Clone Name | rbah61f14 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009355.1| Triticum aestivum clone wlm96.pk0020.d2:fis, full insert mRNA sequence Length = 1424 Score = 850 bits (429), Expect = 0.0 Identities = 502/525 (95%), Gaps = 1/525 (0%) Strand = Plus / Minus Query: 2 attatagctagaagattgaggtttaacagctatatatggctggcccttgaaacaatattt 61 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1353 attatagctagaagatacaggtttaacagctatatatggctggcccttgaaacaatattt 1294 Query: 62 gcaaaccagcacggggattacaata-agcaagagcagcctaattacagaaattgtatcag 120 ||||||||| || ||||||||||| | |||||||| |||||||||||||| |||||||| Sbjct: 1293 gcaaaccagaacaaggattacaatataacaagagcaacctaattacagaaactgtatcag 1234 Query: 121 aacaggaggggccattaaggcaatggctcctctgagtctcccagccgtgacaagtggagg 180 | || ||||| || ||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 1233 gatagaaggggtcactaaggcaatggctcctccgagtctcccagtcgtgacaagtggagg 1174 Query: 181 taagcatcggtgccgtatccctccatggatatgatttgtaggtcgccaccgaaatattgc 240 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1173 taagcgtcggtgccgtatccctccatggatatgatttgtaggtcgccaccgaaatatcgc 1114 Query: 241 gcataaaggcgactaactggaagtccaaaaccatatccagccatagttactccttcacta 300 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1113 gcataaaggcgactaactggaagtccaaaaccatatccagccatagtcactccttcacta 1054 Query: 301 gggccctctatatcaggtagattttttgcagtgctgtaaagatatgtgaaaattctaggg 360 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1053 gggccctccatatcaggtagattctttgcagtgctgtaaagatatgtgaaaattctaggg 994 Query: 361 agcccacttctccgtattccaccaccttcatcactgaccttaatagtaacatcctctgtt 420 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 993 agcccacttctccgtattccaccgccttcatcactgaccttaatagtaacatcctctgtt 934 Query: 421 ccatcagcaactataattctgacaggaggaacatctttatcagaatccatatatctttcc 480 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 933 ccatcagcaactataattctgacaggaggaacatctttatcagaattcatatatctttcc 874 Query: 481 tgtactgcacgaagggaatttttcaccagttcaaacagcatgaga 525 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 873 tgtactgcacgaagggaatttttcaccagttcaaacagcatgaga 829
>gb|AY026039.1| Oryza sativa subsp. indica pyruvate dehydrogenase kinase 1 mRNA, complete cds Length = 1500 Score = 385 bits (194), Expect = e-103 Identities = 432/507 (85%), Gaps = 7/507 (1%) Strand = Plus / Minus Query: 24 ttaacagctatatatggctggcccttgaaa-caatatttgcaaaccagcacggggattac 82 |||||||||||| |||||||| ||||||| ||||||| ||||||||| | || ||||| Sbjct: 1260 ttaacagctataggtggctggcacttgaaaacaatattc-caaaccagcccaggaattac 1202 Query: 83 aataagcaagagcagcctaatta----cagaaattgtatcagaacaggaggggccattaa 138 || | |||||||| |||||||| |||| || ||||||| ||||| | ||| | || Sbjct: 1201 aagagacaagagcaacctaattaattacagagatggtatcaggacagg-gaagccttcaa 1143 Query: 139 ggcaatggctcctctgagtctcccagccgtgacaagtggaggtaagcatcggtgccgtat 198 ||||| |||||||| || ||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 1142 ggcaagggctcctccgaatctcccaaccgtgacaagtgcaggtaagcatcggtgccgtat 1083 Query: 199 ccctccatggatatgatttgtaggtcgccaccgaaatattgcgcataaaggcgactaact 258 || ||||| || |||||||| ||||| ||||| |||||| | ||||| |||||||| | | Sbjct: 1082 ccttccatagagatgatttgcaggtcaccaccaaaatatcgagcatacaggcgactgatt 1023 Query: 259 ggaagtccaaaaccatatccagccatagttactccttcactagggccctctatatcaggt 318 ||||| ||| | |||||||||||||||||||||||||||||||||| || ||||||||| Sbjct: 1022 ggaagaccatagccatatccagccatagttactccttcactagggcaatccatatcaggt 963 Query: 319 agattttttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctccgtatt 378 |||| ||||||||||| || ||||||||||||||||| || || || || || ||||| Sbjct: 962 ggattctttgcagtgctatatagatatgtgaaaattcttggaaggccgctccttggtatt 903 Query: 379 ccaccaccttcatcactgaccttaatagtaacatcctctgttccatcagcaactataatt 438 ||||||||||||||||| ||||| ||||| |||||||||| ||||||||||| |||||| Sbjct: 902 ccaccaccttcatcactaaccttgatagttacatcctctgccccatcagcaacgataatt 843 Query: 439 ctgacaggaggaacatctttatcagaatccatatatctttcctgtactgcacgaagggaa 498 || || ||||||||||||||||| |||| |||||||| ||||||||||||||| | ||| Sbjct: 842 ctaactggaggaacatctttatcggaattcatatatcgttcctgtactgcacgcaaggag 783 Query: 499 tttttcaccagttcaaacagcatgaga 525 || ||||||| |||||| ||||||||| Sbjct: 782 ttcttcaccaattcaaatagcatgaga 756
>dbj|AK069157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007C01, full insert sequence Length = 1422 Score = 385 bits (194), Expect = e-103 Identities = 432/507 (85%), Gaps = 7/507 (1%) Strand = Plus / Minus Query: 24 ttaacagctatatatggctggcccttgaaa-caatatttgcaaaccagcacggggattac 82 |||||||||||| |||||||| ||||||| ||||||| ||||||||| | || ||||| Sbjct: 1202 ttaacagctataggtggctggcacttgaaaacaatattc-caaaccagcccaggaattac 1144 Query: 83 aataagcaagagcagcctaatta----cagaaattgtatcagaacaggaggggccattaa 138 || | |||||||| |||||||| |||| || ||||||| ||||| | ||| | || Sbjct: 1143 aagagacaagagcaacctaattaattacagagatggtatcaggacagg-gaagccttcaa 1085 Query: 139 ggcaatggctcctctgagtctcccagccgtgacaagtggaggtaagcatcggtgccgtat 198 ||||| |||||||| || ||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 1084 ggcaagggctcctccgaatctcccaaccgtgacaagtgcaggtaagcatcggtgccgtat 1025 Query: 199 ccctccatggatatgatttgtaggtcgccaccgaaatattgcgcataaaggcgactaact 258 || ||||| || |||||||| ||||| ||||| |||||| | ||||| |||||||| | | Sbjct: 1024 ccttccatagagatgatttgcaggtcaccaccaaaatatcgagcatacaggcgactgatt 965 Query: 259 ggaagtccaaaaccatatccagccatagttactccttcactagggccctctatatcaggt 318 ||||| ||| | |||||||||||||||||||||||||||||||||| || ||||||||| Sbjct: 964 ggaagaccatagccatatccagccatagttactccttcactagggcaatccatatcaggt 905 Query: 319 agattttttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctccgtatt 378 |||| ||||||||||| || ||||||||||||||||| || || || || || ||||| Sbjct: 904 ggattctttgcagtgctatatagatatgtgaaaattcttggaaggccgctccttggtatt 845 Query: 379 ccaccaccttcatcactgaccttaatagtaacatcctctgttccatcagcaactataatt 438 ||||||||||||||||| ||||| ||||| |||||||||| ||||||||||| |||||| Sbjct: 844 ccaccaccttcatcactaaccttgatagttacatcctctgccccatcagcaacgataatt 785 Query: 439 ctgacaggaggaacatctttatcagaatccatatatctttcctgtactgcacgaagggaa 498 || || ||||||||||||||||| |||| |||||||| ||||||||||||||| | ||| Sbjct: 784 ctaactggaggaacatctttatcggaattcatatatcgttcctgtactgcacgcaaggag 725 Query: 499 tttttcaccagttcaaacagcatgaga 525 || ||||||| |||||| ||||||||| Sbjct: 724 ttcttcaccaattcaaatagcatgaga 698
