No.
Definition
Score (bits)
E Value
1 emb|X16648.1|HVPR1 Barley fungal pathogen induced mRNA for patho...
1144
0.0
2 gb|AY111294.1| Zea mays CL31612_1 mRNA sequence
252
1e-63
3 ref|NM_188784.1| Oryza sativa (japonica cultivar-group), predic...
210
4e-51
4 ref|NM_188786.1| Oryza sativa (japonica cultivar-group), predic...
198
2e-47
5 dbj|AK059893.1| Oryza sativa (japonica cultivar-group) cDNA clon...
198
2e-47
6 gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, ...
135
2e-28
7 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
135
2e-28
8 dbj|AP002865.1| Oryza sativa (japonica cultivar-group) genomic D...
135
2e-28
9 ref|NM_191890.1| Oryza sativa (japonica cultivar-group), predic...
56
1e-04
10 ref|NM_191889.1| Oryza sativa (japonica cultivar-group), predic...
56
1e-04
11 dbj|AP003142.2| Oryza sativa (japonica cultivar-group) genomic D...
56
1e-04
12 dbj|AK109409.2| Oryza sativa (japonica cultivar-group) cDNA clon...
56
1e-04
13 dbj|AK106037.1| Oryza sativa (japonica cultivar-group) cDNA clon...
56
1e-04
14 dbj|AK061471.1| Oryza sativa (japonica cultivar-group) cDNA clon...
56
1e-04
15 ref|XM_848999.1| PREDICTED: Canis familiaris similar to RIC3 pro...
44
0.54
16 gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ...
42
2.1
17 ref|XM_369537.1| Magnaporthe grisea 70-15 chromosome III hypothe...
42
2.1
18 dbj|AK131908.1| Mus musculus adult male tongue cDNA, RIKEN full-...
42
2.1
19 dbj|AK131907.1| Mus musculus adult male tongue cDNA, RIKEN full-...
42
2.1
20 ref|NM_001033280.1| Mus musculus gene model 94, (NCBI) (Gm94), mRNA
42
2.1
21 gb|AC104867.18| Mus musculus chromosome 18, clone RP24-320L19, c...
42
2.1
22 gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete...
42
2.1
23 gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
40
8.5
24 ref|XM_415333.1| PREDICTED: Gallus gallus similar to butyrophili...
40
8.5
25 gb|AE007307.1| Sinorhizobium meliloti 1021 plasmid pSymA section...
40
8.5
26 gb|AC146699.5| Mus musculus chromosome 6, clone RP24-211G11, com...
40
8.5
27 emb|AJ748131.1| Streptomyces ribosidificus ribostamycin biosynth...
40
8.5
28 emb|AL445929.5| Human DNA sequence from clone RP11-408M7 on chro...
40
8.5
29 emb|AL359543.13| Human DNA sequence from clone RP11-98O1 on chro...
40
8.5
30 emb|BX572606.1| Rhodopseudomonas palustris CGA009 complete genom...
40
8.5
31 emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete ...
40
8.5
32 gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
40
8.5
33 dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co...
40
8.5
34 gb|AE004922.1| Pseudomonas aeruginosa PAO1, section 483 of 529 o...
40
8.5
35 emb|AJ744850.1| Streptomyces ribosidificus ribostamycin biosynth...
40
8.5
36 emb|CT027681.7| Mouse DNA sequence from clone RP24-330H24 on chr...
