMEPA 469
           H     + T +   P + + G FT+    MG    L Y  +      +  Y  C+     
Sbjct: 67  HNTSKLLTTQDFPQPVEEKVGPFTKIIEAMGFTGPLKYSKWKIKIAALRMYTSCVEKTDF 126

Query: 468 KTFFLRCQ 445
           + FFLRCQ
Sbjct: 127 EEFFLRCQ 134



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>O10Z1_HUMAN (Q8NGY1) Olfactory receptor 10Z1|
          Length = 313

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 363 SAICCTPGNIP--IPGTLGGTKFHQAYSYSGTEERMSWLAPWGCT 491
           S  C T G IP  + G  GG    QA SY G   +M + A W CT
Sbjct: 69  SETCYTLGIIPRMLSGLAGGD---QAISYVGCAAQMFFSASWACT 110



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>YIA2_YEAST (P40559) Hypothetical 108.4 kDa protein in BET1-PAN1 intergenic|
           region
          Length = 946

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -1

Query: 654 FSDHRPVYSIFTAEV 610
           FSDHRPVY+IF A V
Sbjct: 810 FSDHRPVYAIFRARV 824



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>RP1_HUMAN (P56715) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1|
            protein) (Retinitis pigmentosa 1 protein)
          Length = 2156

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 384  GNIPIPGTLGGTKFHQAYSYSGTEERMSWL 473
            G + +PG+L G  FH A   S T   ++WL
Sbjct: 1104 GVVQMPGSLAGVPFHSAICNSSTNLLLAWL 1133


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,053,576
Number of Sequences: 219361
Number of extensions: 2025993
Number of successful extensions: 5474
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5471
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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