>ref|XM_479264.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1092 Score = 375 bits (189), Expect = e-100 Identities = 339/389 (87%) Strand = Plus / Minus Query: 137 aaggcaatggctcctctgagtctcccagccgtgacaagtggaggtaagcatcggtgccgt 196 ||||||| |||||||| || ||||||| |||||||||||| ||||||||||||||||||| Sbjct: 1090 aaggcaagggctcctccgaatctcccaaccgtgacaagtgcaggtaagcatcggtgccgt 1031 Query: 197 atccctccatggatatgatttgtaggtcgccaccgaaatattgcgcataaaggcgactaa 256 |||| ||||| || |||||||| ||||| ||||| |||||| | ||||| |||||||| | Sbjct: 1030 atccttccatagagatgatttgcaggtcaccaccaaaatatcgagcatacaggcgactga 971 Query: 257 ctggaagtccaaaaccatatccagccatagttactccttcactagggccctctatatcag 316 |||||| ||| | |||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 970 ttggaagaccatagccatatccagccatagttactccttcactagggcaatccatatcag 911 Query: 317 gtagattttttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctccgta 376 || |||| ||||||||||| || ||||||||||||||||| || || || || || ||| Sbjct: 910 gtggattctttgcagtgctatatagatatgtgaaaattcttggaaggccgctccttggta 851 Query: 377 ttccaccaccttcatcactgaccttaatagtaacatcctctgttccatcagcaactataa 436 ||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||| |||| Sbjct: 850 ttccaccaccttcatcactaaccttgatagttacatcctctgccccatcagcaacgataa 791 Query: 437 ttctgacaggaggaacatctttatcagaatccatatatctttcctgtactgcacgaaggg 496 |||| || ||||||||||||||||| |||| |||||||| ||||||||||||||| | || Sbjct: 790 ttctaactggaggaacatctttatcggaattcatatatcgttcctgtactgcacgcaagg 731 Query: 497 aatttttcaccagttcaaacagcatgaga 525 | || ||||||| |||||| ||||||||| Sbjct: 730 agttcttcaccaattcaaatagcatgaga 702
>gb|AF323611.1|AF323611 Oryza sativa pyruvate dehydrogenase kinase (PDK) mRNA, partial cds Length = 1405 Score = 254 bits (128), Expect = 3e-64 Identities = 327/389 (84%), Gaps = 7/389 (1%) Strand = Plus / Minus Query: 24 ttaacagctatatatggctggcccttgaaa-caatatttgcaaaccagcacggggattac 82 |||||||||||| |||||||| ||||||| ||||||| ||||||||| | || ||||| Sbjct: 1146 ttaacagctataggtggctggcacttgaaaacaatattc-caaaccagcccaggaattac 1088 Query: 83 aataagcaagagcagcctaatta----cagaaattgtatcagaacaggaggggccattaa 138 || | |||||||| |||||||| |||| || ||||||| ||||| | ||| | || Sbjct: 1087 aagagacaagagcaacctaattaattacagagatggtatcaggacagg-gaagccttcaa 1029 Query: 139 ggcaatggctcctctgagtctcccagccgtgacaagtggaggtaagcatcggtgccgtat 198 ||||| |||||||| || ||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 1028 ggcaagggctcctccgaatctcccaaccgtgacaagtgcaggtaagcatcggtgccgtat 969 Query: 199 ccctccatggatatgatttgtaggtcgccaccgaaatattgcgcataaaggcgactaact 258 || ||||| || |||||||| ||||| ||||| |||||| | ||||| |||||||| | | Sbjct: 968 ccttccatagagatgatttgcaggtcaccaccaaaatatcgagcatacaggcgactgatt 909 Query: 259 ggaagtccaaaaccatatccagccatagttactccttcactagggccctctatatcaggt 318 ||||| ||| | |||||||||||||||||||||||||||||||||| || ||||||||| Sbjct: 908 ggaagaccatagccatatccagccatagttactccttcactagggcaatccatatcaggt 849 Query: 319 agattttttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctccgtatt 378 |||| ||||||||||| || || |||||||||||||| || || || || || |||| Sbjct: 848 ggattctttgcagtgctatataggtatgtgaaaattcttggaaggccgctccttggtatc 789 Query: 379 ccaccaccttcatcactgaccttaatagt 407 ||||||||||||||||| ||||| ||||| Sbjct: 788 ccaccaccttcatcactaaccttgatagt 760 Score = 58.0 bits (29), Expect = 3e-05 Identities = 60/69 (86%), Gaps = 1/69 (1%) Strand = Plus / Minus Query: 421 ccatcagcaactataattctgacaggaggaacatctttatcagaatccatatatc-tttc 479 ||||||||||| |||||||| || ||||||||||||| ||| ||| |||||||| || | Sbjct: 752 ccatcagcaacgataattctaactggaggaacatcttcatcggaactcatatatcgttcc 693 Query: 480 ctgtactgc 488 ||||||||| Sbjct: 692 ctgtactgc 684
>gb|AF038585.1|AF038585 Zea mays pyruvate dehydrogenase kinase isoform 1 mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 1380 Score = 230 bits (116), Expect = 4e-57 Identities = 311/376 (82%) Strand = Plus / Minus Query: 134 attaaggcaatggctcctctgagtctcccagccgtgacaagtggaggtaagcatcggtgc 193 |||| ||||| || ||||| || |||||||||||||| | ||||||||||||||| || | Sbjct: 1147 attacggcaagggttcctccgaatctcccagccgtgaaaggtggaggtaagcatcagttc 1088 Query: 194 cgtatccctccatggatatgatttgtaggtcgccaccgaaatattgcgcataaaggcgac 253 | ||||| ||||| || ||||| || | ||| |||||||||||| | ||||||||||||| Sbjct: 1087 catatccttccatagagatgatctgcaagtccccaccgaaatatcgagcataaaggcgac 1028 Query: 254 taactggaagtccaaaaccatatccagccatagttactccttcactagggccctctatat 313 ||| || | ||| ||||||||||||||||||||||||||||| || | || || | || Sbjct: 1027 taatagggatcccataaccatatccagccatagttactccttcattatgtccgtccagat 968 Query: 314 caggtagattttttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctcc 373 |||| | |||| ||| || || || ||||| || |||||||| | ||||||||| || Sbjct: 967 caggagggttttctgctgtactatagagatacgtaaaaattcttgagagcccactccttg 908 Query: 374 gtattccaccaccttcatcactgaccttaatagtaacatcctctgttccatcagcaacta 433 |||||||||||||||||||||| | ||||||||| |||||||||| |||||||||||||| Sbjct: 907 gtattccaccaccttcatcactaatcttaatagttacatcctctgctccatcagcaacta 848 Query: 434 taattctgacaggaggaacatctttatcagaatccatatatctttcctgtactgcacgaa 493 | |||| || ||||| || ||||||||||||||||| | ||||||||| || |||| Sbjct: 847 tgattcgaactggaggtgcaagcttatcagaatccatataccgttcctgtaccgcgcgaa 788 Query: 494 gggaatttttcaccag 509 |||| || |||||||| Sbjct: 787 gggagttcttcaccag 772
>gb|AY109472.1| Zea mays CL1702_1 mRNA sequence Length = 1438 Score = 222 bits (112), Expect = 9e-55 Identities = 310/376 (82%) Strand = Plus / Minus Query: 134 attaaggcaatggctcctctgagtctcccagccgtgacaagtggaggtaagcatcggtgc 193 |||| ||||| || ||||| || |||||||||||||| | ||||||||||||||| || | Sbjct: 1147 attacggcaagggttcctccgaatctcccagccgtgaaaggtggaggtaagcatcagttc 1088 Query: 194 cgtatccctccatggatatgatttgtaggtcgccaccgaaatattgcgcataaaggcgac 253 | ||||| ||||| || ||||| || | ||| |||||||||||| | ||||||||||||| Sbjct: 1087 catatccttccatagagatgatctgcaagtccccaccgaaatatcgagcataaaggcgac 1028 Query: 254 taactggaagtccaaaaccatatccagccatagttactccttcactagggccctctatat 313 ||| || | ||| ||||||||||||||||||||||||||||| || | || || | || Sbjct: 1027 taatagggatcccataaccatatccagccatagttactccttcattatgtccatccagat 968 Query: 314 caggtagattttttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctcc 373 |||| | |||| ||| || || || ||||| || ||||||| | ||||||||| || Sbjct: 967 caggagggttttctgctgtactatagagatacgtagaaattcttgagagcccactccttg 908 Query: 374 gtattccaccaccttcatcactgaccttaatagtaacatcctctgttccatcagcaacta 433 |||||||||||||||||||||| | ||||||||| |||||||||| |||||||||||||| Sbjct: 907 gtattccaccaccttcatcactaatcttaatagttacatcctctgctccatcagcaacta 848 Query: 434 taattctgacaggaggaacatctttatcagaatccatatatctttcctgtactgcacgaa 493 | |||| || ||||| || ||||||||||||||||| | ||||||||| || |||| Sbjct: 847 tgattcgaactggaggtgcaagcttatcagaatccatataccgttcctgtaccgcgcgaa 788 Query: 494 gggaatttttcaccag 509 |||| || |||||||| Sbjct: 787 gggagttcttcaccag 772