40
8.5
>gb|AC007789.1 | Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence
Length = 182756
Score = 135 bits (68), Expect = 2e-28
Identities = 225/278 (80%), Gaps = 6/278 (2%)
Strand = Plus / Minus
Query: 216 acatggaagacgcaaacgccgaagaactcgacgcgcccaccgtgcggagggtggcccttg 275
|||||||| | ||||| |||||| ||||| || ||| | || || || ||||| || ||
Sbjct: 123831 acatggaaaatgcaaatgccgaaaaactcaacccgctcgccatggggcgggtgctccatg 123772
Query: 276 aagggaccctccatgtaaccccagtgccggaacttgaaggcgatcctgggagctggcggg 335
||||| |||||||||| ||||||||||| ||||||||| |||||| ||| |||
Sbjct: 123771 aaggggccctccatgtgcccccagtgccgaaacttgaagacgatccg------tggtggg 123718
Query: 336 ccgctgtagacgtccagcacctcgatggcgaagccccgggggaacgccgtgaggaacgtg 395
|| ||||||||||| |||||||||||||||||||| || ||||||||||| ||||| |||
Sbjct: 123717 ccactgtagacgtcgagcacctcgatggcgaagccacgcgggaacgccgtcaggaaggtg 123658
Query: 396 gacgtcgccgactcgaccgactccgcctncgggtcgtagatgcggtgctccggcggcagc 455
| | | | ||||| | || |||| | |||||||||||||||||||||||| ||||||
Sbjct: 123657 gccatgccggactccagcgtctccttgtccgggtcgtagatgcggtgctccggtggcagc 123598
Query: 456 gtggtcgccaggaacgcgttgtagccgcccatggccat 493
| ||| || |||||||||||||| ||| ||||||||
Sbjct: 123597 ttcgtctgcaagaacgcgttgtagctgccgatggccat 123560
Score = 131 bits (66), Expect = 3e-27
Identities = 192/235 (81%), Gaps = 6/235 (2%)
Strand = Plus / Plus
Query: 271 ccttgaagggaccctccatgtaaccccagtgccggaacttgaaggcgatcctgggagctg 330
|||||||||| ||||||||||| |||||||| |||||||||||| |||||| ||
Sbjct: 139799 ccttgaagggcccctccatgtacccccagtgtcggaacttgaagacgatccg------tg 139852
Query: 331 gcgggccgctgtagacgtccagcacctcgatggcgaagccccgggggaacgccgtgagga 390
| || || ||||||||||| |||||||||||||| ||||| || ||||||||||| | ||
Sbjct: 139853 gtggaccactgtagacgtcgagcacctcgatggcaaagccacgcgggaacgccgtcaaga 139912
Query: 391 acgtggacgtcgccgactcgaccgactccgcctncgggtcgtagatgcggtgctccggcg 450
|||||| | | | ||||| | || ||| | |||||| |||||||||||||||||||
Sbjct: 139913 acgtggccatgccggactccagcgtctcattgtccgggtcatagatgcggtgctccggcg 139972
Query: 451 gcagcgtggtcgccaggaacgcgttgtagccgcccatggccatgacctcctnccg 505
|||| | ||| ||||||||||||||||||||| || ||||| ||||||| |||
Sbjct: 139973 gcagtttcgtctgcaggaacgcgttgtagccgccgatagccatcacctccttccg 140027
Score = 81.8 bits (41), Expect = 2e-12
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 554 gacgctcttctggtcctcgggacgcaccttgtggaccatctccatcttccaggtcttgag 613
||||||||||||||||||||| ||||||||||||| | |||||||| ||||||||| ||
Sbjct: 140429 gacgctcttctggtcctcgggtcgcaccttgtggatgagctccatctcccaggtcttcag 140488
Query: 614 caacc 618
|||||
Sbjct: 140489 caacc 140493
Score = 79.8 bits (40), Expect = 1e-11
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 126 gcagaagcagccggcgcagtcaagaagctcgcgaggaagttgccacgctcgtagaagaac 185
|||| |||||| ||||| ||||||||||||||||||| ||||| || |||||||||||
Sbjct: 124359 gcagcagcagcaggcgcgctcaagaagctcgcgaggaaattgccgcgttcgtagaagaat 124300
Query: 186 tctgccttctccaccttgatgtcctcatcaac 217
|| |||||||| ||||| || ||||| |||||
Sbjct: 124299 tccgccttctcaaccttcatctcctcgtcaac 124268
Score = 77.8 bits (39), Expect = 4e-11
