Clone Name | rbah61f16 |
---|---|
Clone Library Name | barley_pub |
>IP5P3_ARATH (Q9LR47) Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 (EC| 3.1.3.56) (Cotyledon vascular pattern 2 protein) Length = 609 Score = 40.0 bits (92), Expect = 0.006 Identities = 22/53 (41%), Positives = 32/53 (60%) Frame = -1 Query: 654 FSDHRPVYSIFTAEVKLPSQAQFGSFTRSSSLMGVDELPYPTYPRSYTDINFY 496 FSDHRPVY IF AEV+ + + S+S + +EL Y R YT+++F+ Sbjct: 559 FSDHRPVYGIFCAEVESAHNRIKRTTSYSASRVQAEEL--LPYSRGYTELSFF 609
>ATG9_CANAL (Q5ANC9) Autophagy-related protein 9| Length = 952 Score = 32.3 bits (72), Expect = 1.3 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +3 Query: 69 CYITSGNQAKKKKNPSLPFQSHKPLRKR-EGKKNKWHATKLASAVSDYSIYYLNSRLELP 245 CY N +K KN K RKR + K NK+ TK+ + +S ++ NS +E+ Sbjct: 750 CYFAMFNFEEKDKNMMSDLNKSKKRRKRMKNKMNKYGKTKMVNPISGKTV---NSEIEMT 806 Query: 246 CIS 254 IS Sbjct: 807 KIS 809
>VGLB_GPCMV (Q69024) Glycoprotein B precursor| Length = 901 Score = 32.3 bits (72), Expect = 1.3 Identities = 12/33 (36%), Positives = 24/33 (72%) Frame = +2 Query: 554 PIRELERVKLPNWAWLGSFTSAVKMLYTGLWSE 652 P+R + R ++ + +W G++TSA+ +LY G++ E Sbjct: 3 PVRGIARSRILSCSWRGTWTSALTILYLGVYCE 35
>MRE11_COPCI (Q9UVN9) Double-strand break repair protein MRE11| Length = 731 Score = 31.6 bits (70), Expect = 2.2 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Frame = +1 Query: 1 SNGGCSFLLFD*NDSAEPSQPAL--VTLHQETKQKRRKIQAFPSRATNRSGKGRGKK 165 + GG +F + D +D EP P + T K+ +A +AT + +GRGKK Sbjct: 581 TGGGATFNMSDDDDDDEPPPPPKRRAATSRATTTKKAPAKAPAKKATTTTARGRGKK 637
>CAT1_CLOKL (P38946) Succinyl-CoA:coenzyme A transferase (EC 2.8.3.-)| Length = 538 Score = 31.2 bits (69), Expect = 2.8 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 11/125 (8%) Frame = +3 Query: 117 LPFQSHKPLRKREGKKNKWHATKLASAVSDYSIYYLNSRLELPCISVA-------FVPAQ 275 +P+Q++ +RK+ + +A S ++ Y Y + ++++ I +P+ Sbjct: 128 IPYQTNSDMRKKINDGSIKYADMHLSHMAQYINYSVIPKVDIAIIEAVAITEEGDIIPST 187 Query: 276 GWLESIKTVHNQQTAQIFLN----LELKGSS*VSAICCTPGNIPIPGTLGGTKFHQAYSY 443 G + V N + +N LEL+G + + + P PIP G + Y Sbjct: 188 GIGNTATFVENADKVIVEINEAQPLELEGMADIYTLKNPPRREPIPIVNAGNRIGTTYVT 247 Query: 444 SGTEE 458 G+E+ Sbjct: 248 CGSEK 252
>HERC2_DROME (Q9VR91) HECT domain and RCC1-like domain-containing protein 2| Length = 4912 Score = 30.4 bits (67), Expect = 4.8 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 8/76 (10%) Frame = +1 Query: 418 RSFIRPTPTLAPKKECLGWLH--------GDAQSVKVDICVTAWISWVWQLIHPH*GAGT 573 R+ I P P+++ LGWL+ GD + +++ W+S L+ G Sbjct: 2056 RTIIYPKPSMSNISYALGWLNLGFIRAISGDCPRLCLELSTPGWLSHYLSLLEQPAG--- 2112 Query: 574 SEAAELGLARQLHLRR 621 E G+ RQLH R Sbjct: 2113 ---NEAGVYRQLHCLR 2125
>BZFB_HUMAN (Q9NVA1) Basic FGF-repressed Zic-binding protein (bFZb)| Length = 299 Score = 30.0 bits (66), Expect = 6.3 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Frame = -1 Query: 621 TAEVKLPSQAQFGSFTRSSSLMG-VDELPYPTYPRSYTDINFY*LCIPMEPAKTFFLRCQ 445 T + P + + G+FT+ MG L Y + + Y C+ + FFLRCQ Sbjct: 79 TKDSPQPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKIAALRMYTSCVEKTDFEEFFLRCQ 138
>SYQ_PSEAE (Q9I2U8) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 556 Score = 30.0 bits (66), Expect = 6.3 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -1 Query: 654 FSDHRPVYSIFTAEVKLPSQAQFGSFTR 571 F DHRP+Y F A + +P+Q + F+R Sbjct: 235 FEDHRPLYEWFLANLPVPAQPRQYEFSR 262
>BZFB_MOUSE (Q9CWU6) Basic FGF-repressed Zic-binding protein (mbFZb)| Length = 295 Score = 30.0 bits (66), Expect = 6.3 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Frame = -1 Query: 645 HRPVYSIFTAEVKLPSQAQFGSFTRSSSLMG-VDELPYPTYPRSYTDINFY*LCIPMEPA 469 H + T + P + + G FT+ MG L Y + + Y C+ Sbjct: 67 HNTSKLLTTQDFPQPVEEKVGPFTKIIEAMGFTGPLKYSKWKIKIAALRMYTSCVEKTDF 126 Query: 468 KTFFLRCQ 445 + FFLRCQ Sbjct: 127 EEFFLRCQ 134
>O10Z1_HUMAN (Q8NGY1) Olfactory receptor 10Z1| Length = 313 Score = 29.6 bits (65), Expect = 8.2 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +3 Query: 363 SAICCTPGNIP--IPGTLGGTKFHQAYSYSGTEERMSWLAPWGCT 491 S C T G IP + G GG QA SY G +M + A W CT Sbjct: 69 SETCYTLGIIPRMLSGLAGGD---QAISYVGCAAQMFFSASWACT 110
>YIA2_YEAST (P40559) Hypothetical 108.4 kDa protein in BET1-PAN1 intergenic| region Length = 946 Score = 29.6 bits (65), Expect = 8.2 Identities = 12/15 (80%), Positives = 13/15 (86%) Frame = -1 Query: 654 FSDHRPVYSIFTAEV 610 FSDHRPVY+IF A V Sbjct: 810 FSDHRPVYAIFRARV 824
>RP1_HUMAN (P56715) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1| protein) (Retinitis pigmentosa 1 protein) Length = 2156 Score = 29.6 bits (65), Expect = 8.2 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +3 Query: 384 GNIPIPGTLGGTKFHQAYSYSGTEERMSWL 473 G + +PG+L G FH A S T ++WL Sbjct: 1104 GVVQMPGSLAGVPFHSAICNSSTNLLLAWL 1133 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,053,576 Number of Sequences: 219361 Number of extensions: 2025993 Number of successful extensions: 5474 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 5274 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5471 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)