>ref|NM_184931.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1453 Score = 210 bits (106), Expect = 3e-51 Identities = 310/378 (82%) Strand = Plus / Minus Query: 140 gcaatggctcctctgagtctcccagccgtgacaagtggaggtaagcatcggtgccgtatc 199 |||| |||||||| || ||||| |||||||| | |||||||||||||||||| || |||| Sbjct: 1255 gcaagggctcctccgaatctcctagccgtgataggtggaggtaagcatcggttccatatc 1196 Query: 200 cctccatggatatgatttgtaggtcgccaccgaaatattgcgcataaaggcgactaactg 259 | ||||| || ||||| || ||||| || || |||||| | |||||||| || |||| | Sbjct: 1195 cttccatagaaatgatctgcaggtccccgccaaaatatcgagcataaagacggctaatcg 1136 Query: 260 gaagtccaaaaccatatccagccatagttactccttcactagggccctctatatcaggta 319 | | ||| | || || || ||||| || |||||||| || |||| || | ||||||| Sbjct: 1135 ggatcccatagccgtacccggccatggtcactccttcgttacggccatccagatcaggtg 1076 Query: 320 gattttttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctccgtattc 379 | |||| ||| |||||||| ||||||||||||||||| | ||| |||||||| |||||| Sbjct: 1075 ggttttctgctgtgctgtagagatatgtgaaaattctcgagagaccacttctgggtattc 1016 Query: 380 caccaccttcatcactgaccttaatagtaacatcctctgttccatcagcaactataattc 439 |||||||||||||||| | ||| || || || ||||||| ||||||||| ||||| |||| Sbjct: 1015 caccaccttcatcactaatcttgattgttacgtcctctgctccatcagcgactatgattc 956 Query: 440 tgacaggaggaacatctttatcagaatccatatatctttcctgtactgcacgaagggaat 499 | |||||||| ||| |||||||| | |||||||| ||||||||||||||| ||||||| Sbjct: 955 taacaggaggcgcatgcttatcagagttcatatatcgttcctgtactgcacggagggaat 896 Query: 500 ttttcaccagttcaaaca 517 | ||||||| |||||||| Sbjct: 895 tcttcaccaattcaaaca 878
>dbj|AK100033.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149J07, full insert sequence Length = 1535 Score = 210 bits (106), Expect = 3e-51 Identities = 310/378 (82%) Strand = Plus / Minus Query: 140 gcaatggctcctctgagtctcccagccgtgacaagtggaggtaagcatcggtgccgtatc 199 |||| |||||||| || ||||| |||||||| | |||||||||||||||||| || |||| Sbjct: 1266 gcaagggctcctccgaatctcctagccgtgataggtggaggtaagcatcggttccatatc 1207 Query: 200 cctccatggatatgatttgtaggtcgccaccgaaatattgcgcataaaggcgactaactg 259 | ||||| || ||||| || ||||| || || |||||| | |||||||| || |||| | Sbjct: 1206 cttccatagaaatgatctgcaggtccccgccaaaatatcgagcataaagacggctaatcg 1147 Query: 260 gaagtccaaaaccatatccagccatagttactccttcactagggccctctatatcaggta 319 | | ||| | || || || ||||| || |||||||| || |||| || | ||||||| Sbjct: 1146 ggatcccatagccgtacccggccatggtcactccttcgttacggccatccagatcaggtg 1087 Query: 320 gattttttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctccgtattc 379 | |||| ||| |||||||| ||||||||||||||||| | ||| |||||||| |||||| Sbjct: 1086 ggttttctgctgtgctgtagagatatgtgaaaattctcgagagaccacttctgggtattc 1027 Query: 380 caccaccttcatcactgaccttaatagtaacatcctctgttccatcagcaactataattc 439 |||||||||||||||| | ||| || || || ||||||| ||||||||| ||||| |||| Sbjct: 1026 caccaccttcatcactaatcttgattgttacgtcctctgctccatcagcgactatgattc 967 Query: 440 tgacaggaggaacatctttatcagaatccatatatctttcctgtactgcacgaagggaat 499 | |||||||| ||| |||||||| | |||||||| ||||||||||||||| ||||||| Sbjct: 966 taacaggaggcgcatgcttatcagagttcatatatcgttcctgtactgcacggagggaat 907 Query: 500 ttttcaccagttcaaaca 517 | ||||||| |||||||| Sbjct: 906 tcttcaccaattcaaaca 889
>gb|AF038586.1|AF038586 Zea mays pyruvate dehydrogenase kinase isoform 2 mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 1602 Score = 210 bits (106), Expect = 3e-51 Identities = 282/340 (82%), Gaps = 3/340 (0%) Strand = Plus / Minus Query: 137 aaggcaatggctcctctgagtctcccagccgtgacaagtggaggtaagcatcggtgccgt 196 ||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||| Sbjct: 1170 aaggcaagggctcctctgaatctcccagccgcgacaagtggaggtaagcatcggtaccgt 1111 Query: 197 atccctccatggatatgatttgtaggtcgccaccgaaatattgcgcataaaggcgactaa 256 |||| ||||| || |||||||| |||||||| || ||||| | || || || || || | Sbjct: 1110 atccttccatcgagatgatttgcaggtcgccgccaaaataccgagcgtagagtcggctga 1051 Query: 257 ctggaagtccaaaaccatatccagccatagttactccttcacta---gggccctctatat 313 || || || |||||||| |||||||||||||| | |||| || || | |||| | Sbjct: 1050 tcgggagcccgaaaccatacccagccatagttaccctttcagtattaggtctatctagct 991 Query: 314 caggtagattttttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctcc 373 |||| |||| ||||| |||||||| ||||| ||||||||||| ||||| || ||||| Sbjct: 990 caggaggattctttgcggtgctgtacagatacgtgaaaattctcgggaggccgcttcttg 931 Query: 374 gtattccaccaccttcatcactgaccttaatagtaacatcctctgttccatcagcaacta 433 |||| || ||||||||||| || ||||| ||||||||||||||| |||||||||||||| Sbjct: 930 gtatcccgccaccttcatcgctaaccttgatagtaacatcctcttctccatcagcaacta 871 Query: 434 taattctgacaggaggaacatctttatcagaatccatata 473 ||||||| || || ||||||||||||||||| | |||||| Sbjct: 870 taattctaaccgggggaacatctttatcagagttcatata 831
>gb|AY110322.1| Zea mays CL1703_1 mRNA sequence Length = 1546 Score = 196 bits (99), Expect = 5e-47 Identities = 279/340 (82%), Gaps = 3/340 (0%) Strand = Plus / Minus Query: 137 aaggcaatggctcctctgagtctcccagccgtgacaagtggaggtaagcatcggtgccgt 196 ||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||| Sbjct: 1170 aaggcaagggctcctctgaatctcccagccgcgacaagtggaggtaagcatcggtaccgt 1111 Query: 197 atccctccatggatatgatttgtaggtcgccaccgaaatattgcgcataaaggcgactaa 256 |||| ||||| || |||||||| |||||||| || ||||| | || || || || || | Sbjct: 1110 atccttccatcgagatgatttgcaggtcgccgccaaaataccgagcgtagagtcggctga 1051 Query: 257 ctggaagtccaaaaccatatccagccatagttactccttcacta---gggccctctatat 313 || || || |||||||| |||||||||||||| |||||| || || | |||| | Sbjct: 1050 tcgggagcccgaaaccatacccagccatagttaccccttcagtattaggtctatctagct 991 Query: 314 caggtagattttttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctcc 373 |||| |||| ||||| |||||||| ||||| ||||||||||| ||||| || ||||| Sbjct: 990 caggaggattctttgcggtgctgtacagatacgtgaaaattctcgggaggccgcttcttg 931 Query: 374 gtattccaccaccttcatcactgaccttaatagtaacatcctctgttccatcagcaacta 433 |||| || ||||||||||| || ||||| ||||||||||||||| |||||||||||||| Sbjct: 930 gtatcccgccaccttcatcgctaaccttgatagtaacatcctcttctccatcagcaacta 871 Query: 434 taattctgacaggaggaacatctttatcagaatccatata 473 ||||||| || ||||||||||||||| | |||||| Sbjct: 870 taattctaaccnnnnnaacatctttatcagagttcatata 831