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 145 tcaagaagctcgcgaggaagttgccacgctcgtagaagaactctgccttctccaccttga 204
||||||||||||||||||| ||||| |||||||||||| |||| | |||||||||||| |
Sbjct: 139150 tcaagaagctcgcgaggaaattgccgcgctcgtagaagtactccgtcttctccaccttca 139209
Query: 205 tgtcctc 211
| |||||
Sbjct: 139210 tctcctc 139216
Score = 69.9 bits (35), Expect = 9e-09
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 558 ctcttctggtcctcgggacgcaccttgtggaccatctccatcttccaggtcttgagcaa 616
|||||||||||||| || |||||||||||||| | |||||||| ||||||||| |||||
Sbjct: 123396 ctcttctggtcctctggtcgcaccttgtggacgagctccatctcccaggtcttcagcaa 123338
>dbj|AP008207.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 135 bits (68), Expect = 2e-28
Identities = 225/278 (80%), Gaps = 6/278 (2%)
Strand = Plus / Minus
Query: 216 acatggaagacgcaaacgccgaagaactcgacgcgcccaccgtgcggagggtggcccttg 275
|||||||| | ||||| |||||| ||||| || ||| | || || || ||||| || ||
Sbjct: 8159710 acatggaaaatgcaaatgccgaaaaactcaacccgctcgccatggggcgggtgctccatg 8159651
Query: 276 aagggaccctccatgtaaccccagtgccggaacttgaaggcgatcctgggagctggcggg 335
||||| |||||||||| ||||||||||| ||||||||| |||||| ||| |||
Sbjct: 8159650 aaggggccctccatgtgcccccagtgccgaaacttgaagacgatccg------tggtggg 8159597
Query: 336 ccgctgtagacgtccagcacctcgatggcgaagccccgggggaacgccgtgaggaacgtg 395
|| ||||||||||| |||||||||||||||||||| || ||||||||||| ||||| |||
Sbjct: 8159596 ccactgtagacgtcgagcacctcgatggcgaagccacgcgggaacgccgtcaggaaggtg 8159537
Query: 396 gacgtcgccgactcgaccgactccgcctncgggtcgtagatgcggtgctccggcggcagc 455
| | | | ||||| | || |||| | |||||||||||||||||||||||| ||||||
Sbjct: 8159536 gccatgccggactccagcgtctccttgtccgggtcgtagatgcggtgctccggtggcagc 8159477
Query: 456 gtggtcgccaggaacgcgttgtagccgcccatggccat 493
| ||| || |||||||||||||| ||| ||||||||
Sbjct: 8159476 ttcgtctgcaagaacgcgttgtagctgccgatggccat 8159439
Score = 131 bits (66), Expect = 3e-27
Identities = 192/235 (81%), Gaps = 6/235 (2%)
Strand = Plus / Plus
Query: 271 ccttgaagggaccctccatgtaaccccagtgccggaacttgaaggcgatcctgggagctg 330
|||||||||| ||||||||||| |||||||| |||||||||||| |||||| ||
Sbjct: 8175678 ccttgaagggcccctccatgtacccccagtgtcggaacttgaagacgatccg------tg 8175731
Query: 331 gcgggccgctgtagacgtccagcacctcgatggcgaagccccgggggaacgccgtgagga 390
| || || ||||||||||| |||||||||||||| ||||| || ||||||||||| | ||
Sbjct: 8175732 gtggaccactgtagacgtcgagcacctcgatggcaaagccacgcgggaacgccgtcaaga 8175791
Query: 391 acgtggacgtcgccgactcgaccgactccgcctncgggtcgtagatgcggtgctccggcg 450
|||||| | | | ||||| | || ||| | |||||| |||||||||||||||||||
Sbjct: 8175792 acgtggccatgccggactccagcgtctcattgtccgggtcatagatgcggtgctccggcg 8175851
Query: 451 gcagcgtggtcgccaggaacgcgttgtagccgcccatggccatgacctcctnccg 505
|||| | ||| ||||||||||||||||||||| || ||||| ||||||| |||
Sbjct: 8175852 gcagtttcgtctgcaggaacgcgttgtagccgccgatagccatcacctccttccg 8175906
Score = 81.8 bits (41), Expect = 2e-12
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 554 gacgctcttctggtcctcgggacgcaccttgtggaccatctccatcttccaggtcttgag 613
||||||||||||||||||||| ||||||||||||| | |||||||| ||||||||| ||
Sbjct: 8176308 gacgctcttctggtcctcgggtcgcaccttgtggatgagctccatctcccaggtcttcag 8176367
Query: 614 caacc 618
