Clone Name | rbah61f12 |
---|---|
Clone Library Name | barley_pub |
>PRPX_HORVU (P16273) Pathogen-related protein| Length = 235 Score = 327 bits (837), Expect = 2e-89 Identities = 157/178 (88%), Positives = 158/178 (88%) Frame = -1 Query: 622 QRLLKTWKMEMVHKVRPEDQKSVNLKNYSASTNGLKPLTRXEVMAMGGYNAFLATTLPPE 443 QRLLKTW+MEMVHKVRPEDQKSVNLKNYSASTNGLKPLTR EVMAMGGYNAFLATTLPPE Sbjct: 58 QRLLKTWEMEMVHKVRPEDQKSVNLKNYSASTNGLKPLTREEVMAMGGYNAFLATTLPPE 117 Query: 442 HRIYDPXAESVESATSTFLTAFPRGFAIEVLDVYSGPPAPRIAFKFRHWGYMEGPFKGHP 263 HRIYDP AESVESATSTFLTAFPRGFAIEVLDVYS P APRIAFKFRHWGYMEGPFKGHP Sbjct: 118 HRIYDPEAESVESATSTFLTAFPRGFAIEVLDVYSSPSAPRIAFKFRHWGYMEGPFKGHP 177 Query: 262 PHGGRVEFFGVCVFHVDEDIKVEKAEFFYERGNXXXXXXXXXXXXXXXSGCPVMRGAD 89 PHGGRVEFFGVCVFHVDED KVEKAEFFYERGN SGCPVMRGAD Sbjct: 178 PHGGRVEFFGVCVFHVDEDTKVEKAEFFYERGNFLASFLTAPAASASASGCPVMRGAD 235
>ADA2A_CAVPO (Q60474) Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor)| (Alpha-2A adrenoreceptor) (Alpha-2AAR) Length = 450 Score = 32.0 bits (71), Expect = 1.5 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 10/70 (14%) Frame = -3 Query: 620 AVAQDLEDGDGPQGASRGPEERQPQELLRLHQRAEATD----------AXGGHGHGRLQR 471 A A DLE+ + A R P R+P+ LR +A A+ A G G G Sbjct: 288 AEALDLEESSSSEHAERPPGARRPERGLRAKSKARASQVKPGDSLPRRAPGAAGSGTSGS 347 Query: 470 VPGDHAAAGA 441 PG+ GA Sbjct: 348 GPGEERGGGA 357
>NCAM1_CHICK (P13590) Neural cell adhesion molecule 1, 180 kDa isoform precursor| (N-CAM 180) Length = 1091 Score = 29.6 bits (65), Expect = 7.5 Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 5/109 (4%) Frame = +3 Query: 111 QPEADAEAAGAVKKLARKLPRS*KNS-----AFSTLMSSSTWKTQTPKNSTRPPCGGWPL 275 +PE A+ A V+ + + NS F+T +S T +T T +S PP P Sbjct: 807 EPEHTADTAATVEDMLPSVTTGTTNSDTITETFATAQNSPTSETTTLTSSIAPPATAIPD 866 Query: 276 KGPSM*PQCRNLKAILGAGGPL*TSSTSMAKPRGNAVRNVDVADSTDSA 422 Q KA P SST P VD++D+ SA Sbjct: 867 SNAMSPGQATPAKAGASPVSPPPPSSTPKVAPL------VDLSDTPSSA 909
>HXA13_HUMAN (P31271) Homeobox protein Hox-A13 (Hox-1J)| Length = 388 Score = 29.6 bits (65), Expect = 7.5 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 5/67 (7%) Frame = -1 Query: 427 PXAESVESATSTFLTAFPRGFAIEVLDVYSGPPAPRIA-----FKFRHWGYMEGPFKGHP 263 P +++S A FA + +D +GP A + F F H GY GP+ H Sbjct: 186 PPPNAIKSCPQPPSAAAAAAFADKYMDT-AGPAAEEFSSRAKEFAFYHQGYAAGPYHHHQ 244 Query: 262 PHGGRVE 242 P G ++ Sbjct: 245 PMPGYLD 251
>CXA12_MOUSE (Q8BQU6) Gap junction alpha-12 protein (Connexin-47) (Cx47)| Length = 440 Score = 29.6 bits (65), Expect = 7.5 Identities = 19/47 (40%), Positives = 21/47 (44%) Frame = -3 Query: 602 EDGDGPQGASRGPEERQPQELLRLHQRAEATDAXGGHGHGRLQRVPG 462 ED D GA GP E +E RAE A GG G G+ PG Sbjct: 152 EDEDEEPGAPEGPGEDTEEE------RAEDVAAKGGGGDGKTVVTPG 192
>RUSC1_MOUSE (Q8BG26) RUN and SH3 domain-containing protein 1| Length = 893 Score = 29.3 bits (64), Expect = 9.8 Identities = 21/64 (32%), Positives = 29/64 (45%) Frame = +3 Query: 78 VALQSAPLITGQPEADAEAAGAVKKLARKLPRS*KNSAFSTLMSSSTWKTQTPKNSTRPP 257 V LQ AP + P A + AV +L +S + ++ ST + TP S RPP Sbjct: 666 VGLQQAPAPSCPPPALQQTMQAVLHWGERLAQSLRGTS-----GESTTDSSTP--SARPP 718 Query: 258 CGGW 269 G W Sbjct: 719 AGSW 722
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1196 Score = 29.3 bits (64), Expect = 9.8 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = -1 Query: 466 LATTLPPEHRIYDPXAESVESATSTFLTAFPRGFA 362 L L E+R+Y+ AE S ST+L+ FP+ +A Sbjct: 120 LTLNLEDEYRLYETSAEPEVSPGSTWLSDFPQAWA 154
>EPN3_HUMAN (Q9H201) Epsin-3 (EPS-15-interacting protein 3)| Length = 632 Score = 29.3 bits (64), Expect = 9.8 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = -3 Query: 356 GAGRLQRPASSQDRLQVPALGLHGGSLQGP 267 GAG RP +Q R PALGL GG + P Sbjct: 540 GAGEPGRPTLNQMRTGSPALGLAGGPVGAP 569 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,162,862 Number of Sequences: 219361 Number of extensions: 1644043 Number of successful extensions: 5750 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 5535 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5747 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)