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 182 bits (92), Expect = 8e-43 Identities = 179/208 (86%) Strand = Plus / Plus Query: 193 ccgtatccctccatggatatgatttgtaggtcgccaccgaaatattgcgcataaaggcga 252 |||||||| ||||| || |||||||| ||||| ||||| |||||| | ||||| |||||| Sbjct: 26428573 ccgtatccttccatagagatgatttgcaggtcaccaccaaaatatcgagcatacaggcga 26428632 Query: 253 ctaactggaagtccaaaaccatatccagccatagttactccttcactagggccctctata 312 || | |||||| ||| | |||||||||||||||||||||||||||||||||| || ||| Sbjct: 26428633 ctgattggaagaccatagccatatccagccatagttactccttcactagggcaatccata 26428692 Query: 313 tcaggtagattttttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctc 372 |||||| |||| ||||||||||| || ||||||||||||||||| || || || || || Sbjct: 26428693 tcaggtggattctttgcagtgctatatagatatgtgaaaattcttggaaggccgctcctt 26428752 Query: 373 cgtattccaccaccttcatcactgacct 400 |||||||||||||||||||||| |||| Sbjct: 26428753 ggtattccaccaccttcatcactaacct 26428780 Score = 129 bits (65), Expect = 1e-26 Identities = 113/129 (87%) Strand = Plus / Plus Query: 397 accttaatagtaacatcctctgttccatcagcaactataattctgacaggaggaacatct 456 ||||| ||||| |||||||||| ||||||||||| |||||||| || |||||||||||| Sbjct: 26429510 accttgatagttacatcctctgccccatcagcaacgataattctaactggaggaacatct 26429569 Query: 457 ttatcagaatccatatatctttcctgtactgcacgaagggaatttttcaccagttcaaac 516 ||||| |||| |||||||| ||||||||||||||| | ||| || ||||||| |||||| Sbjct: 26429570 ttatcggaattcatatatcgttcctgtactgcacgcaaggagttcttcaccaattcaaat 26429629 Query: 517 agcatgaga 525 ||||||||| Sbjct: 26429630 agcatgaga 26429638 Score = 85.7 bits (43), Expect = 1e-13 Identities = 146/176 (82%), Gaps = 7/176 (3%) Strand = Plus / Plus Query: 24 ttaacagctatatatggctggcccttgaaa-caatatttgcaaaccagcacggggattac 82 |||||||||||| |||||||| ||||||| ||||||| ||||||||| | || ||||| Sbjct: 26428142 ttaacagctataggtggctggcacttgaaaacaatattc-caaaccagcccaggaattac 26428200 Query: 83 aataagcaagagcagcctaatta----cagaaattgtatcagaacaggaggggccattaa 138 || | |||||||| |||||||| |||| || ||||||| ||||| | ||| | || Sbjct: 26428201 aagagacaagagcaacctaattaattacagagatggtatcaggacagg-gaagccttcaa 26428259 Query: 139 ggcaatggctcctctgagtctcccagccgtgacaagtggaggtaagcatcggtgcc 194 ||||| |||||||| || ||||||| |||||||||||| ||||||||||||||||| Sbjct: 26428260 ggcaagggctcctccgaatctcccaaccgtgacaagtgcaggtaagcatcggtgcc 26428315
>dbj|AP003749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_D11 Length = 109399 Score = 182 bits (92), Expect = 8e-43 Identities = 179/208 (86%) Strand = Plus / Plus Query: 193 ccgtatccctccatggatatgatttgtaggtcgccaccgaaatattgcgcataaaggcga 252 |||||||| ||||| || |||||||| ||||| ||||| |||||| | ||||| |||||| Sbjct: 82813 ccgtatccttccatagagatgatttgcaggtcaccaccaaaatatcgagcatacaggcga 82872 Query: 253 ctaactggaagtccaaaaccatatccagccatagttactccttcactagggccctctata 312 || | |||||| ||| | |||||||||||||||||||||||||||||||||| || ||| Sbjct: 82873 ctgattggaagaccatagccatatccagccatagttactccttcactagggcaatccata 82932 Query: 313 tcaggtagattttttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctc 372 |||||| |||| ||||||||||| || ||||||||||||||||| || || || || || Sbjct: 82933 tcaggtggattctttgcagtgctatatagatatgtgaaaattcttggaaggccgctcctt 82992 Query: 373 cgtattccaccaccttcatcactgacct 400 |||||||||||||||||||||| |||| Sbjct: 82993 ggtattccaccaccttcatcactaacct 83020 Score = 129 bits (65), Expect = 1e-26 Identities = 113/129 (87%) Strand = Plus / Plus Query: 397 accttaatagtaacatcctctgttccatcagcaactataattctgacaggaggaacatct 456 ||||| ||||| |||||||||| ||||||||||| |||||||| || |||||||||||| Sbjct: 83750 accttgatagttacatcctctgccccatcagcaacgataattctaactggaggaacatct 83809 Query: 457 ttatcagaatccatatatctttcctgtactgcacgaagggaatttttcaccagttcaaac 516 ||||| |||| |||||||| ||||||||||||||| | ||| || ||||||| |||||| Sbjct: 83810 ttatcggaattcatatatcgttcctgtactgcacgcaaggagttcttcaccaattcaaat 83869 Query: 517 agcatgaga 525 ||||||||| Sbjct: 83870 agcatgaga 83878 Score = 85.7 bits (43), Expect = 1e-13 Identities = 146/176 (82%), Gaps = 7/176 (3%) Strand = Plus / Plus Query: 24 ttaacagctatatatggctggcccttgaaa-caatatttgcaaaccagcacggggattac 82 |||||||||||| |||||||| ||||||| ||||||| ||||||||| | || ||||| Sbjct: 82382 ttaacagctataggtggctggcacttgaaaacaatattc-caaaccagcccaggaattac 82440 Query: 83 aataagcaagagcagcctaatta----cagaaattgtatcagaacaggaggggccattaa 138 || | |||||||| |||||||| |||| || ||||||| ||||| | ||| | || Sbjct: 82441 aagagacaagagcaacctaattaattacagagatggtatcaggacagg-gaagccttcaa 82499 Query: 139 ggcaatggctcctctgagtctcccagccgtgacaagtggaggtaagcatcggtgcc 194 ||||| |||||||| || ||||||| |||||||||||| ||||||||||||||||| Sbjct: 82500 ggcaagggctcctccgaatctcccaaccgtgacaagtgcaggtaagcatcggtgcc 82555
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 99.6 bits (50), Expect = 9e-18 Identities = 92/106 (86%) Strand = Plus / Minus Query: 412 tcctctgttccatcagcaactataattctgacaggaggaacatctttatcagaatccata 471 ||||||| ||||||||| ||||| ||||| |||||||| ||| |||||||| | |||| Sbjct: 14367300 tcctctgctccatcagcgactatgattctaacaggaggcgcatgcttatcagagttcata 14367241 Query: 472 tatctttcctgtactgcacgaagggaatttttcaccagttcaaaca 517 |||| ||||||||||||||| |||||||| ||||||| |||||||| Sbjct: 14367240 tatcgttcctgtactgcacggagggaattcttcaccaattcaaaca 14367195 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 312 atcaggtagattttttgcagtgctgtaaagatatgtgaaaattctagggagcccacttct 371 ||||||| | |||| ||| |||||||| ||||||||||||||||| | ||| |||||||| Sbjct: 14367947 atcaggtgggttttctgctgtgctgtagagatatgtgaaaattctcgagagaccacttct 14367888 Query: 372 ccgtattccaccaccttcatcact 395 |||||||||||||||||||||| Sbjct: 14367887 gggtattccaccaccttcatcact 14367864 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 140 gcaatggctcctctgagtctcccagccgtgacaagtggaggtaagcatcggt 191 |||| |||||||| || ||||| |||||||| | |||||||||||||||||| Sbjct: 14368382 gcaagggctcctccgaatctcctagccgtgataggtggaggtaagcatcggt 14368331