|||||
Sbjct: 8176368 caacc 8176372
Score = 79.8 bits (40), Expect = 1e-11
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 126 gcagaagcagccggcgcagtcaagaagctcgcgaggaagttgccacgctcgtagaagaac 185
|||| |||||| ||||| ||||||||||||||||||| ||||| || |||||||||||
Sbjct: 8160238 gcagcagcagcaggcgcgctcaagaagctcgcgaggaaattgccgcgttcgtagaagaat 8160179
Query: 186 tctgccttctccaccttgatgtcctcatcaac 217
|| |||||||| ||||| || ||||| |||||
Sbjct: 8160178 tccgccttctcaaccttcatctcctcgtcaac 8160147
Score = 77.8 bits (39), Expect = 4e-11
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 145 tcaagaagctcgcgaggaagttgccacgctcgtagaagaactctgccttctccaccttga 204
||||||||||||||||||| ||||| |||||||||||| |||| | |||||||||||| |
Sbjct: 8175029 tcaagaagctcgcgaggaaattgccgcgctcgtagaagtactccgtcttctccaccttca 8175088
Query: 205 tgtcctc 211
| |||||
Sbjct: 8175089 tctcctc 8175095
Score = 69.9 bits (35), Expect = 9e-09
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 558 ctcttctggtcctcgggacgcaccttgtggaccatctccatcttccaggtcttgagcaa 616
|||||||||||||| || |||||||||||||| | |||||||| ||||||||| |||||
Sbjct: 8159275 ctcttctggtcctctggtcgcaccttgtggacgagctccatctcccaggtcttcagcaa 8159217
Score = 56.0 bits (28), Expect = 1e-04
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 266 gtggcccttgaagggaccctccatgtaaccccagtgccggaacttgaa 313
|||||||||| |||| || ||||||| ||||||||||||||||||||
Sbjct: 30514205 gtggcccttgtaggggccgtccatgtgtccccagtgccggaacttgaa 30514252
Score = 56.0 bits (28), Expect = 1e-04
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 266 gtggcccttgaagggaccctccatgtaaccccagtgccggaacttgaa 313
|||||||||| |||| || ||||||| ||||||||||||||||||||
Sbjct: 30506183 gtggcccttgtaggggccgtccatgtggccccagtgccggaacttgaa 30506230
>dbj|AP002865.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0034C11
Length = 139399
Score = 135 bits (68), Expect = 2e-28
Identities = 225/278 (80%), Gaps = 6/278 (2%)
Strand = Plus / Minus
Query: 216 acatggaagacgcaaacgccgaagaactcgacgcgcccaccgtgcggagggtggcccttg 275
|||||||| | ||||| |||||| ||||| || ||| | || || || ||||| || ||
Sbjct: 77428 acatggaaaatgcaaatgccgaaaaactcaacccgctcgccatggggcgggtgctccatg 77369
Query: 276 aagggaccctccatgtaaccccagtgccggaacttgaaggcgatcctgggagctggcggg 335
||||| |||||||||| ||||||||||| ||||||||| |||||| ||| |||
Sbjct: 77368 aaggggccctccatgtgcccccagtgccgaaacttgaagacgatccg------tggtggg 77315
Query: 336 ccgctgtagacgtccagcacctcgatggcgaagccccgggggaacgccgtgaggaacgtg 395
|| ||||||||||| |||||||||||||||||||| || ||||||||||| ||||| |||
Sbjct: 77314 ccactgtagacgtcgagcacctcgatggcgaagccacgcgggaacgccgtcaggaaggtg 77255
Query: 396 gacgtcgccgactcgaccgactccgcctncgggtcgtagatgcggtgctccggcggcagc 455
| | | | ||||| | || |||| | |||||||||||||||||||||||| ||||||
Sbjct: 77254 gccatgccggactccagcgtctccttgtccgggtcgtagatgcggtgctccggtggcagc 77195
Query: 456 gtggtcgccaggaacgcgttgtagccgcccatggccat 493
| ||| || |||||||||||||| ||| ||||||||
Sbjct: 77194 ttcgtctgcaagaacgcgttgtagctgccgatggccat 77157
Score = 131 bits (66), Expect = 3e-27
Identities = 192/235 (81%), Gaps = 6/235 (2%)
Strand = Plus / Plus
Query: 271 ccttgaagggaccctccatgtaaccccagtgccggaacttgaaggcgatcctgggagctg 330
