Clone Name | rbah61f16 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_469152.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2937 Score = 165 bits (83), Expect = 2e-37 Identities = 158/183 (86%) Strand = Plus / Minus Query: 472 tggctccatggggatgcacaatcagtaaaagttgatatctgtgtaactgcgtggataagt 531 ||||||||| | ||| |||||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 2752 tggctccatcgagatacacaatcaataaaaattgatatctgtgtaactgcgtggataagt 2693 Query: 532 tgggtatggcagctcatccacccccattagggagctggaacgagtgaagctgccgaattg 591 ||||||||| || ||||||||||||||||| ||| | ||||||| ||||||| ||||| Sbjct: 2692 tgggtatggtagttcatccacccccattagagaggtagaacgagcaaagctgcaaaattg 2633 Query: 592 ggcctggctcggcagcttcacctccgccgtgaaaatgctgtatacgggtctgtggtccga 651 || |||||||| | || |||||||| ||||||||||||||||| || ||||| || || Sbjct: 2632 ggtttggctcggtatctgaacctccgcagtgaaaatgctgtatacaggcctgtgatctga 2573 Query: 652 gaa 654 ||| Sbjct: 2572 gaa 2570
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 165 bits (83), Expect = 2e-37 Identities = 158/183 (86%) Strand = Plus / Minus Query: 472 tggctccatggggatgcacaatcagtaaaagttgatatctgtgtaactgcgtggataagt 531 ||||||||| | ||| |||||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 25781834 tggctccatcgagatacacaatcaataaaaattgatatctgtgtaactgcgtggataagt 25781775 Query: 532 tgggtatggcagctcatccacccccattagggagctggaacgagtgaagctgccgaattg 591 ||||||||| || ||||||||||||||||| ||| | ||||||| ||||||| ||||| Sbjct: 25781774 tgggtatggtagttcatccacccccattagagaggtagaacgagcaaagctgcaaaattg 25781715 Query: 592 ggcctggctcggcagcttcacctccgccgtgaaaatgctgtatacgggtctgtggtccga 651 || |||||||| | || |||||||| ||||||||||||||||| || ||||| || || Sbjct: 25781714 ggtttggctcggtatctgaacctccgcagtgaaaatgctgtatacaggcctgtgatctga 25781655 Query: 652 gaa 654 ||| Sbjct: 25781654 gaa 25781652 Score = 48.1 bits (24), Expect = 0.037 Identities = 39/44 (88%) Strand = Plus / Minus Query: 611 acctccgccgtgaaaatgctgtatacgggtctgtggtccgagaa 654 ||||||||| ||||||||||||| || ||||| ||||| ||||| Sbjct: 32710363 acctccgccatgaaaatgctgtacaccggtctatggtcggagaa 32710320
>gb|AC137991.3| Oryza sativa chromosome 3 BAC OSJNBa0034D21 genomic sequence, complete sequence Length = 190834 Score = 165 bits (83), Expect = 2e-37 Identities = 158/183 (86%) Strand = Plus / Plus Query: 472 tggctccatggggatgcacaatcagtaaaagttgatatctgtgtaactgcgtggataagt 531 ||||||||| | ||| |||||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 63062 tggctccatcgagatacacaatcaataaaaattgatatctgtgtaactgcgtggataagt 63121 Query: 532 tgggtatggcagctcatccacccccattagggagctggaacgagtgaagctgccgaattg 591 ||||||||| || ||||||||||||||||| ||| | ||||||| ||||||| ||||| Sbjct: 63122 tgggtatggtagttcatccacccccattagagaggtagaacgagcaaagctgcaaaattg 63181 Query: 592 ggcctggctcggcagcttcacctccgccgtgaaaatgctgtatacgggtctgtggtccga 651 || |||||||| | || |||||||| ||||||||||||||||| || ||||| || || Sbjct: 63182 ggtttggctcggtatctgaacctccgcagtgaaaatgctgtatacaggcctgtgatctga 63241 Query: 652 gaa 654 ||| Sbjct: 63242 gaa 63244
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 165 bits (83), Expect = 2e-37 Identities = 158/183 (86%) Strand = Plus / Minus Query: 472 tggctccatggggatgcacaatcagtaaaagttgatatctgtgtaactgcgtggataagt 531 ||||||||| | ||| |||||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 25873143 tggctccatcgagatacacaatcaataaaaattgatatctgtgtaactgcgtggataagt 25873084 Query: 532 tgggtatggcagctcatccacccccattagggagctggaacgagtgaagctgccgaattg 591 ||||||||| || ||||||||||||||||| ||| | ||||||| ||||||| ||||| Sbjct: 25873083 tgggtatggtagttcatccacccccattagagaggtagaacgagcaaagctgcaaaattg 25873024 Query: 592 ggcctggctcggcagcttcacctccgccgtgaaaatgctgtatacgggtctgtggtccga 651 || |||||||| | || |||||||| ||||||||||||||||| || ||||| || || Sbjct: 25873023 ggtttggctcggtatctgaacctccgcagtgaaaatgctgtatacaggcctgtgatctga 25872964 Query: 652 gaa 654 ||| Sbjct: 25872963 gaa 25872961 Score = 48.1 bits (24), Expect = 0.037 Identities = 39/44 (88%) Strand = Plus / Minus Query: 611 acctccgccgtgaaaatgctgtatacgggtctgtggtccgagaa 654 ||||||||| ||||||||||||| || ||||| ||||| ||||| Sbjct: 32800873 acctccgccatgaaaatgctgtacaccggtctatggtcggagaa 32800830