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 99.6 bits (50), Expect = 9e-18 Identities = 92/106 (86%) Strand = Plus / Minus Query: 412 tcctctgttccatcagcaactataattctgacaggaggaacatctttatcagaatccata 471 ||||||| ||||||||| ||||| ||||| |||||||| ||| |||||||| | |||| Sbjct: 116529 tcctctgctccatcagcgactatgattctaacaggaggcgcatgcttatcagagttcata 116470 Query: 472 tatctttcctgtactgcacgaagggaatttttcaccagttcaaaca 517 |||| ||||||||||||||| |||||||| ||||||| |||||||| Sbjct: 116469 tatcgttcctgtactgcacggagggaattcttcaccaattcaaaca 116424 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 312 atcaggtagattttttgcagtgctgtaaagatatgtgaaaattctagggagcccacttct 371 ||||||| | |||| ||| |||||||| ||||||||||||||||| | ||| |||||||| Sbjct: 117176 atcaggtgggttttctgctgtgctgtagagatatgtgaaaattctcgagagaccacttct 117117 Query: 372 ccgtattccaccaccttcatcact 395 |||||||||||||||||||||| Sbjct: 117116 gggtattccaccaccttcatcact 117093 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 140 gcaatggctcctctgagtctcccagccgtgacaagtggaggtaagcatcggt 191 |||| |||||||| || ||||| |||||||| | |||||||||||||||||| Sbjct: 117611 gcaagggctcctccgaatctcctagccgtgataggtggaggtaagcatcggt 117560
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 99.6 bits (50), Expect = 9e-18 Identities = 92/106 (86%) Strand = Plus / Minus Query: 412 tcctctgttccatcagcaactataattctgacaggaggaacatctttatcagaatccata 471 ||||||| ||||||||| ||||| ||||| |||||||| ||| |||||||| | |||| Sbjct: 14362275 tcctctgctccatcagcgactatgattctaacaggaggcgcatgcttatcagagttcata 14362216 Query: 472 tatctttcctgtactgcacgaagggaatttttcaccagttcaaaca 517 |||| ||||||||||||||| |||||||| ||||||| |||||||| Sbjct: 14362215 tatcgttcctgtactgcacggagggaattcttcaccaattcaaaca 14362170 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 312 atcaggtagattttttgcagtgctgtaaagatatgtgaaaattctagggagcccacttct 371 ||||||| | |||| ||| |||||||| ||||||||||||||||| | ||| |||||||| Sbjct: 14362922 atcaggtgggttttctgctgtgctgtagagatatgtgaaaattctcgagagaccacttct 14362863 Query: 372 ccgtattccaccaccttcatcact 395 |||||||||||||||||||||| Sbjct: 14362862 gggtattccaccaccttcatcact 14362839 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 140 gcaatggctcctctgagtctcccagccgtgacaagtggaggtaagcatcggt 191 |||| |||||||| || ||||| |||||||| | |||||||||||||||||| Sbjct: 14363357 gcaagggctcctccgaatctcctagccgtgataggtggaggtaagcatcggt 14363306
>ref|NM_111524.3| Arabidopsis thaliana PDK (PYRUVATE DEHYDROGENASE KINASE); ATP binding / [pyruvate dehydrogenase (lipoamide)] kinase AT3G06483 (PDK) mRNA, complete cds Length = 1575 Score = 85.7 bits (43), Expect = 1e-13 Identities = 100/119 (84%) Strand = Plus / Minus Query: 169 gacaagtggaggtaagcatcggtgccgtatccctccatggatatgatttgtaggtcgcca 228 |||||||| | ||| ||||| || || ||||| |||||||||||||| || | || ||| Sbjct: 1230 gacaagtgcaagtatgcatcagtcccatatccttccatggatatgatctgcaaatctcca 1171 Query: 229 ccgaaatattgcgcataaaggcgactaactggaagtccaaaaccatatccagccatagt 287 ||||||||| | ||||| | |||||||| |||||| ||| ||||||||||||||||||| Sbjct: 1170 ccgaaatatcgagcatacaagcgactaattggaagaccataaccatatccagccatagt 1112 Score = 79.8 bits (40), Expect = 8e-12 Identities = 94/112 (83%) Strand = Plus / Minus Query: 326 ttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctccgtattccaccac 385 ||||||||||||||||||| ||||| ||||| || || || ||||| ||| || |||| Sbjct: 1061 ttgcagtgctgtaaagataggtgaatattctgggaagaccgcttcttgctatacctccac 1002 Query: 386 cttcatcactgaccttaatagtaacatcctctgttccatcagcaactataat 437 ||||||| |||||| ||||||||||| || ||||||||||||||||||| Sbjct: 1001 cttcatctgagacctttatagtaacatcttcgattccatcagcaactataat 950
>gb|AY059083.1| Arabidopsis thaliana putative pyruvate dehydrogenase kinase (At3g06483) mRNA, complete cds Length = 1132 Score = 85.7 bits (43), Expect = 1e-13 Identities = 100/119 (84%) Strand = Plus / Minus Query: 169 gacaagtggaggtaagcatcggtgccgtatccctccatggatatgatttgtaggtcgcca 228 |||||||| | ||| ||||| || || ||||| |||||||||||||| || | || ||| Sbjct: 1067 gacaagtgcaagtatgcatcagtcccatatccttccatggatatgatctgcaaatctcca 1008 Query: 229 ccgaaatattgcgcataaaggcgactaactggaagtccaaaaccatatccagccatagt 287 ||||||||| | ||||| | |||||||| |||||| ||| ||||||||||||||||||| Sbjct: 1007 ccgaaatatcgagcatacaagcgactaattggaagaccataaccatatccagccatagt 949 Score = 79.8 bits (40), Expect = 8e-12 Identities = 94/112 (83%) Strand = Plus / Minus Query: 326 ttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctccgtattccaccac 385 ||||||||||||||||||| ||||| ||||| || || || ||||| ||| || |||| Sbjct: 898 ttgcagtgctgtaaagataggtgaatattctgggaagaccgcttcttgctatacctccac 839 Query: 386 cttcatcactgaccttaatagtaacatcctctgttccatcagcaactataat 437 ||||||| |||||| ||||||||||| || ||||||||||||||||||| Sbjct: 838 cttcatctgagacctttatagtaacatcttcgattccatcagcaactataat 787
>gb|AY035017.1| Arabidopsis thaliana putative pyruvate dehydrogenase kinase (At3g06483) mRNA, complete cds Length = 1483 Score = 85.7 bits (43), Expect = 1e-13 Identities = 100/119 (84%) Strand = Plus / Minus Query: 169 gacaagtggaggtaagcatcggtgccgtatccctccatggatatgatttgtaggtcgcca 228 |||||||| | ||| ||||| || || ||||| |||||||||||||| || | || ||| Sbjct: 1210 gacaagtgcaagtatgcatcagtcccatatccttccatggatatgatctgcaaatctcca 1151 Query: 229 ccgaaatattgcgcataaaggcgactaactggaagtccaaaaccatatccagccatagt 287 ||||||||| | ||||| | |||||||| |||||| ||| ||||||||||||||||||| Sbjct: 1150 ccgaaatatcgagcatacaagcgactaattggaagaccataaccatatccagccatagt 1092 Score = 79.8 bits (40), Expect = 8e-12 Identities = 94/112 (83%) Strand = Plus / Minus Query: 326 ttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctccgtattccaccac 385 ||||||||||||||||||| ||||| ||||| || || || ||||| ||| || |||| Sbjct: 1041 ttgcagtgctgtaaagataggtgaatattctgggaagaccgcttcttgctatacctccac 982 Query: 386 cttcatcactgaccttaatagtaacatcctctgttccatcagcaactataat 437 ||||||| |||||| ||||||||||| || ||||||||||||||||||| Sbjct: 981 cttcatctgagacctttatagtaacatcttcgattccatcagcaactataat 930
