>PRPX_HORVU (P16273) Pathogen-related protein|
          Length = 235

 Score =  327 bits (837), Expect = 2e-89
 Identities = 157/178 (88%), Positives = 158/178 (88%)
 Frame = -1

Query: 622 QRLLKTWKMEMVHKVRPEDQKSVNLKNYSASTNGLKPLTRXEVMAMGGYNAFLATTLPPE 443
           QRLLKTW+MEMVHKVRPEDQKSVNLKNYSASTNGLKPLTR EVMAMGGYNAFLATTLPPE
Sbjct: 58  QRLLKTWEMEMVHKVRPEDQKSVNLKNYSASTNGLKPLTREEVMAMGGYNAFLATTLPPE 117

Query: 442 HRIYDPXAESVESATSTFLTAFPRGFAIEVLDVYSGPPAPRIAFKFRHWGYMEGPFKGHP 263
           HRIYDP AESVESATSTFLTAFPRGFAIEVLDVYS P APRIAFKFRHWGYMEGPFKGHP
Sbjct: 118 HRIYDPEAESVESATSTFLTAFPRGFAIEVLDVYSSPSAPRIAFKFRHWGYMEGPFKGHP 177

Query: 262 PHGGRVEFFGVCVFHVDEDIKVEKAEFFYERGNXXXXXXXXXXXXXXXSGCPVMRGAD 89
           PHGGRVEFFGVCVFHVDED KVEKAEFFYERGN               SGCPVMRGAD
Sbjct: 178 PHGGRVEFFGVCVFHVDEDTKVEKAEFFYERGNFLASFLTAPAASASASGCPVMRGAD 235

>ADA2A_CAVPO (Q60474) Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor)|
           (Alpha-2A adrenoreceptor) (Alpha-2AAR)
          Length = 450

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
 Frame = -3

Query: 620 AVAQDLEDGDGPQGASRGPEERQPQELLRLHQRAEATD----------AXGGHGHGRLQR 471
           A A DLE+    + A R P  R+P+  LR   +A A+           A G  G G    
Sbjct: 288 AEALDLEESSSSEHAERPPGARRPERGLRAKSKARASQVKPGDSLPRRAPGAAGSGTSGS 347

Query: 470 VPGDHAAAGA 441
            PG+    GA
Sbjct: 348 GPGEERGGGA 357

>NCAM1_CHICK (P13590) Neural cell adhesion molecule 1, 180 kDa isoform precursor|
            (N-CAM 180)
          Length = 1091

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 5/109 (4%)
 Frame = +3

Query: 111  QPEADAEAAGAVKKLARKLPRS*KNS-----AFSTLMSSSTWKTQTPKNSTRPPCGGWPL 275
            +PE  A+ A  V+ +   +     NS      F+T  +S T +T T  +S  PP    P 
Sbjct: 807  EPEHTADTAATVEDMLPSVTTGTTNSDTITETFATAQNSPTSETTTLTSSIAPPATAIPD 866

Query: 276  KGPSM*PQCRNLKAILGAGGPL*TSSTSMAKPRGNAVRNVDVADSTDSA 422
                   Q    KA      P   SST    P       VD++D+  SA
Sbjct: 867  SNAMSPGQATPAKAGASPVSPPPPSSTPKVAPL------VDLSDTPSSA 909

>HXA13_HUMAN (P31271) Homeobox protein Hox-A13 (Hox-1J)|
          Length = 388

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
 Frame = -1

Query: 427 PXAESVESATSTFLTAFPRGFAIEVLDVYSGPPAPRIA-----FKFRHWGYMEGPFKGHP 263
           P   +++S       A    FA + +D  +GP A   +     F F H GY  GP+  H 
Sbjct: 186 PPPNAIKSCPQPPSAAAAAAFADKYMDT-AGPAAEEFSSRAKEFAFYHQGYAAGPYHHHQ 244

Query: 262 PHGGRVE 242
           P  G ++
Sbjct: 245 PMPGYLD 251

>CXA12_MOUSE (Q8BQU6) Gap junction alpha-12 protein (Connexin-47) (Cx47)|
          Length = 440

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = -3

Query: 602 EDGDGPQGASRGPEERQPQELLRLHQRAEATDAXGGHGHGRLQRVPG 462
           ED D   GA  GP E   +E      RAE   A GG G G+    PG
Sbjct: 152 EDEDEEPGAPEGPGEDTEEE------RAEDVAAKGGGGDGKTVVTPG 192

>RUSC1_MOUSE (Q8BG26) RUN and SH3 domain-containing protein 1|
          Length = 893

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = +3

Query: 78  VALQSAPLITGQPEADAEAAGAVKKLARKLPRS*KNSAFSTLMSSSTWKTQTPKNSTRPP 257
           V LQ AP  +  P A  +   AV     +L +S + ++       ST  + TP  S RPP
Sbjct: 666 VGLQQAPAPSCPPPALQQTMQAVLHWGERLAQSLRGTS-----GESTTDSSTP--SARPP 718

Query: 258 CGGW 269
            G W
Sbjct: 719 AGSW 722

>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse|
           transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
           (RT); Integrase (IN)]
          Length = 1196

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 466 LATTLPPEHRIYDPXAESVESATSTFLTAFPRGFA 362
           L   L  E+R+Y+  AE   S  ST+L+ FP+ +A
Sbjct: 120 LTLNLEDEYRLYETSAEPEVSPGSTWLSDFPQAWA 154

>EPN3_HUMAN (Q9H201) Epsin-3 (EPS-15-interacting protein 3)|
          Length = 632

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -3

Query: 356 GAGRLQRPASSQDRLQVPALGLHGGSLQGP 267
           GAG   RP  +Q R   PALGL GG +  P
Sbjct: 540 GAGEPGRPTLNQMRTGSPALGLAGGPVGAP 569


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,162,862
Number of Sequences: 219361
Number of extensions: 1644043
Number of successful extensions: 5750
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5747
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)