|||||||||| ||||||||||| |||||||| |||||||||||| |||||| ||
Sbjct: 93396 ccttgaagggcccctccatgtacccccagtgtcggaacttgaagacgatccg------tg 93449
Query: 331 gcgggccgctgtagacgtccagcacctcgatggcgaagccccgggggaacgccgtgagga 390
| || || ||||||||||| |||||||||||||| ||||| || ||||||||||| | ||
Sbjct: 93450 gtggaccactgtagacgtcgagcacctcgatggcaaagccacgcgggaacgccgtcaaga 93509
Query: 391 acgtggacgtcgccgactcgaccgactccgcctncgggtcgtagatgcggtgctccggcg 450
|||||| | | | ||||| | || ||| | |||||| |||||||||||||||||||
Sbjct: 93510 acgtggccatgccggactccagcgtctcattgtccgggtcatagatgcggtgctccggcg 93569
Query: 451 gcagcgtggtcgccaggaacgcgttgtagccgcccatggccatgacctcctnccg 505
|||| | ||| ||||||||||||||||||||| || ||||| ||||||| |||
Sbjct: 93570 gcagtttcgtctgcaggaacgcgttgtagccgccgatagccatcacctccttccg 93624
Score = 81.8 bits (41), Expect = 2e-12
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 554 gacgctcttctggtcctcgggacgcaccttgtggaccatctccatcttccaggtcttgag 613
||||||||||||||||||||| ||||||||||||| | |||||||| ||||||||| ||
Sbjct: 94026 gacgctcttctggtcctcgggtcgcaccttgtggatgagctccatctcccaggtcttcag 94085
Query: 614 caacc 618
|||||
Sbjct: 94086 caacc 94090
Score = 79.8 bits (40), Expect = 1e-11
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 126 gcagaagcagccggcgcagtcaagaagctcgcgaggaagttgccacgctcgtagaagaac 185
|||| |||||| ||||| ||||||||||||||||||| ||||| || |||||||||||
Sbjct: 77956 gcagcagcagcaggcgcgctcaagaagctcgcgaggaaattgccgcgttcgtagaagaat 77897
Query: 186 tctgccttctccaccttgatgtcctcatcaac 217
|| |||||||| ||||| || ||||| |||||
Sbjct: 77896 tccgccttctcaaccttcatctcctcgtcaac 77865
Score = 77.8 bits (39), Expect = 4e-11
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 145 tcaagaagctcgcgaggaagttgccacgctcgtagaagaactctgccttctccaccttga 204
||||||||||||||||||| ||||| |||||||||||| |||| | |||||||||||| |
Sbjct: 92747 tcaagaagctcgcgaggaaattgccgcgctcgtagaagtactccgtcttctccaccttca 92806
Query: 205 tgtcctc 211
| |||||
Sbjct: 92807 tctcctc 92813
Score = 69.9 bits (35), Expect = 9e-09
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 558 ctcttctggtcctcgggacgcaccttgtggaccatctccatcttccaggtcttgagcaa 616
|||||||||||||| || |||||||||||||| | |||||||| ||||||||| |||||
Sbjct: 76993 ctcttctggtcctctggtcgcaccttgtggacgagctccatctcccaggtcttcagcaa 76935
>emb|CT027681.7 | Mouse DNA sequence from clone RP24-330H24 on chromosome 16, complete
sequence
Length = 190475
Score = 40.1 bits (20), Expect = 8.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 185 ctctgccttctccaccttga 204
||||||||||||||||||||
Sbjct: 88728 ctctgccttctccaccttga 88709
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,916,399
Number of Sequences: 3902068
Number of extensions: 3916399
Number of successful extensions: 77918
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77479
Number of HSP's gapped (non-prelim): 439
length of query: 622
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 599
effective length of database: 17,143,297,704
effective search space: 10268835324696
effective search space used: 10268835324696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)