>emb|BX825037.1|CNS0A6XJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH90ZH04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1350 Score = 85.7 bits (43), Expect = 1e-13 Identities = 100/119 (84%) Strand = Plus / Minus Query: 169 gacaagtggaggtaagcatcggtgccgtatccctccatggatatgatttgtaggtcgcca 228 |||||||| | ||| ||||| || || ||||| |||||||||||||| || | || ||| Sbjct: 1210 gacaagtgcaagtatgcatcagtcccatatccttccatggatatgatctgcaaatctcca 1151 Query: 229 ccgaaatattgcgcataaaggcgactaactggaagtccaaaaccatatccagccatagt 287 ||||||||| | ||||| | |||||||| |||||| ||| ||||||||||||||||||| Sbjct: 1150 ccgaaatatcgagcatacaagcgactaattggaagaccataaccatatccagccatagt 1092 Score = 79.8 bits (40), Expect = 8e-12 Identities = 94/112 (83%) Strand = Plus / Minus Query: 326 ttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctccgtattccaccac 385 ||||||||||||||||||| ||||| ||||| || || || ||||| ||| || |||| Sbjct: 1041 ttgcagtgctgtaaagataggtgaatattctgggaagaccgcttcttgctatacctccac 982 Query: 386 cttcatcactgaccttaatagtaacatcctctgttccatcagcaactataat 437 ||||||| |||||| ||||||||||| || ||||||||||||||||||| Sbjct: 981 cttcatctgagacctttatagtaacatcttcgattccatcagcaactataat 930
>emb|BX824559.1|CNS0A6R4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH56ZC08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1386 Score = 85.7 bits (43), Expect = 1e-13 Identities = 100/119 (84%) Strand = Plus / Minus Query: 169 gacaagtggaggtaagcatcggtgccgtatccctccatggatatgatttgtaggtcgcca 228 |||||||| | ||| ||||| || || ||||| |||||||||||||| || | || ||| Sbjct: 1200 gacaagtgcaagtatgcatcagtcccatatccttccatggatatgatctgcaaatctcca 1141 Query: 229 ccgaaatattgcgcataaaggcgactaactggaagtccaaaaccatatccagccatagt 287 ||||||||| | ||||| | |||||||| |||||| ||| ||||||||||||||||||| Sbjct: 1140 ccgaaatatcgagcatacaagcgactaattggaagaccataaccatatccagccatagt 1082 Score = 79.8 bits (40), Expect = 8e-12 Identities = 94/112 (83%) Strand = Plus / Minus Query: 326 ttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctccgtattccaccac 385 ||||||||||||||||||| ||||| ||||| || || || ||||| ||| || |||| Sbjct: 1031 ttgcagtgctgtaaagataggtgaatattctgggaagaccgcttcttgctatacctccac 972 Query: 386 cttcatcactgaccttaatagtaacatcctctgttccatcagcaactataat 437 ||||||| |||||| ||||||||||| || ||||||||||||||||||| Sbjct: 971 cttcatctgagacctttatagtaacatcttcgattccatcagcaactataat 920
>emb|BX823886.1|CNS0A6MN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS88ZG07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1397 Score = 85.7 bits (43), Expect = 1e-13 Identities = 100/119 (84%) Strand = Plus / Minus Query: 169 gacaagtggaggtaagcatcggtgccgtatccctccatggatatgatttgtaggtcgcca 228 |||||||| | ||| ||||| || || ||||| |||||||||||||| || | || ||| Sbjct: 1227 gacaagtgcaagtatgcatcagtcccatatccttccatggatatgatctgcaaatctcca 1168 Query: 229 ccgaaatattgcgcataaaggcgactaactggaagtccaaaaccatatccagccatagt 287 ||||||||| | ||||| | |||||||| |||||| ||| ||||||||||||||||||| Sbjct: 1167 ccgaaatatcgagcatacaagcgactaattggaagaccataaccatatccagccatagt 1109 Score = 79.8 bits (40), Expect = 8e-12 Identities = 94/112 (83%) Strand = Plus / Minus Query: 326 ttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctccgtattccaccac 385 ||||||||||||||||||| ||||| ||||| || || || ||||| ||| || |||| Sbjct: 1058 ttgcagtgctgtaaagataggtgaatattctgggaagaccgcttcttgctatacctccac 999 Query: 386 cttcatcactgaccttaatagtaacatcctctgttccatcagcaactataat 437 ||||||| |||||| ||||||||||| || ||||||||||||||||||| Sbjct: 998 cttcatctgagacctttatagtaacatcttcgattccatcagcaactataat 947
>emb|BX823439.1|CNS0A6IR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS39ZG08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1329 Score = 85.7 bits (43), Expect = 1e-13 Identities = 100/119 (84%) Strand = Plus / Minus Query: 169 gacaagtggaggtaagcatcggtgccgtatccctccatggatatgatttgtaggtcgcca 228 |||||||| | ||| ||||| || || ||||| |||||||||||||| || | || ||| Sbjct: 1135 gacaagtgcaagtatgcatcagtcccatatccttccatggatatgatctgcaaatctcca 1076 Query: 229 ccgaaatattgcgcataaaggcgactaactggaagtccaaaaccatatccagccatagt 287 ||||||||| | ||||| | |||||||| |||||| ||| ||||||||||||||||||| Sbjct: 1075 ccgaaatatcgagcatacaagcgactaattggaagaccataaccatatccagccatagt 1017 Score = 79.8 bits (40), Expect = 8e-12 Identities = 94/112 (83%) Strand = Plus / Minus Query: 326 ttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctccgtattccaccac 385 ||||||||||||||||||| ||||| ||||| || || || ||||| ||| || |||| Sbjct: 966 ttgcagtgctgtaaagataggtgaatattctgggaagaccgcttcttgctatacctccac 907 Query: 386 cttcatcactgaccttaatagtaacatcctctgttccatcagcaactataat 437 ||||||| |||||| ||||||||||| || ||||||||||||||||||| Sbjct: 906 cttcatctgagacctttatagtaacatcttcgattccatcagcaactataat 855
>emb|BX823217.1|CNS0A4TA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS12ZA07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1360 Score = 85.7 bits (43), Expect = 1e-13 Identities = 100/119 (84%) Strand = Plus / Minus Query: 169 gacaagtggaggtaagcatcggtgccgtatccctccatggatatgatttgtaggtcgcca 228 |||||||| | ||| ||||| || || ||||| |||||||||||||| || | || ||| Sbjct: 1162 gacaagtgcaagtatgcatcagtcccatatccttccatggatatgatctgcaaatctcca 1103 Query: 229 ccgaaatattgcgcataaaggcgactaactggaagtccaaaaccatatccagccatagt 287 ||||||||| | ||||| | |||||||| |||||| ||| ||||||||||||||||||| Sbjct: 1102 ccgaaatatcgagcatacaagcgactaattggaagaccataaccatatccagccatagt 1044 Score = 79.8 bits (40), Expect = 8e-12 Identities = 94/112 (83%) Strand = Plus / Minus Query: 326 ttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctccgtattccaccac 385 ||||||||||||||||||| ||||| ||||| || || || ||||| ||| || |||| Sbjct: 993 ttgcagtgctgtaaagataggtgaatattctgggaagaccgcttcttgctatacctccac 934 Query: 386 cttcatcactgaccttaatagtaacatcctctgttccatcagcaactataat 437 ||||||| |||||| ||||||||||| || ||||||||||||||||||| Sbjct: 933 cttcatctgagacctttatagtaacatcttcgattccatcagcaactataat 882
>gb|AF039406.1|AF039406 Arabidopsis thaliana pyruvate dehydrogenase kinase (PDK) mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 1441 Score = 85.7 bits (43), Expect = 1e-13 Identities = 100/119 (84%) Strand = Plus / Minus Query: 169 gacaagtggaggtaagcatcggtgccgtatccctccatggatatgatttgtaggtcgcca 228 |||||||| | ||| ||||| || || ||||| |||||||||||||| || | || ||| Sbjct: 1196 gacaagtgcaagtatgcatcagtcccatatccttccatggatatgatctgcaaatctcca 1137 Query: 229 ccgaaatattgcgcataaaggcgactaactggaagtccaaaaccatatccagccatagt 287 ||||||||| | ||||| | |||||||| |||||| ||| ||||||||||||||||||| Sbjct: 1136 ccgaaatatcgagcatacaagcgactaattggaagaccataaccatatccagccatagt 1078 Score = 79.8 bits (40), Expect = 8e-12 Identities = 94/112 (83%) Strand = Plus / Minus Query: 326 ttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctccgtattccaccac 385 ||||||||||||||||||| ||||| ||||| || || || ||||| ||| || |||| Sbjct: 1027 ttgcagtgctgtaaagataggtgaatattctgggaagaccgcttcttgctatacctccac 968 Query: 386 cttcatcactgaccttaatagtaacatcctctgttccatcagcaactataat 437 ||||||| |||||| ||||||||||| || ||||||||||||||||||| Sbjct: 967 cttcatctgagacctttatagtaacatcttcgattccatcagcaactataat 916