>dbj|AK102165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086H07, full insert sequence Length = 2938 Score = 165 bits (83), Expect = 2e-37 Identities = 158/183 (86%) Strand = Plus / Minus Query: 472 tggctccatggggatgcacaatcagtaaaagttgatatctgtgtaactgcgtggataagt 531 ||||||||| | ||| |||||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 2753 tggctccatcgagatacacaatcaataaaaattgatatctgtgtaactgcgtggataagt 2694 Query: 532 tgggtatggcagctcatccacccccattagggagctggaacgagtgaagctgccgaattg 591 ||||||||| || ||||||||||||||||| ||| | ||||||| ||||||| ||||| Sbjct: 2693 tgggtatggtagttcatccacccccattagagaggtagaacgagcaaagctgcaaaattg 2634 Query: 592 ggcctggctcggcagcttcacctccgccgtgaaaatgctgtatacgggtctgtggtccga 651 || |||||||| | || |||||||| ||||||||||||||||| || ||||| || || Sbjct: 2633 ggtttggctcggtatctgaacctccgcagtgaaaatgctgtatacaggcctgtgatctga 2574 Query: 652 gaa 654 ||| Sbjct: 2573 gaa 2571
>ref|XM_469151.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1689 Score = 147 bits (74), Expect = 5e-32 Identities = 137/158 (86%) Strand = Plus / Minus Query: 497 taaaagttgatatctgtgtaactgcgtggataagttgggtatggcagctcatccaccccc 556 ||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 1685 taaaaattgatatctgtgtaactgcgtggataagttgggtatggtagttcatccaccccc 1626 Query: 557 attagggagctggaacgagtgaagctgccgaattgggcctggctcggcagcttcacctcc 616 ||||| ||| | ||||||| ||||||| ||||||| |||||||| | || |||||| Sbjct: 1625 attagagaggtagaacgagcaaagctgcaaaattgggtttggctcggtatctgaacctcc 1566 Query: 617 gccgtgaaaatgctgtatacgggtctgtggtccgagaa 654 || ||||||||||||||||| || ||||| || ||||| Sbjct: 1565 gcagtgaaaatgctgtatacaggcctgtgatctgagaa 1528
>ref|XM_469961.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1620 Score = 48.1 bits (24), Expect = 0.037 Identities = 39/44 (88%) Strand = Plus / Minus Query: 611 acctccgccgtgaaaatgctgtatacgggtctgtggtccgagaa 654 ||||||||| ||||||||||||| || ||||| ||||| ||||| Sbjct: 1511 acctccgccatgaaaatgctgtacaccggtctatggtcggagaa 1468
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 48.1 bits (24), Expect = 0.037 Identities = 39/44 (88%) Strand = Plus / Plus Query: 611 acctccgccgtgaaaatgctgtatacgggtctgtggtccgagaa 654 ||||||||| ||||||||||||| || ||||| ||||| ||||| Sbjct: 33544 acctccgccatgaaaatgctgtacaccggtctatggtcggagaa 33587
>gb|DQ132512.1|DQ132511S2 Mus musculus strain 129Sv/J EAT2b (Eat2b) gene, exons 2 through 4 and complete cds Length = 6672 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 8 gtggctgttcctttcttctttttgac 33 ||||||| |||||||||||||||||| Sbjct: 5924 gtggctgatcctttcttctttttgac 5949
>emb|AL626807.7| Mouse DNA sequence from clone RP23-350G1 on chromosome 11 Contains two novel genes, the 5' end of the Accn1 gene for neuronal amiloride-sensitive cation channel 1 (degenerin) and the Ccl2 and Ccl7 genes for chemokine (C-C motif) ligand 2 and 7, complete sequence Length = 223726 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 231 agactggagctgccctgcattt 252 |||||||||||||||||||||| Sbjct: 218548 agactggagctgccctgcattt 218569
>emb|CT033765.2| Medicago truncatula chromosome 5 clone mth2-105d20, COMPLETE SEQUENCE Length = 131814 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 293 caaaactgtgcacaaccaacaa 314 |||||||||||||||||||||| Sbjct: 122476 caaaactgtgcacaaccaacaa 122455
>emb|CT009653.2| Medicago truncatula chromosome 5 clone mth2-173o18, COMPLETE SEQUENCE Length = 115799 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 293 caaaactgtgcacaaccaacaa 314 |||||||||||||||||||||| Sbjct: 153 caaaactgtgcacaaccaacaa 132
>emb|AL359732.12| Human DNA sequence from clone RP11-450B15 on chromosome 1 Contains the 5' end of the PSEN2 gene for presenilin 2 (Alzheimer disease 4), complete sequence Length = 93426 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 ctcagctgagcccagccaacc 62 ||||||||||||||||||||| Sbjct: 31796 ctcagctgagcccagccaacc 31776
>emb|AL353600.10| Human DNA sequence from clone RP11-90B22 on chromosome 10 Contains the 5' end of the NRP1 gene for neuropilin 1, a novel gene and a CpG island, complete sequence Length = 124540 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 tttcttctttttgactaaaac 39 ||||||||||||||||||||| Sbjct: 120272 tttcttctttttgactaaaac 120252
>gb|AC011758.6|AC011758 Drosophila melanogaster, chromosome X, region 19C-19E, BAC clone BACR25I22, complete sequence Length = 164942 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 aaaaagaagaaaaatccaagc 116 ||||||||||||||||||||| Sbjct: 115529 aaaaagaagaaaaatccaagc 115509
>gb|AE003571.4| Drosophila melanogaster chromosome X, section 68 of 74 of the complete sequence Length = 302538 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 aaaaagaagaaaaatccaagc 116 ||||||||||||||||||||| Sbjct: 217721 aaaaagaagaaaaatccaagc 217701
>emb|AL049830.3|CNS00009 Human chromosome 14 DNA sequence BAC R-829H16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 214558 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 aaatcttcctaaatctagaat 342 ||||||||||||||||||||| Sbjct: 122184 aaatcttcctaaatctagaat 122204
>emb|AL845304.4| Mouse DNA sequence from clone RP23-184H6 on chromosome X, complete sequence Length = 160065 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 agggatggttagaatcaatca 294 ||||||||||||||||||||| Sbjct: 81542 agggatggttagaatcaatca 81562
>emb|AL731724.8| Mouse DNA sequence from clone RP23-1F19 on chromosome 2, complete sequence Length = 205917 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 86 aaaccaagcaaaaaagaagaaaaat 110 ||||||| ||||||||||||||||| Sbjct: 10397 aaaccaaacaaaaaagaagaaaaat 10421
>gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_G11, complete sequence Length = 115808 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 accaagcaaaaaagaagaaaaatc 111 |||||||||||||||| ||||||| Sbjct: 97335 accaagcaaaaaagaaaaaaaatc 97358
>ref|XM_519101.1| PREDICTED: Pan troglodytes LOC463414 (LOC463414), mRNA Length = 1829 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 aaaaagaagaaaaatccaag 115 |||||||||||||||||||| Sbjct: 1569 aaaaagaagaaaaatccaag 1550
>gb|AF252827.5| Homo sapiens chromosome 8 clone RP11-166E20 map q24.13, complete sequence Length = 165347 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 acaatcagtaaaagttgata 508 |||||||||||||||||||| Sbjct: 144388 acaatcagtaaaagttgata 144369
>gb|AF228660.5| Homo sapiens chromosome 8 clone RP11-37N22 map q24.13, complete sequence Length = 182016 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 acaatcagtaaaagttgata 508 |||||||||||||||||||| Sbjct: 3834 acaatcagtaaaagttgata 3815
>gb|AC182669.2| Populus trichocarpa clone Pop1-21I14, complete sequence Length = 149597 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 aaaaaagaagaaaaatccaa 114 |||||||||||||||||||| Sbjct: 99136 aaaaaagaagaaaaatccaa 99117