>gb|AC011623.5|ATAC011623 Arabidopsis thaliana chromosome III BAC F24P17 genomic sequence, complete sequence Length = 86022 Score = 79.8 bits (40), Expect = 8e-12 Identities = 79/92 (85%) Strand = Plus / Minus Query: 196 tatccctccatggatatgatttgtaggtcgccaccgaaatattgcgcataaaggcgacta 255 ||||| |||||||||||||| || | || |||||||||||| | ||||| | ||||||| Sbjct: 1374 tatccttccatggatatgatctgcaaatctccaccgaaatatcgagcatacaagcgacta 1315 Query: 256 actggaagtccaaaaccatatccagccatagt 287 | |||||| ||| ||||||||||||||||||| Sbjct: 1314 attggaagaccataaccatatccagccatagt 1283 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 397 accttaatagtaacatcctctgttccatcagcaactataat 437 ||||| ||||||||||| || ||||||||||||||||||| Sbjct: 1065 acctttatagtaacatcttcgattccatcagcaactataat 1025 Score = 46.1 bits (23), Expect = 0.12 Identities = 56/67 (83%) Strand = Plus / Minus Query: 326 ttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctccgtattccaccac 385 ||||||||||||||||||| ||||| ||||| || || || ||||| ||| || |||| Sbjct: 1232 ttgcagtgctgtaaagataggtgaatattctgggaagaccgcttcttgctatacctccac 1173 Query: 386 cttcatc 392 ||||||| Sbjct: 1172 cttcatc 1166
>emb|AJ007312.1|ATH7312 Arabidopsis thaliana mRNA for pyruvate dehydrogenase kinase Length = 1457 Score = 79.8 bits (40), Expect = 8e-12 Identities = 94/112 (83%) Strand = Plus / Minus Query: 326 ttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctccgtattccaccac 385 ||||||||||||||||||| ||||| ||||| || || || ||||| ||| || |||| Sbjct: 1001 ttgcagtgctgtaaagataggtgaatattctgggaagaccgcttcttgctatacctccac 942 Query: 386 cttcatcactgaccttaatagtaacatcctctgttccatcagcaactataat 437 ||||||| |||||| ||||||||||| || ||||||||||||||||||| Sbjct: 941 cttcatctgagacctttatagtaacatcttcgattccatcagcaactataat 890 Score = 77.8 bits (39), Expect = 3e-11 Identities = 99/119 (83%) Strand = Plus / Minus Query: 169 gacaagtggaggtaagcatcggtgccgtatccctccatggatatgatttgtaggtcgcca 228 |||||||| | ||| ||||| || || ||||| |||||||||||||| || | || ||| Sbjct: 1170 gacaagtgcaagtatgcatcagtcccatatccttccatggatatgatctgcaaatctcca 1111 Query: 229 ccgaaatattgcgcataaaggcgactaactggaagtccaaaaccatatccagccatagt 287 ||||||||| | ||||| | |||||||| |||||| ||| ||||||||||| ||||||| Sbjct: 1110 ccgaaatatcgagcatacaagcgactaattggaagaccataaccatatccacccatagt 1052
>gb|AY589089.1| Glycine max mitochondrial pyruvate dehydrogenase kinase isoform 2 gene, complete cds; nuclear gene for mitochondrial product Length = 3415 Score = 69.9 bits (35), Expect = 8e-09 Identities = 65/75 (86%) Strand = Plus / Minus Query: 397 accttaatagtaacatcctctgttccatcagcaactataattctgacaggaggaacatct 456 ||||| || |||||||||||| |||||||||||||||| ||||| | ||||| || || Sbjct: 2313 acctttatggtaacatcctctattccatcagcaactattattctaatgggaggtgcaact 2254 Query: 457 ttatcagaatccata 471 ||||||||||||||| Sbjct: 2253 ttatcagaatccata 2239
>gb|DQ178966.1| Brassica napus mitochondrial pyruvate dehydrogenase kinase (PDK) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1104 Score = 67.9 bits (34), Expect = 3e-08 Identities = 118/146 (80%) Strand = Plus / Minus Query: 139 ggcaatggctcctctgagtctcccagccgtgacaagtggaggtaagcatcggtgccgtat 198 ||||| ||||| | ||| ||||| || || |||||||| | ||||||||| || |||||| Sbjct: 1100 ggcaaaggctcttgtgaatctccaagacgagacaagtgcaagtaagcatcagtcccgtat 1041 Query: 199 ccctccatggatatgatttgtaggtcgccaccgaaatattgcgcataaaggcgactaact 258 || |||||||||||||| || | || ||||| || ||| | ||||| | |||||||| | Sbjct: 1040 ccttccatggatatgatctgcaaatctccaccaaagtatcgagcatacaagcgactaatt 981 Query: 259 ggaagtccaaaaccatatccagccat 284 || || ||| ||||||| |||||||| Sbjct: 980 ggcagaccataaccataaccagccat 955 Score = 67.9 bits (34), Expect = 3e-08 Identities = 88/106 (83%) Strand = Plus / Minus Query: 326 ttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctccgtattccaccac 385 ||||||||||||||||||| ||||| ||| | ||||| || |||||| |||| || |||| Sbjct: 901 ttgcagtgctgtaaagataggtgaatattttggggagaccgcttctcggtatacctccac 842 Query: 386 cttcatcactgaccttaatagtaacatcctctgttccatcagcaac 431 ||||||| ||| || || |||||||| || ||||||||||||| Sbjct: 841 cttcatctgagacttttattgtaacatcttcgattccatcagcaac 796
>gb|DQ178967.1| Brassica napus mitochondrial pyruvate dehydrogenase kinase (PDK) gene, complete cds; nuclear gene for mitochondrial product Length = 2001 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 326 ttgcagtgctgtaaagatatgtgaaaattctagggagcccacttctccgtattccaccac 385 ||||||||||||||||||| ||||| ||| | ||||| || |||||| |||| || |||| Sbjct: 1695 ttgcagtgctgtaaagataggtgaatattttggggagaccgcttctcggtatacctccac 1636 Query: 386 cttcatc 392 ||||||| Sbjct: 1635 cttcatc 1629 Score = 48.1 bits (24), Expect = 0.029 Identities = 75/92 (81%) Strand = Plus / Minus Query: 193 ccgtatccctccatggatatgatttgtaggtcgccaccgaaatattgcgcataaaggcga 252 |||||||| |||||||||||||| || | || ||||| || ||| | ||||| | |||| Sbjct: 1840 ccgtatccttccatggatatgatctgcaaatctccaccaaagtatcgagcatacaagcga 1781 Query: 253 ctaactggaagtccaaaaccatatccagccat 284 |||| ||| || ||| ||||||| |||||||| Sbjct: 1780 ctaattggcagaccataaccataaccagccat 1749
>emb|AJ630654.1| Cicer arietinum mRNA for pyruvate dehydrogenase kinase (Pdk gene) Length = 1537 Score = 58.0 bits (29), Expect = 3e-05 Identities = 92/113 (81%) Strand = Plus / Minus Query: 328 gcagtgctgtaaagatatgtgaaaattctagggagcccacttctccgtattccaccacct 387 ||||| ||||| |||||||| |||||| | || || |||||||| ||||||||| || Sbjct: 1045 gcagtactgtacagatatgtaaaaattttgggcagaccacttcttgctattccacctccc 986 Query: 388 tcatcactgaccttaatagtaacatcctctgttccatcagcaactataattct 440 ||||| | ||| || |||||||||||| ||||||||||||||||||||| Sbjct: 985 tcatctgatatctttatggtaacatcctctagtccatcagcaactataattct 933 Score = 40.1 bits (20), Expect = 7.1 Identities = 95/120 (79%) Strand = Plus / Minus Query: 169 gacaagtggaggtaagcatcggtgccgtatccctccatggatatgatttgtaggtcgcca 228 ||||| ||||| || ||||| || |||||||| ||||| || || ||||| || || || Sbjct: 1216 gacaaatggagatatgcatcagttccgtatccttccatagagattatttgaagatcacct 1157 Query: 229 ccgaaatattgcgcataaaggcgactaactggaagtccaaaaccatatccagccatagtt 288 |||||||| | || || | ||||||| ||||| ||| | |||||||||||||||||| Sbjct: 1156 ccgaaataccgagcgtataaacgactaataggaaggccatatccatatccagccatagtt 1097