>ref|XM_536835.2| PREDICTED: Canis familiaris hypothetical LOC479707, transcript variant 1 (LOC479707), mRNA Length = 3626 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 cctgcatttcggttgcattt 263 |||||||||||||||||||| Sbjct: 3409 cctgcatttcggttgcattt 3428
>gb|AC004965.2| Homo sapiens PAC clone RP5-1106H14 from 7, complete sequence Length = 170758 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 95 aaaaaagaagaaaaatccaagcct 118 |||||||||||||| ||||||||| Sbjct: 97237 aaaaaagaagaaaactccaagcct 97214
>gb|AC069313.5| Homo sapiens BAC clone CTD-2016H9 from 7, complete sequence Length = 100679 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 aaaaagaagaaaaatccaag 115 |||||||||||||||||||| Sbjct: 99498 aaaaagaagaaaaatccaag 99479
>gb|AC143356.1| Pan troglodytes BAC clone RP43-64A13 from 7, complete sequence Length = 154864 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 aaaaagaagaaaaatccaag 115 |||||||||||||||||||| Sbjct: 31052 aaaaagaagaaaaatccaag 31071
>emb|BX016132.1|CNS08KM0 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA24AG12 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 968 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 aaaccaagcaaaaaagaagaaaaa 109 ||||||||||||||| |||||||| Sbjct: 700 aaaccaagcaaaaaaaaagaaaaa 723
>emb|X73141.1|SHTLYCA S.hyodysenteriae gene for tlyC hemolysin Length = 2222 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 caagcaaaaaagaagaaaaa 109 |||||||||||||||||||| Sbjct: 81 caagcaaaaaagaagaaaaa 100
>gb|U41547.2| Caenorhabditis elegans cosmid F22A3, complete sequence Length = 30097 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 aagcaaaaaagaagaaaaat 110 |||||||||||||||||||| Sbjct: 23021 aagcaaaaaagaagaaaaat 23002
>gb|AC007782.20| Homo sapiens 12 BAC RP11-515B12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166083 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 gaaaccaagcaaaaaagaagaaaa 108 ||||||| |||||||||||||||| Sbjct: 45898 gaaaccatgcaaaaaagaagaaaa 45875
>emb|AL645683.7| Mouse DNA sequence from clone RP23-374M7 on chromosome 13 Contains the V1ri9 gene for vomeronasal 1 receptor I9 and the gene for a novel vomeronasal 1 receptor I (V1ri) family member, complete sequence Length = 77611 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 aaaccaagcaaaaaagaaga 105 |||||||||||||||||||| Sbjct: 60445 aaaccaagcaaaaaagaaga 60464
>gb|AC182731.2| Pan troglodytes BAC clone CH251-677O10 from chromosome 7, complete sequence Length = 217081 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 95 aaaaaagaagaaaaatccaagcct 118 |||||||||||||| ||||||||| Sbjct: 203614 aaaaaagaagaaaactccaagcct 203637
>emb|CR613464.1| full-length cDNA clone CS0DF036YK13 of Fetal brain of Homo sapiens (human) Length = 2521 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 aaaaagaagaaaaatccaag 115 |||||||||||||||||||| Sbjct: 1706 aaaaagaagaaaaatccaag 1687
>gb|AC090921.7| Homo sapiens chromosome 8, clone RP11-37N22, complete sequence Length = 182041 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 acaatcagtaaaagttgata 508 |||||||||||||||||||| Sbjct: 178207 acaatcagtaaaagttgata 178226
>gb|AC091953.3| Homo sapiens chromosome 5 clone RP11-417J1, complete sequence Length = 172738 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 86 aaaccaagcaaaaaagaagaaaaa 109 ||||||||||||||| |||||||| Sbjct: 166794 aaaccaagcaaaaaaaaagaaaaa 166771
>gb|AC100871.2| Homo sapiens chromosome 8, clone RP11-959I15, complete sequence Length = 215314 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 acaatcagtaaaagttgata 508 |||||||||||||||||||| Sbjct: 74153 acaatcagtaaaagttgata 74172