>gb|AY589088.1| Glycine max mitochondrial pyruvate dehydrogenase kinase isoform 1 gene, complete cds; nuclear gene for mitochondrial product Length = 3236 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 397 accttaatagtaacatcctctgttccatcagcaactataattct 440 ||||| || |||||||||||| |||||||||||||||| ||||| Sbjct: 2292 acctttatggtaacatcctctattccatcagcaactattattct 2249
>gb|AC146757.19| Medicago truncatula clone mth2-16n21, complete sequence Length = 135915 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Plus Query: 397 accttaatagtaacatcctctgttccatcagcaactataattctgacaggaggaacatct 456 ||||| || |||||||||||| ||||||||||||||| ||||| | ||||| | || Sbjct: 59375 acctttatggtaacatcctctaatccatcagcaactattattcttatgggaggtgaaact 59434 Query: 457 ttatcagaatccatata 473 || |||||||||||||| Sbjct: 59435 ttgtcagaatccatata 59451
>gb|AC147536.12| Medicago truncatula clone mth2-9l3, complete sequence Length = 111486 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Plus Query: 397 accttaatagtaacatcctctgttccatcagcaactataattctgacaggaggaacatct 456 ||||| || |||||||||||| ||||||||||||||| ||||| | ||||| | || Sbjct: 34943 acctttatggtaacatcctctaatccatcagcaactattattcttatgggaggtgaaact 35002 Query: 457 ttatcagaatccatata 473 || |||||||||||||| Sbjct: 35003 ttgtcagaatccatata 35019
>gb|AC145372.7| Medicago truncatula clone mth2-5f4, complete sequence Length = 94647 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Plus Query: 397 accttaatagtaacatcctctgttccatcagcaactataattct 440 ||||| || |||||||||||| ||||||||||||||| ||||| Sbjct: 46946 acctttatggtaacatcctctaatccatcagcaactattattct 46989
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 468 catatatctttcctgtactgca 489 |||||||||||||||||||||| Sbjct: 1337388 catatatctttcctgtactgca 1337367
>gb|AC008459.7| Homo sapiens chromosome 5 clone CTC-352D11, complete sequence Length = 136581 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 330 agtgctgtaaagatatgtgaa 350 ||||||||||||||||||||| Sbjct: 44067 agtgctgtaaagatatgtgaa 44047
>gb|AC127189.4| Rattus norvegicus 1 BAC CH230-266M16 (Children's Hospital Oakland Research Institute) complete sequence Length = 222423 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 414 ctctgttccatcagcaactataat 437 |||||||||||||| ||||||||| Sbjct: 4460 ctctgttccatcagtaactataat 4437
>gb|AC010295.7| Homo sapiens chromosome 5 clone CTB-143H13, complete sequence Length = 108051 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 agatatgtgaaaattctagg 359 |||||||||||||||||||| Sbjct: 60533 agatatgtgaaaattctagg 60514
>emb|Z95152.1|HS179N16 Human DNA sequence from clone RP1-179N16 on chromosome 6p21.1-21.33 Contains the MAPK13 and MAPK14 genes for mitogen-activated protein kinase 13 and 14 , a nudix type 5 motif (nudt5) pseudogene, the 5' end of the SLC26A8 gene for solute carrier family 26 member 8 and two CpG islands, complete sequence Length = 172048 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 ttctgacaggaggaacatct 456 |||||||||||||||||||| Sbjct: 124147 ttctgacaggaggaacatct 124128
>emb|CR318635.8| Zebrafish DNA sequence from clone CH211-253D2 in linkage group 23, complete sequence Length = 154312 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 46 ccttgaaacaatatttgcaaacca 69 |||||||||||||||||| ||||| Sbjct: 13427 ccttgaaacaatatttgctaacca 13404
>gb|AC022088.5|AC022088 Homo sapiens chromosome 5 clone CTB-110D2, complete sequence Length = 108906 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 agatatgtgaaaattctagg 359 |||||||||||||||||||| Sbjct: 96624 agatatgtgaaaattctagg 96643
>gb|AC011465.4|AC011465 Homo sapiens chromosome 19 clone CTC-450M9, complete sequence Length = 156997 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 gaaacaatatttgcaaacca 69 |||||||||||||||||||| Sbjct: 8593 gaaacaatatttgcaaacca 8574
>dbj|BS000087.1| Pan troglodytes chromosome 22 clone:RP43-110O22, map 22, complete sequences Length = 156630 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 gaaacaatatttgcaaacca 69 |||||||||||||||||||| Sbjct: 129099 gaaacaatatttgcaaacca 129118
>emb|CR735107.13| Zebrafish DNA sequence from clone CH211-127B16 in linkage group 12, complete sequence Length = 183614 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 attttttgcagtgctgtaaa 340 |||||||||||||||||||| Sbjct: 33169 attttttgcagtgctgtaaa 33150
>dbj|AP001687.1| Homo sapiens genomic DNA, chromosome 21q, section 31/105 Length = 340000 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 gaaacaatatttgcaaacca 69 |||||||||||||||||||| Sbjct: 264572 gaaacaatatttgcaaacca 264591
>dbj|AP000459.4| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-42M17, complete sequence Length = 171863 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 gaaacaatatttgcaaacca 69 |||||||||||||||||||| Sbjct: 153491 gaaacaatatttgcaaacca 153510
>gb|AC174772.1| Gasterosteus aculeatus clone VMRC28-84K14, complete sequence Length = 121286 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 aacatcctctgttccatcag 427 |||||||||||||||||||| Sbjct: 18862 aacatcctctgttccatcag 18843
>gb|AC145973.3| Gallus gallus BAC clone CH261-2E2 from chromosome unknown, complete sequence Length = 190804 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 aataagcaagagcagcctaa 102 |||||||||||||||||||| Sbjct: 63765 aataagcaagagcagcctaa 63746 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,767,551 Number of Sequences: 3902068 Number of extensions: 4767551 Number of successful extensions: 88487 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88292 Number of HSP's gapped (non-prelim): 182 length of query: 525 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 502 effective length of database: 17,143,297,704 effective search space: 8605935447408 effective search space used: 8605935447408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)