>dbj|AK140859.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130050A15 product:unclassifiable, full insert sequence Length = 3073 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 aaaaaagaagaaaaatccaa 114 |||||||||||||||||||| Sbjct: 2110 aaaaaagaagaaaaatccaa 2091
>gb|AC093858.2| Homo sapiens BAC clone RP11-535C7 from 4, complete sequence Length = 151113 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 gctgttcctttcttcttttt 30 |||||||||||||||||||| Sbjct: 69025 gctgttcctttcttcttttt 69006
>dbj|AK141444.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530021A09 product:unclassifiable, full insert sequence Length = 4563 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ccaagcaaaaaagaagaaaa 108 |||||||||||||||||||| Sbjct: 2638 ccaagcaaaaaagaagaaaa 2619
>gb|AC097634.2| Homo sapiens chromosome 3 clone RP11-154H23, complete sequence Length = 193553 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 gaagaaagaatgtcttggct 472 |||||||||||||||||||| Sbjct: 134188 gaagaaagaatgtcttggct 134207
>gb|AC027328.4| Homo sapiens chromosome 5 clone CTD-2136J7, complete sequence Length = 88303 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 aaaccaagcaaaaaagaagaaaaa 109 ||||||||||||||| |||||||| Sbjct: 80680 aaaccaagcaaaaaaaaagaaaaa 80703
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 gctggaacgagtgaagctgc 584 |||||||||||||||||||| Sbjct: 1277325 gctggaacgagtgaagctgc 1277306
>gb|AC153651.4| Mus musculus BAC clone RP24-74B24 from chromosome 7, complete sequence Length = 256298 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 86 aaaccaagcaaaaaagaagaaaaa 109 |||||||||||| ||||||||||| Sbjct: 17114 aaaccaagcaaacaagaagaaaaa 17091
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 caagcaaaaaagaagaaaaa 109 |||||||||||||||||||| Sbjct: 23458297 caagcaaaaaagaagaaaaa 23458316
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 accaagcaaaaaagaagaaaaatc 111 |||||||||||||||| ||||||| Sbjct: 26716338 accaagcaaaaaagaaaaaaaatc 26716361
>gb|AC074088.5| Homo sapiens BAC clone RP11-122B24 from 4, complete sequence Length = 69463 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 agcaaaaaagaagaaaaatc 111 |||||||||||||||||||| Sbjct: 31118 agcaaaaaagaagaaaaatc 31137
>gb|AC064870.5| Homo sapiens BAC clone RP11-575E20 from 2, complete sequence Length = 133478 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 caagcaaaaaagaagaaaaa 109 |||||||||||||||||||| Sbjct: 41822 caagcaaaaaagaagaaaaa 41803
>gb|AC083817.19|AC083817 Mus musculus 1 BAC RP23-470G12 (Roswell Park Cancer Institute Mouse BAC) complete sequence Length = 204950 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 tcctaaatctagaattaaaa 347 |||||||||||||||||||| Sbjct: 27599 tcctaaatctagaattaaaa 27618
>gb|AC087040.6|AC087040 Mus musculus 1 BAC RP23-269M3 (RPCI Mouse BAC) complete sequence Length = 142488 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 tcctaaatctagaattaaaa 347 |||||||||||||||||||| Sbjct: 58163 tcctaaatctagaattaaaa 58144
>gb|AC025295.7|AC025295 Arabidopsis thaliana chromosome 1 BAC T4K22 genomic sequence, complete sequence Length = 82281 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 86 aaaccaagcaaaaaagaagaaaaa 109 |||||||| ||||||||||||||| Sbjct: 42292 aaaccaaggaaaaaagaagaaaaa 42269
>gb|AC107810.8| Mus musculus chromosome 1, clone RP23-68D4, complete sequence Length = 160167 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ccaagcaaaaaagaagaaaa 108 |||||||||||||||||||| Sbjct: 120324 ccaagcaaaaaagaagaaaa 120305
>dbj|AP004185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1301_C12 Length = 128396 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 caagcaaaaaagaagaaaaa 109 |||||||||||||||||||| Sbjct: 18690 caagcaaaaaagaagaaaaa 18709
>dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453G03 Length = 144480 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 caagcaaaaaagaagaaaaa 109 |||||||||||||||||||| Sbjct: 78194 caagcaaaaaagaagaaaaa 78213
>emb|AL807780.7| Mouse DNA sequence from clone RP23-456P12 on chromosome X, complete sequence Length = 158108 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 aggaaaccaagcaaaaaaga 102 |||||||||||||||||||| Sbjct: 92035 aggaaaccaagcaaaaaaga 92054
>ref|NM_210558.1| Eremothecium gossypii AER348Cp (AER348C), mRNA Length = 1878 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 565 gctggaacgagtgaagctgc 584 |||||||||||||||||||| Sbjct: 450 gctggaacgagtgaagctgc 469
>gb|AC004169.3|AC004169 Homo sapiens chromosome 4 clone C0236G06 map 4p16, complete sequence Length = 189805 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 actcagctgagcccagccaa 60 |||||||||||||||||||| Sbjct: 89706 actcagctgagcccagccaa 89725
>emb|AL157687.6|CNS01RFZ Human chromosome 14 DNA sequence BAC C-2552B11 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 197346 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 actcagctgagcccagccaa 60 |||||||||||||||||||| Sbjct: 150407 actcagctgagcccagccaa 150388
>gb|AC158116.2| Gallus gallus BAC clone CH261-122G21 from chromosome unknown, complete sequence Length = 213772 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 aaaaaagaagaaaaatccaa 114 |||||||||||||||||||| Sbjct: 97331 aaaaaagaagaaaaatccaa 97312
>gb|AC133195.4| Mus musculus BAC clone RP23-133F6 from 8, complete sequence Length = 214318 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 aaaaaagaagaaaaatccaa 114 |||||||||||||||||||| Sbjct: 161214 aaaaaagaagaaaaatccaa 161233
>gb|AC002546.1|AC002546 Homo sapiens chromosome 17, clone 193h18, complete sequence Length = 106420 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 35 aaaacgactcagctgagcccagccaacc 62 ||||| |||||||||||||||| ||||| Sbjct: 97403 aaaaccactcagctgagcccagtcaacc 97376
>gb|AC155316.6| Mus musculus BAC clone RP23-181P9 from chromosome 5, complete sequence Length = 204809 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 aaaagaagaaaaatccaagc 116 |||||||||||||||||||| Sbjct: 166755 aaaagaagaaaaatccaagc 166774
>dbj|AB223056.1| Oryzias latipes gene for SWS2 type opsin SWS2-A, complete cds Length = 2324 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 caagcaaaaaagaagaaaaa 109 |||||||||||||||||||| Sbjct: 269 caagcaaaaaagaagaaaaa 288
>gb|AC170864.2| Mus musculus BAC clone RP24-576D1 from chromosome 7, complete sequence Length = 208952 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 86 aaaccaagcaaaaaagaagaaaaa 109 |||||||||||| ||||||||||| Sbjct: 169153 aaaccaagcaaacaagaagaaaaa 169130
>emb|AL671993.7| Mouse DNA sequence from clone RP23-428E5 on chromosome X, complete sequence Length = 194106 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 aaaagaagaaaaatccaagc 116 |||||||||||||||||||| Sbjct: 157386 aaaagaagaaaaatccaagc 157405 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,717,432 Number of Sequences: 3902068 Number of extensions: 6717432 Number of successful extensions: 167646 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 167232 Number of HSP's gapped (non-prelim): 414 length of query: 654 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 631 effective length of database: 17,143,297,704 effective search space: 10817420851224 effective search space used: 10817420851224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)